| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1444956 = | NA (NA) | 8 (0.340) | 8/254 | 0.9 | 100% | intergenic (‑331/‑328) | yveA/PP_1260 | aspartate‑proton symporter/transposase |
| ? | NC_002947 | = 1849442 | 0 (0.000) | coding (343/2754 nt) | gacS | sensor protein GacS | |||||
GTGGGGATAGGCTCAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGC > NC_002947/1444826‑1445051 | gTGGGGATAGGCTCAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCAcc < 2:337586/136‑1 (MQ=255) tacATACCGGATAAGGGTTTGAGATATTAATTTATAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCggggaga > 1:419778/3‑132 (MQ=37) gATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTcgcg < 1:546076/136‑1 (MQ=255) gggTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCt > 1:410952/1‑120 (MQ=255) gggTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCt < 2:410952/120‑1 (MQ=255) agagaTGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCGGCGCGGTAGCGCCGCcaaaaata > 1:540808/1‑131 (MQ=37) gagaTGCAGTGCTAGTGCCTGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAg < 2:419778/136‑1 (MQ=255) aTGCAGTGCTAGGGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACCGGTACGGCGCAGAATTCGAAATGTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGTCTGCGCTGTCGCGCAGCTAACATGAGgtg < 2:76688/136‑1 (MQ=37) tACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGc < 1:29360/136‑1 (MQ=255) tACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGc < 2:346062/136‑1 (MQ=255) | GTGGGGATAGGCTCAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGC > NC_002947/1444826‑1445051 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |