New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1736154 =	20 (0.830)	4 (0.210)	3/208	1.5	23.7%	intergenic (‑76/+115)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
	?	NC_002947	1736246 =	10 (0.520)					intergenic (‑168/+23)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase

CGACGGATCAGGTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCC  >  NC_002947/1736020‑1736234                                                                                                                                       |                                                                                 ggtggcgatgttgctggtgcagtcgttgccttatgtggcagcgctggtgatggcgttcctgtcgtcgctgcccaagcccgcagaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGc                                                                                 <  2:373690‑M1/2‑1 (MQ=255)    gcgatgttgctggtgcagtcgttgccttatgtggcagcgctggtgatggcgttcctgtcgtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCa                                                                              >  1:518348‑M1/132‑136 (MQ=255)    gcgatgttgctggtgcagtcgttgccttatgtggcagcgctggtgatggcgttcctgtcgtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCa                                                                              >  1:455442‑M1/132‑136 (MQ=255)     cgatgttgctggtgcagtcgttgccttatgtggcagcgctggtgatggcgttcctgtcgtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCAt                                                                             >  2:295971‑M1/131‑136 (MQ=255)          ttgctggtgcagtcgttgccttatgtggcagcgctggtgatggcgttcctgtcgtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTagcg                                                                        <  1:11105‑M1/11‑1 (MQ=255)             tCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTAGCgggg                                                                     >  2:221124/1‑135 (MQ=255)              cGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTAGCggggg                                                                    >  2:384719/1‑134 (MQ=255)               gCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTACCGGGctg                                                                   >  1:6631/1‑134 (MQ=255)                 tggCCAGTTGACGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGc                                                                 <  2:640990/135‑1 (MQ=255)                    agtcgttgccttatgtggcagcgctggtgatggcgttcctgtcgtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGCACGCCCg                                                              >  1:338728‑M1/116‑136 (MQ=255)                      tcgttgccttatgtggcagcgctggtgatggcgttcctgtcgtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGCACGCCCGCt                                                            >  1:132281‑M1/114‑136 (MQ=255)                      tcgttgccttatgtggcagcgctggtgatggcgttcctgtcgtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGCACGCCCGCt                                                            >  1:523557‑M1/114‑136 (MQ=255)                      tcgttgccttatgtggcagcgctggtgatggcgttcctgtcgtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGCACGCCCGCt                                                            >  1:215242‑M1/114‑136 (MQ=255)                      tcgttgccttatgtggcagcgctggtgatggcgttcctgtcgtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGCACGCCCGCt                                                            >  1:36365‑M1/114‑136 (MQ=255)                      tcgttgccttatgtggcagcgcgggtgatggcgttcctgtcgtcgctgcccaagcccgcagaaaaggccgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGCACGCCCGCt                                                            >  1:613229‑M1/114‑136 (MQ=255)                        ttGACGGGTCGGCGAGCGCGCGGCTGGGGCCGTCATGGGGCACTCCGGGGCAAGGCACGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTcc                                                          <  2:68275/136‑1 (MQ=255)                        ttGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTcc                                                          <  1:459847/136‑1 (MQ=255)                        gttgccttatgtggcagcgctggtgatggcgttcctgtcgtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGCACGCCCGCTcc                                                          >  1:224322‑M1/112‑136 (MQ=255)                        gtGACGGGTGGGCGCGCCCTCGGCCGGGGCGGCCTTGGGGGACCCGGGGGCAAGGCACGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTcc                                                          <  1:390652/135‑1 (MQ=255)                                tAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACCggct                                                  >  2:220122/1‑134 (MQ=255)                                  ggCGAGTGCGCGGCTGGGGCCGGCTGGGGGGACGCGGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACt                                                <  2:123349/136‑1 (MQ=38)                                  ggCGAGAGCTCGGCTGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACt                                                <  1:386875/136‑1 (MQ=255)                                     tagagCTCGGCTGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGca                                             <  2:237296/135‑1 (MQ=255)                                     gagaGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGca                                             >  1:342568/1‑136 (MQ=255)                                          gtgggCTGGGGCGGTCTGGGGTGACTCGGGGGAATGTGTGGGGGGTGAATTCTGAGGGTCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCTCAGGTACTGCACAGct                                        <  2:223339/133‑1 (MQ=19)                                            gggCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGctct                                      <  1:523434/135‑1 (MQ=255)                                               ctggggCGGTAATGGGGCACGCCGGGGCAAGGCACGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGaa                                   <  2:342568/134‑1 (MQ=38)                                               cAGGGGCCGTCATGGGGTACTCCGGGGCAAGGCATGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTAACACAGGTACTGCACAGCTCTGaa                                   <  1:412143/136‑1 (MQ=255)                                               cAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGaa                                   <  1:163611/136‑1 (MQ=255)                                                gatggcgttcctgtcgtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAAc                                  >  1:642357‑M1/88‑136 (MQ=255)                                                  tggcgttcctgtcgtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGACACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGc                                >  1:320614‑M1/86‑136 (MQ=255)                                                          aTGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTTTATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACt                                                <  1:493846/112‑1 (MQ=255)                                                          aTGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTTTATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACt                                                >  2:493846/1‑112 (MQ=255)                                                                                aaggcGGGGAAATCTGAGGGGCGTTATCTAATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACCCCCGCACCCACAGCTAATGCAACTCGATGCACGCCAGATCCAACCCGGATGCAGCGGCCGTGcc  >  2:64007/1‑136 (MQ=255)                                                                                   aaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGc                                >  1:448089‑M1/53‑103 (MQ=255)                                                                                   aaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGc                                <  2:448089‑M1/51‑1 (MQ=255)                                                                                                                                       |                                                                                 CGACGGATCAGGTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCC  >  NC_002947/1736020‑1736234

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.