| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 652786 | 31 (1.280) | 26 (1.460) | 9/194 | 0.5 | 69.5% | coding (1960/1962 nt) | ctpL | methyl‑accepting chemotaxis protein CtpL |
| ? | NC_002947 | 4813203 = | 0 (0.000) | intergenic (‑318/‑237) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
GCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGA > NC_002947/4813131‑4813320 | gaataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAc > 2:518326‑M2/73‑136 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg > 2:250667‑M2/71‑74 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg < 2:64252‑M2/4‑1 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg < 2:602705‑M2/4‑1 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg > 2:340106‑M2/71‑74 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg > 2:321506‑M2/71‑74 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg < 2:127547‑M2/4‑1 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg > 1:64252‑M2/71‑74 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg > 1:602705‑M2/71‑74 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg > 1:127547‑M2/71‑74 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg < 1:250667‑M2/4‑1 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg < 1:340106‑M2/4‑1 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg < 1:321506‑M2/4‑1 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAcgc > 1:556540‑M2/71‑136 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAcgc > 2:451634‑M2/71‑136 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAcgc > 1:66882‑M2/71‑136 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCCCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCaaccc > 2:26195‑M2/71‑134 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatatcaCAGGCGCTGAAAATACTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAcgc > 1:315547‑M2/71‑136 (MQ=255) ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcaggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAcgc > 1:127323‑M2/71‑136 (MQ=255) gcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGccccc < 2:556540‑M2/73‑1 (MQ=255) gccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCt < 2:584091‑M2/74‑1 (MQ=255) aaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCGCaaa > 2:443059‑M2/59‑136 (MQ=255) aaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAAACCTACGGCAAACCCCTCAAAATTACAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCGCaaa > 2:214207‑M2/59‑136 (MQ=255) acaaacgtaggagcgggtttacccgcgaagccccgcgcgggcggcgggcgatctcaAAGCCGGTGAAAATCCTACCGCAAACACCTCAAAATTCCAACCCCCTACACTCAAAAATCCAACGCCGCCCCCACAAAAt > 2:429495‑M2/57‑136 (MQ=255) gggggtttacccgcgatgcgccgcgcggggggcgctctatctctCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACgccgcc < 2:581842‑M2/92‑1 (MQ=255) gtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAAATCCAACCCCGCCCCCACAAAAATCCAACGCCCACTccc > 1:581842‑M2/41‑136 (MQ=255) cccgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGACCACTCAAAATTCCAACGCCGCCCACTCAAAAATCAAAAGACGCCTCCCCTCGa > 1:234391‑M2/36‑136 (MQ=255) gggcggcgctcgatctcaCAGGCGCTGAAAATACTCCGGCAAACACCACAAAATTACAACGCCGTCCACTCAAAATTCCAACCCCGCCCCCACAAAATTACAACCCCCCCTCCCCACGAAAATCCAAACACAAAGa > 2:610089‑M2/19‑136 (MQ=255) | GCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGA > NC_002947/4813131‑4813320 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |