| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,993,814 | 0 | G | A | 52.8% | ‑0.1 / 47.9 | 36 | intergenic (+103/‑443) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| Reads supporting (aligned to +/- strand): ref base G (8/9); new base A (8/11); total (16/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAC > NC_002947/5993681‑5993941 | gtagcGGTTGTTTGTTTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGtt < 2:428192/134‑1 (MQ=255) gtgggtggtgttcgcgggggtattttcagcgcctgggaggtgtgcgccgggagtgtttcagcgcctgggagatcgcgcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCcagtccc < 1:377204‑M2/48‑4 (MQ=255) gtgggtggtgttcgccgggggtttttcagcgcctgggtggtgttcgcgggtagagtttcagcgcctgggagaccgagcgcggcccgcgGGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCcagtccc < 1:441628‑M2/48‑4 (MQ=255) gtgggaggtgttcgccggggtattttcagcgcctgggtggtgttcgccggaggattttctgcgcctgtgagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCcagtccc < 1:263151‑M2/48‑4 (MQ=255) gtgggaggtgttcgccggggtattttcagcgcctgggaggtgttcgccggtagattttcagcgcctgtgagatcgcgcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCcagtccc < 2:131292‑M2/48‑4 (MQ=255) gtgggaggtgttcgccgggggattttcagcgcctgggaggggttcgccgggagagtttcagcgcctgtgagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCcagtccc < 1:543710‑M2/48‑4 (MQ=255) gggggtggtgttcgccgggggattttcagcgcctgggaggtgttcgccggtagagtttcagcgcctgggagagcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCcagtccc < 2:232027‑M2/48‑4 (MQ=255) gggggtggtgtgcgccggggtattttcagcgcgtgggaggggttcgccgggagagtttcagcgcctgggagatcgcgcgccgcccgggCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCcagtccc < 2:616633‑M2/48‑4 (MQ=255) gggggaggggttcgccgggggattttctgcgcctgggaggtgttcgccgggagagtttctgcgcctgtgagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCcagtccc < 2:336025‑M2/48‑4 (MQ=255) ctgggaggtgttcgccgggggattttcagcgcctgggaggtgttcgccgggagtgtttcagcgcctgtgagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCcagtccc < 2:491323‑M2/48‑4 (MQ=255) ctgggaggtgttcgccgggggattttcagcgcctgggaggtgttcgccgggagtgtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCcagtccc < 1:485220‑M2/48‑4 (MQ=255) ctgggaggtgttcgccgggggattttcagcgcctgggaggtgttcgccgggagagtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCcagtccc < 1:423669‑M2/48‑4 (MQ=255) ctgggaggtgttcgccgggggattttcagcgcctgggaggtgttcgccgggagagtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCcagtccc < 1:3272‑M2/48‑4 (MQ=255) ctgggaggtgttcgccgggggattttcagcgcctgggaggtgttcgccgggagagtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCcagtccc < 1:206889‑M2/48‑4 (MQ=255) ctgggaggggttcgccgggggattttcagcgcgtgggtggtgttcgccgggagagtttctgcgcctgtgagttcgagggcggcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCcagtccc < 1:420129‑M2/48‑4 (MQ=255) ctgggaggcgtccgccggggcattttcagcgccggggaggtgtgcgccgggagagtttcagcgcctgggagatccagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCcagtccc < 2:59035‑M2/48‑4 (MQ=255) cggggaggtgttggccgggggtttttcagcgcctggtaggggttcgccggtagagttgcagcgcctgggagatcgagggccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCcagtccc < 1:195162‑M2/48‑4 (MQ=255) tgggaggtgttcgccgggggattttcagcgcctgggaggtgttcgccgggagagtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTAt < 1:250059‑M2/49‑1 (MQ=255) gggaggtgttcgccgggggattttcagcgcctgggaggtgttcgccgggagagtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCcagtccc < 2:555228‑M2/48‑4 (MQ=255) gggaggtgttcgccgggggattttcagcgcctgggaggtgttcgccgggagagtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCcagtccc > 1:555228‑M2/87‑131 (MQ=255) ggaggtgttcgcggggggattttcagcgcctgggtggtgttcgcggggagagtgtcagcgcctgggagaccgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTc < 2:440285‑M2/51‑1 (MQ=255) ccTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGgc < 1:425082/136‑1 (MQ=255) aggtgttcgccgggagagtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGgcatg < 2:71414‑M2/85‑3 (MQ=255) gccggaggattttcagcgcctgtgagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTa > 1:106475‑M2/44‑91 (MQ=255) gccggaggattttcagcgcctgtgagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTa < 2:106475‑M2/48‑1 (MQ=255) gccggaggattttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTAt > 2:120613‑M2/44‑92 (MQ=255) gccggaggattttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTAt < 1:120613‑M2/49‑1 (MQ=255) ccTTGAGGGTTGTAGTGCCTGTGAGATTGGACGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCTAGCCCCCTGGCGCACGCCTCGatat > 2:119934/1‑136 (MQ=255) tttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCcagtccc > 1:398687‑M2/34‑78 (MQ=255) tttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCcagtccc < 2:398687‑M2/48‑4 (MQ=255) aGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGata > 2:413915/1‑122 (MQ=255) aGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGata < 1:413915/122‑1 (MQ=255) cctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTAt < 2:621615‑M2/49‑1 (MQ=255) cctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTAt > 1:451873‑M2/26‑74 (MQ=255) cctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTAt < 2:544437‑M2/49‑1 (MQ=255) cctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTAt > 1:544437‑M2/26‑74 (MQ=255) cctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTAt > 1:572187‑M2/26‑74 (MQ=255) cctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTAt < 2:451873‑M2/49‑1 (MQ=255) cctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTAt < 2:572187‑M2/49‑1 (MQ=255) cctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTAt > 1:621615‑M2/26‑74 (MQ=255) cctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCAGGCCAATTATTc > 1:517641‑M2/26‑76 (MQ=255) cctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCAGGCCAATTATTc < 2:517641‑M2/51‑1 (MQ=255) ctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTAt > 1:406877‑M2/25‑73 (MQ=255) ctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTAt < 2:406877‑M2/49‑1 (MQ=255) taccgcgcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTcg < 2:382202‑M2/118‑1 (MQ=255) gatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTcg < 2:559998‑M2/118‑1 (MQ=255) gagcgcgcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTcg < 1:279020‑M2/118‑1 (MQ=255) ccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTcg > 2:446481‑M2/6‑123 (MQ=255) ccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTcg < 1:446481‑M2/118‑1 (MQ=255) ccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGGTTGTTTGGGGCCAGTTATTACTGTGGGGCGCGCACGCGAGCCCCCAGGCGCCCCCCGCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGgcc > 2:213799‑M2/6‑135 (MQ=255) cgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCTAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGcac < 1:119934‑M2/132‑1 (MQ=255) cgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTAGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCAGGCGCACGCCGCGATATAGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGcac > 2:389407‑M2/5‑136 (MQ=255) ttAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATTTCGCGTCGTACAAACAAGGCGGGCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGa < 2:549617/135‑1 (MQ=255) tCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAc > 2:519801/1‑136 (MQ=255) tCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAc > 2:57993/1‑136 (MQ=255) tCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAc > 2:413585/1‑136 (MQ=255) | GGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAC > NC_002947/5993681‑5993941 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |