Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,993,8140GA52.8% ‑0.1 / 47.9 36intergenic (+103/‑443)kefB‑III/PP_mr64glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
Reads supporting (aligned to +/- strand):  ref base G (8/9);  new base A (8/11);  total (16/20)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: E-value score below prediction cutoff.
Rejected as consensus: Frequency below/above cutoff threshold.

GGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAC  >  NC_002947/5993681‑5993941
                                                                                                                                     |                                                                                                                               
gtagcGGTTGTTTGTTTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGtt                                                                                                                               <  2:428192/134‑1 (MQ=255)
 gtgggtggtgttcgcgggggtattttcagcgcctgggaggtgtgcgccgggagtgtttcagcgcctgggagatcgcgcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGCcagtccc                                                                                                                             <  1:377204‑M2/48‑4 (MQ=255)
 gtgggtggtgttcgccgggggtttttcagcgcctgggtggtgttcgcgggtagagtttcagcgcctgggagaccgagcgcggcccgcgGGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGCcagtccc                                                                                                                             <  1:441628‑M2/48‑4 (MQ=255)
 gtgggaggtgttcgccggggtattttcagcgcctgggtggtgttcgccggaggattttctgcgcctgtgagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGCcagtccc                                                                                                                             <  1:263151‑M2/48‑4 (MQ=255)
 gtgggaggtgttcgccggggtattttcagcgcctgggaggtgttcgccggtagattttcagcgcctgtgagatcgcgcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGCcagtccc                                                                                                                             <  2:131292‑M2/48‑4 (MQ=255)
 gtgggaggtgttcgccgggggattttcagcgcctgggaggggttcgccgggagagtttcagcgcctgtgagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGCcagtccc                                                                                                                             <  1:543710‑M2/48‑4 (MQ=255)
 gggggtggtgttcgccgggggattttcagcgcctgggaggtgttcgccggtagagtttcagcgcctgggagagcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGCcagtccc                                                                                                                             <  2:232027‑M2/48‑4 (MQ=255)
 gggggtggtgtgcgccggggtattttcagcgcgtgggaggggttcgccgggagagtttcagcgcctgggagatcgcgcgccgcccgggCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGCcagtccc                                                                                                                             <  2:616633‑M2/48‑4 (MQ=255)
 gggggaggggttcgccgggggattttctgcgcctgggaggtgttcgccgggagagtttctgcgcctgtgagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGCcagtccc                                                                                                                             <  2:336025‑M2/48‑4 (MQ=255)
 ctgggaggtgttcgccgggggattttcagcgcctgggaggtgttcgccgggagtgtttcagcgcctgtgagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGCcagtccc                                                                                                                             <  2:491323‑M2/48‑4 (MQ=255)
 ctgggaggtgttcgccgggggattttcagcgcctgggaggtgttcgccgggagtgtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGCcagtccc                                                                                                                             <  1:485220‑M2/48‑4 (MQ=255)
 ctgggaggtgttcgccgggggattttcagcgcctgggaggtgttcgccgggagagtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGCcagtccc                                                                                                                             <  1:423669‑M2/48‑4 (MQ=255)
 ctgggaggtgttcgccgggggattttcagcgcctgggaggtgttcgccgggagagtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGCcagtccc                                                                                                                             <  1:3272‑M2/48‑4 (MQ=255)
 ctgggaggtgttcgccgggggattttcagcgcctgggaggtgttcgccgggagagtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGCcagtccc                                                                                                                             <  1:206889‑M2/48‑4 (MQ=255)
 ctgggaggggttcgccgggggattttcagcgcgtgggtggtgttcgccgggagagtttctgcgcctgtgagttcgagggcggcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGCcagtccc                                                                                                                             <  1:420129‑M2/48‑4 (MQ=255)
 ctgggaggcgtccgccggggcattttcagcgccggggaggtgtgcgccgggagagtttcagcgcctgggagatccagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGCcagtccc                                                                                                                             <  2:59035‑M2/48‑4 (MQ=255)
 cggggaggtgttggccgggggtttttcagcgcctggtaggggttcgccggtagagttgcagcgcctgggagatcgagggccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGCcagtccc                                                                                                                             <  1:195162‑M2/48‑4 (MQ=255)
  tgggaggtgttcgccgggggattttcagcgcctgggaggtgttcgccgggagagtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTAt                                                                                                                             <  1:250059‑M2/49‑1 (MQ=255)
   gggaggtgttcgccgggggattttcagcgcctgggaggtgttcgccgggagagtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGCcagtccc                                                                                                                             <  2:555228‑M2/48‑4 (MQ=255)
   gggaggtgttcgccgggggattttcagcgcctgggaggtgttcgccgggagagtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGCcagtccc                                                                                                                             >  1:555228‑M2/87‑131 (MQ=255)
    ggaggtgttcgcggggggattttcagcgcctgggtggtgttcgcggggagagtgtcagcgcctgggagaccgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTc                                                                                                                           <  2:440285‑M2/51‑1 (MQ=255)
                                 ccTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGgc                                                                                              <  1:425082/136‑1 (MQ=255)
                                      aggtgttcgccgggagagtttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGgcatg                                                                                         <  2:71414‑M2/85‑3 (MQ=255)
                                              gccggaggattttcagcgcctgtgagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTa                                                                                                                              >  1:106475‑M2/44‑91 (MQ=255)
                                              gccggaggattttcagcgcctgtgagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTa                                                                                                                              <  2:106475‑M2/48‑1 (MQ=255)
                                              gccggaggattttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTAt                                                                                                                             >  2:120613‑M2/44‑92 (MQ=255)
                                              gccggaggattttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTAt                                                                                                                             <  1:120613‑M2/49‑1 (MQ=255)
                                               ccTTGAGGGTTGTAGTGCCTGTGAGATTGGACGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCTAGCCCCCTGGCGCACGCCTCGatat                                                                                >  2:119934/1‑136 (MQ=255)
                                                        tttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGCcagtccc                                                                                                                             >  1:398687‑M2/34‑78 (MQ=255)
                                                        tttcagcgcctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGCcagtccc                                                                                                                             <  2:398687‑M2/48‑4 (MQ=255)
                                                            aGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGata                                                                                 >  2:413915/1‑122 (MQ=255)
                                                            aGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGata                                                                                 <  1:413915/122‑1 (MQ=255)
                                                                cctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTAt                                                                                                                             <  2:621615‑M2/49‑1 (MQ=255)
                                                                cctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTAt                                                                                                                             >  1:451873‑M2/26‑74 (MQ=255)
                                                                cctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTAt                                                                                                                             <  2:544437‑M2/49‑1 (MQ=255)
                                                                cctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTAt                                                                                                                             >  1:544437‑M2/26‑74 (MQ=255)
                                                                cctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTAt                                                                                                                             >  1:572187‑M2/26‑74 (MQ=255)
                                                                cctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTAt                                                                                                                             <  2:451873‑M2/49‑1 (MQ=255)
                                                                cctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTAt                                                                                                                             <  2:572187‑M2/49‑1 (MQ=255)
                                                                cctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTAt                                                                                                                             >  1:621615‑M2/26‑74 (MQ=255)
                                                                cctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCAGGCCAATTATTc                                                                                                                           >  1:517641‑M2/26‑76 (MQ=255)
                                                                cctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCAGGCCAATTATTc                                                                                                                           <  2:517641‑M2/51‑1 (MQ=255)
                                                                 ctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTAt                                                                                                                             >  1:406877‑M2/25‑73 (MQ=255)
                                                                 ctgggagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTAt                                                                                                                             <  2:406877‑M2/49‑1 (MQ=255)
                                                                       taccgcgcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTcg                                                        <  2:382202‑M2/118‑1 (MQ=255)
                                                                       gatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTcg                                                        <  2:559998‑M2/118‑1 (MQ=255)
                                                                       gagcgcgcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTcg                                                        <  1:279020‑M2/118‑1 (MQ=255)
                                                                                    ccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTcg                                                        >  2:446481‑M2/6‑123 (MQ=255)
                                                                                    ccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTcg                                                        <  1:446481‑M2/118‑1 (MQ=255)
                                                                                    ccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGGTTGTTTGGGGCCAGTTATTACTGTGGGGCGCGCACGCGAGCCCCCAGGCGCCCCCCGCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGgcc                                           >  2:213799‑M2/6‑135 (MQ=255)
                                                                                     cgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCTAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGcac                                          <  1:119934‑M2/132‑1 (MQ=255)
                                                                                     cgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTAGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCAGGCGCACGCCGCGATATAGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGcac                                          >  2:389407‑M2/5‑136 (MQ=255)
                                                                                                      ttAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATTTCGCGTCGTACAAACAAGGCGGGCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGa                         <  2:549617/135‑1 (MQ=255)
                                                                                                                             tCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAc  >  2:519801/1‑136 (MQ=255)
                                                                                                                             tCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAc  >  2:57993/1‑136 (MQ=255)
                                                                                                                             tCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAc  >  2:413585/1‑136 (MQ=255)
                                                                                                                                     |                                                                                                                               
GGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTAC  >  NC_002947/5993681‑5993941

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: