New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1444956 =	NA (NA)	6 (0.570)	4/254	0.6	100%	intergenic (‑331/‑328)	yveA/PP_1260	aspartate‑proton symporter/transposase
	?	NC_002947	= 1849442	0 (0.000)					coding (343/2754 nt)	gacS	sensor protein GacS

AAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATctcct‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1445084‑1444956 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCCGAGCGCCT  <  NC_002947/1849442‑1849339                                                                                                                                                                                                                                           AAGCAAAAGGCGGCTGGCCCTACCGGGCCCACCGCCGTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGGCAGCGCAGCCCGGAAGGGCGGGGTGATCTCCTGC                                                                                                   >  1:219280/1‑136       AAGGCGGCTGGCCCTACCGGGCCCACCGCCTTTTCTTTTTCAAAATTTCACCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTCCGCGACACCGCAGCCCGGAAGGGCTGGGGGGTCACCAGCAGCGCc                                                                                             >  2:4643/1‑135                              AACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTAC                                                                      >  1:112851/1‑136                                                                                                cGCGCGACCGCCCCCCCCGGAAGGGCTGGGTGAGCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCCGAGCGC    <  1:181456/135‑1                                                                                                TGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCCGAGCGC    <  2:112851/136‑1                                                                                                  CGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCCGAGCGCCT  >  1:287912/1‑136                                                                                                                                                                                                                                           AAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATctcct‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1445084‑1444956 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCCGAGCGCCT  <  NC_002947/1849442‑1849339

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.