New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1849440 =	0 (0.000)	8 (0.750)	8/258	0.2	100%	coding (345/2754 nt)	gacS	sensor protein GacS
	?	NC_002947	2942681 =	NA (NA)					intergenic (+46/+37)	PP_2569/PP_2570	MHS family metabolite MFS transporter/transposase

AGAATTGCCGCACAAACCCTGGAGCAGGCCGATGTGCGCGCAGTGGCGTTTCTGGCCCCGGACCGCACGCGCCTGGCCCACGCCGGCCCGAGCATGCTCAATCTGCCGCCCAGCGGCGGTACCGGCACCCAACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1849574‑1849440 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCT  >  NC_002947/2942681‑2942789                                                                                                                                                                                                                                                      AGAATTGCCGCACAAACCCTGGAGCAGGCCGATGTGCGCGCAGTGGCGTTTCTGGCCCCGGACCGCACGCGCCTGGCCCACGCCGGCCCGAGCATGCTCAATCTGCCGCCCAGCGGCGGTACCGGCACCCAACTCT                                                                                                              <  1:141936/136‑1      TGCCGCACAAACCCTGGAGCAGGCCGATGTGCGCGCAGTGGCGTTTCTGGCCCCGGACAGCACGCGCCTGGCCCCCGCCGGCCCGAGCATGCTCAATCTGCCGCCCAGCGGCGGTACCGGCACCCACCTCTCATCA                                                                                                         >  1:205237/1‑136                     GGAGCAGGCCGATGTGCGCGCAGTGGCGTTTCTGGCCCCGGACCGCACGCGCCTGGCCCACGCCGGCCCGAGCATGCTCAATCTGCCGCCCAGCGGCGGTACCGGCACCCAACTCTCATCAAACAAAATGCAACCC                                                                                          <  2:235508/136‑1                                                   TCTGGCCCCGGACCGCACGCGCCTGGCCCACGCCGGCCCGAGCATGCTCAATCTGCCGCCCAGCGGCGGTACCGGCACCCAACTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCA                                                            >  2:175886/1‑136                                                          CCGGACCGCACGCGCCTGGCCCACGCCGGCCCGAGCATGCTCAATCTGCCGCCCAGCGGCGGTACCGGCACCCAACTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATA                                                     <  1:234142/136‑1                                                                    CGCGCCTGGCCCACGCCGGCCCGAGCATGCTCAATCTGCCGCCCAGCGGCGGTACCGGCACCCAACTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTC                                           >  2:68775/1‑136                                                                                                     ATCTGCCGCCCAGCGGCGGTACCGGCACCCAACTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCCAACCCCCGACCGGCCGG          >  1:227500/1‑136                                                                                                             CCCAGCGGCGGTACCGGCACCCAACTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCGTTGCGGAGCCAAGCCCCGGCCGGCCGGGCTTGGgg  >  2:195440/1‑134                                                                                                                                                                                                                                                      AGAATTGCCGCACAAACCCTGGAGCAGGCCGATGTGCGCGCAGTGGCGTTTCTGGCCCCGGACCGCACGCGCCTGGCCCACGCCGGCCCGAGCATGCTCAATCTGCCGCCCAGCGGCGGTACCGGCACCCAACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1849574‑1849440 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCT  >  NC_002947/2942681‑2942789

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.