New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2477094 =	2 (0.180)	3 (0.390)	3/186	0.5	71.4%	intergenic (+6/+143)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
	?	NC_002947	2477218 =	1 (0.130)					intergenic (+130/+19)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase

AAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCAC  >  NC_002947/2476979‑2477166                                                                                                                    |                                                                         ggacaggtgttttttgatgaacaggggcggccggcgcgggtgtaccagctggatgctggcgggggtgaggctacagagtttaaaaaccgggcgtagtgagattcagagtttttacAGCCTGTGCCGGCCTCTTcgc                                                      >  2:162573‑M1/116‑136 (MQ=255)          ttttttgatgaacaggggcggccggcgcgggtgtaccagctggatgctggcgggggtgaggctacagagtttaaaaaccgggcgtagtgagattcagagtttttacAGCCTGTGCCGGCCTCTTCGCGGGTAAAcc                                             >  1:195056‑M1/107‑136 (MQ=255)            ttttgatgaacaggggcggccggcgcgggtgtaccagctggatgctggcgggggtgaggctacagagtttaaaaaccgggcgtagtgagattcagagtttttacAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCg                                           >  1:112296‑M1/105‑136 (MQ=255)            ttttgatgaacaggggcggccggcgcgggtgtaccagctggatgctggcgggggtgaggctacagagtttaaaaaccgggcgtagtgagattcagagtttttacAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCg                                           >  2:47858‑M1/105‑136 (MQ=255)                            aGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTg                           >  1:253671/1‑136 (MQ=255)                              gcgcACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTgcg                         <  2:253671/136‑1 (MQ=255)                                                     atgctggcgggggtgaggctacagagtttaaaaaccgggcgtagtgagattcagagtttttacAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCAc  >  1:121703‑M1/64‑136 (MQ=255)                                                                              gtttaaaaaccgggcgtagtgagattcagagtttttacAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTcc    >  1:25499‑M1/39‑109 (MQ=255)                                                                              gtttaaaaaccgggcgtagtgagattcagagtttttacAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTcc    <  2:25499‑M1/71‑1 (MQ=255)                                                                                                                    |                                                                         AAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCAC  >  NC_002947/2476979‑2477166

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.