New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4578249	0 (0.000)	12 (1.160)	10/250	0.1	100%	intergenic (+64/‑73)	PP_4054/glgX	hypothetical protein/glycogen debranching enzyme
	?	NC_002947	= 5763126	NA (NA)					intergenic (+145/+373)	PP_5050/PP_5051	transposase/hypothetical protein

GGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCG  >  NC_002947/5763035‑5763223                                                                                            |                                                                                                  ggAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATgggg                                                       >  2:30777/1‑136 (MQ=255) ggAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATgggg                                                       >  2:147489/1‑136 (MQ=255) ggAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATgggg                                                       >  1:48892/1‑136 (MQ=255)   agaAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGgcg                                                     >  2:247543/1‑136 (MQ=255)   agaAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGgcg                                                     >  1:2046/1‑136 (MQ=255)         tctcTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGCTGCAAAGc                                               <  1:237990/136‑1 (MQ=255)                       aCTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCAttt                                 >  2:6886/1‑136 (MQ=255)                        cTCGTTCCTCGAGGTTGCTGTGAGTGGCCGATGGCGTTTTTACTGTAAATTTGCCTCCGGCCATAGTATCTCCTACCCCTATCCTGTGGGAGCGGCCTTGTGTCGCGTTGGGGCGCAAAGCGGCCCCAGCCATTTc                                <  1:13683/136‑1 (MQ=25)                        cTCGTACCTCGAGGTTGCTGAGAGAGTCCGATGGCGTTTTTACTGAAAATTTTCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGTGGCGCAAAGCGGCCCCAGCCATTTc                                <  1:12253/136‑1 (MQ=255)                           gTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAgt                             <  2:174467/136‑1 (MQ=255)                                tCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCt                        <  1:158820/136‑1 (MQ=255)                                      ttGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGc                  >  2:46869/1‑136 (MQ=255)                                               gagGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCt         <  1:6886/136‑1 (MQ=255)                                                     gATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGccc   >  2:51167/1‑136 (MQ=255)                                                      aTGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCCGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCg  >  1:137543/1‑136 (MQ=255)                                                      aTGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCg  <  1:22743/136‑1 (MQ=255)                                                      aTGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCCTTCCTGTGCCCg  >  1:263346/1‑136 (MQ=255)                                                                                            |                                                                                                  GGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCG  >  NC_002947/5763035‑5763223

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.