Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	1227086	1227215	130	2 [1]	[1] 2	PP_1067	sensor histidine kinase

ACCTGCCTGCACCAGCTCATCCTGGGCGTGGCGCAAGGTCTGCTCGGCATGCCGGCGCTCGCGAATCTGGCCCTTGAGGCGTTCGTTGCTGGCGCGCAGGTCGGCGGTGCGTTCGGCAATCCGCCGCTCCAGCTGGCTGTTGGCCTCTTCAAGGGCTTCGCGGGCCGCCAGGCGGGTGGCGATCACTTTGCGCCGCTCGTTCCAGGCAATGCCGAGGATCGCCAGCAAGGCAA  >  NC_002947/1226950‑1227182                                                                                                                                        |                                                                                                  aCCTGCCTGCACCAGCTCATGCTGGGCGTGGCGCAAGGTCTGCTCGGCATGCCGGCGCTCGCGAATCTGGCCCTTGAGGCGTTCGTTGCTGGCGCGCAGGTCGGCGGTGCGTTCGGCAATCCGCCGCTCCAgctgg                                                                                                   <  2:76306/136‑1 (MQ=255)                                                                                                  aGGTCGGCGGTGCGTTCGGCAATCCGCCGCTCCAGCTGGCTGTTGGCCTCTTCAAGGGCTTCGCGGGCCGCCAGGCGGGTGGCGATCACTTTGCGCCGCTCGTTCCAGGCAATGCCGAGGATCGCCAGCAAGGCaa  >  2:164388/1‑136 (MQ=255)                                                                                                                                        |                                                                                                  ACCTGCCTGCACCAGCTCATCCTGGGCGTGGCGCAAGGTCTGCTCGGCATGCCGGCGCTCGCGAATCTGGCCCTTGAGGCGTTCGTTGCTGGCGCGCAGGTCGGCGGTGCGTTCGGCAATCCGCCGCTCCAGCTGGCTGTTGGCCTCTTCAAGGGCTTCGCGGGCCGCCAGGCGGGTGGCGATCACTTTGCGCCGCTCGTTCCAGGCAATGCCGAGGATCGCCAGCAAGGCAA  >  NC_002947/1226950‑1227182

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑