| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,299,980:1 | +T | 6.5% | intergenic (+41/+29) | slyB → / ← nhaA‑I | outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,299,980 | 1 | . | T | 6.5% | 2399.0 / 152.4 | 566 | intergenic (+41/+29) | slyB/nhaA‑I | outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA |
| Reads supporting (aligned to +/- strand): ref base . (282/247); new base T (21/16); total (303/263) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.35e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 578 total aligned reads displayed.
TGGCAGCATGCGCGCCTATGTGCAGGCCGTGCAGGAGAACGAAATCTTCCGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTAAGAATGCCCATGCGGTCCATGCCGGCGTACTCACTGCTACCCGGG > NC_002947/1299831‑1300129 | tgGCAGCATGCGCGCCTATGTGCAGGCCGTGCAGGAGAACGAAATCTTCCGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCa > 1:933668/1‑150 (MQ=255) cagcaTGCGCGCCTATGTGCAGGCCGTGCAGGAGAACGAAATCTTCCGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTc > 2:4011349/1‑150 (MQ=255) cagcaTGCGCGCCTATGTGCAGGCCGTGCAGGAGAACGAAATCTTCCGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTc > 2:2488186/1‑150 (MQ=255) agcaTGCGCGCCTATGTGCAGGCCGTGCAGGAGAACGAAATCTTCCGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCg < 1:7177261/150‑1 (MQ=255) gcaTGCGCGCCTATGTGCAGGCCGTGCAGGAGAACGAAATCTTCCGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCgg > 2:75851/1‑150 (MQ=255) gcaTGCGCGCCTATGTGCAGGCCGTGCAGGAGAACGAAATCTTCCGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCgg < 2:3063277/150‑1 (MQ=255) gcaTGCGCGCCTATGTGCAGGCCGCGCAGGAGAACGAAATCGTCCGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGGACCAGTCGCGGTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGAC‑TGGCAGCAG‑CCATGTCgg < 2:7500804/150‑1 (MQ=255) caTGCGCGCCTATGTGCAGGCCGTGCAGGAGAACGAAATCTTCCGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCggg < 2:6155388/150‑1 (MQ=255) caTGCGCGCCTATGTGCAGGCCGTGCAGGAGAACGAAATCTTCCGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCggg < 2:5505808/150‑1 (MQ=255) caTGCGCGCCTATGTGCAGGCCGTGCAGGAGAACGAAATCTTCCGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGAC‑TGGCAGCAG‑CCATGTCggg < 2:6828407/150‑1 (MQ=255) caTGCGCGCCTATGTGCAGGCCGTGCAGGAGAACGAAATCTTACGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGAC‑TGGCAGCAG‑CCATGTCggg < 1:5489044/150‑1 (MQ=255) gcgcgcCTATGTGCAGGCCGTGCAGGAGAACGAAATCTTCCGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGtt > 2:8502087/1‑150 (MQ=255) cgcgcCTATGTGCAGGCCGTGCAGGAGAACGAAATCTTCCGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGttt < 2:3447298/150‑1 (MQ=255) cgcgcCTATGTGCAGGCCGTGCAGGAGAACGAAATCTTCCGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGttt < 2:7071447/150‑1 (MQ=255) cgcCTATGTGCAGGCCGTGCAGGAGAACGAAATCTTCCGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGatttt < 2:7437856/150‑1 (MQ=255) cTATGTGCAGGCCGTGCAGGAGAACGAAATCTTCCGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCa > 1:7322181/1‑150 (MQ=255) cTATGTGCAGGCCGTGCAGGAGAACGAAATCTTCCGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCa > 1:6728593/1‑150 (MQ=255) cTATGTGCAGGCCGTGCAGGAGAACGAAATCTTCCGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCa > 1:5161034/1‑150 (MQ=255) cTATGTGCAGGCCGTGCAGGAGAACGAAATCTTCCGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAAGAAAAAACCCCGAC‑TGGCAGCAG‑CCATGTCGGGGttttttat < 1:4617403/150‑3 (MQ=38) aTGTGCAGGCCGTGCAGGAGAACGAAATCTTCCGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATg > 1:1247385/1‑150 (MQ=255) cAGGCAGTGCATGAGAACGAAATCTTCCGTTTTGGCGACCGAGTGCGCATCATGACTTTATACGGTACCAGTCGCGTTTCGCACTGACCTTTGTGCAGTAATAAAAAACCCCGACATGGATGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCa < 1:8095174/150‑1 (MQ=255) gCCGTGCAGGAGAACGAAATCTTCCGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGcc > 2:7781095/1‑150 (MQ=255) gTGCAGGAGAACGAAATCTTCCGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAg > 1:8653228/1‑150 (MQ=255) aGGAGAACGAAATCTTCCGTGTTGGCGACCGAGTGCGCATCATGACCGTAGACGGTACCAGCCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑CTCGGGGATTATTCATGCCTCAGCCAAGTCAg < 1:2485989/150‑1 (MQ=255) ggAGAACGAAATCTTCCGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAgg < 1:4303428/150‑1 (MQ=255) gagaACGAAATCTTCCGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGc > 2:714159/1‑150 (MQ=255) aaCGAAATCTTCCGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAAt > 1:6926745/1‑150 (MQ=255) cGAAATCTTCCGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGc > 1:578773/1‑150 (MQ=255) gAAATCTTCCGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCt > 1:1936294/1‑150 (MQ=255) gAAATCTTCCGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCt > 2:1521032/1‑150 (MQ=255) gAAATCTTCCGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCt > 1:6457864/1‑150 (MQ=255) aaaTCTTCCGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACCTGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTg < 2:514407/150‑1 (MQ=255) tCTTCCGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGtt > 2:1725667/1‑150 (MQ=255) ttCCGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGtttt > 2:5979549/1‑150 (MQ=255) tCCGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTg > 1:4083780/1‑150 (MQ=255) ccGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGc > 2:4829636/1‑150 (MQ=255) tgtTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGc < 1:3269263/150‑1 (MQ=255) gtTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCt < 2:658512/150‑1 (MQ=255) cGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGc > 2:1276470/1‑150 (MQ=255) gAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCg > 1:4882428/1‑150 (MQ=255) gAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCg < 1:8512418/150‑1 (MQ=255) atcatGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGc > 1:2937261/1‑150 (MQ=255) tcatGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCg > 2:4222153/1‑150 (MQ=255) catGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGt < 1:7533084/150‑1 (MQ=255) atGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTa > 1:2097687/1‑150 (MQ=255) tGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTg < 1:3391904/129‑1 (MQ=255) tGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGa < 2:2863716/150‑1 (MQ=255) tAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATc > 1:3058421/1‑150 (MQ=255) tAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATc > 2:4623630/1‑150 (MQ=255) tAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATc < 1:2661336/150‑1 (MQ=255) tAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATc > 1:3909213/1‑150 (MQ=255) aGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCa > 1:1008599/1‑150 (MQ=255) cGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCg < 2:6438619/150‑1 (MQ=255) gTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCgca < 1:2727947/150‑1 (MQ=255) aCCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCACTGCGGTGATCGGCTACGCCG‑TCACCgcaat < 1:2287410/150‑3 (MQ=255) ccAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGATCGGCTACGCCG‑TCACCgcaatg < 2:5372100/150‑4 (MQ=255) gTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAg > 1:706339/1‑150 (MQ=255) gTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAg < 1:1882064/150‑1 (MQ=255) tCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAga > 2:3760830/1‑150 (MQ=255) tttCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGTCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCTATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCATCAAAgaacgta < 2:3908867/150‑3 (MQ=255) cGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCa < 2:3363911/150‑1 (MQ=255) gCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAg > 2:5763429/1‑150 (MQ=255) cACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGt > 2:5280941/1‑150 (MQ=255) cACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGNGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGt < 2:2234652/150‑1 (MQ=255) cTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTaa < 2:6680193/150‑1 (MQ=255) cTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGATTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTaa < 1:344956/150‑1 (MQ=255) tGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTAAg > 2:2039718/1‑150 (MQ=255) gACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAgg < 2:8365760/76‑1 (MQ=255) cGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTAAGAATg > 1:77668/1‑150 (MQ=255) tGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTAAGAATGCCCAt < 2:1001320/150‑1 (MQ=255) aggcatgaaaaaaCCCCGAC‑TGGCAGCAG‑CCATGTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCACTGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTAAGAATGCCCATGc > 1:6537279/8‑150 (MQ=37) aGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTAAGAATGCCCATGCg < 1:6310002/150‑1 (MQ=255) taataaAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTAAGAATGCCCATGCGGt < 2:6926745/150‑1 (MQ=255) taaAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTAAGAATGCCCATGCGGTCCa > 2:2704111/1‑150 (MQ=255) taaAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTAAGAATGCCCATGCGGTCCa < 1:5381399/150‑1 (MQ=255) aaaaaaCCCCGAC‑TGGCAGCAGCCCT‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTAAGAATGCCCATGCGGTCCAt > 2:4924222/1‑150 (MQ=39) aaaaCCCCGAC‑TGGCAGCAG‑CCATGTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTAAGAATGCCCATGCGGTCCATGc > 1:6362000/1‑150 (MQ=39) aaCCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCTGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTAAGAATGCCCATGCGGTCCATGCCg < 1:6290570/150‑1 (MQ=255) aCCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTAAGAATGCCCATGCGGTCCATGCCgg > 1:368697/1‑150 (MQ=255) aCCCCGAC‑TGGCAGCAG‑CCATGTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTAAGAATGCCCATGCGGTCCATGCCgg > 1:5240366/1‑150 (MQ=255) ccccGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAACCGATCACCGCAGCAAAGAACGAACCAGTAAGAATGCCCATGCGGTCCATGCCGGc > 2:7338964/1‑150 (MQ=255) cccGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTAAGAATGCCCATGCGGTCCATGCCGGCg > 2:5622705/1‑150 (MQ=255) cccGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTAAGAATGCCCATGCGGTCCATGCCGGCg > 2:2629938/1‑150 (MQ=255) cccGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTAAGAATGCCCATGCGGTCCATGCCGGCg > 1:4787600/1‑150 (MQ=255) ccGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTAAGAATGCCCATGCGGTCCATGCCGGCGt > 2:3219672/1‑150 (MQ=255) gACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTAAGAATGCCCATGCGGTCCATGCCGGCGTAc > 1:1386014/1‑150 (MQ=255) aCATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCaaa < 1:7599845/106‑1 (MQ=255) ctGGCAGCAG‑CCATGTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTAAGAATGCCCATGCGGTCCATGCCGGCGTACTc > 2:7964657/2‑150 (MQ=255) aTGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTAAGAATGCCCATGCGGTCCATGCCGGCGTACTCa > 1:5621146/1‑150 (MQ=255) aTGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTAAGAAAGCCCATGCGGTACATGCCGGCGTACTCa > 1:60956/1‑150 (MQ=255) ggCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTAAGAATGCCCATGCGGTCCATGCCGGCGTACTCACt < 2:8199897/150‑1 (MQ=255) gctg‑cCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTAAGAATGCCCATGCGGTCCATGCCGGCGTACTCACTGCTa > 2:1182762/1‑150 (MQ=255) ctg‑cCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTAAGAATGCCCATGCGGTCCATGCCGGCGTACTCACTGCTAc < 1:4186047/150‑1 (MQ=255) ctg‑cCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTAAGAATGCCCATGCGGTCCATGCCGGCGTACTCACTGCTAc > 1:8289645/1‑150 (MQ=255) g‑cCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTAAGAATGCCCATGCGGTCCATGCCGGCGTACTCACTGCTAccc < 1:1615622/150‑1 (MQ=255) g‑cCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTAAGAATGCCCATGCGGTCCATGCCGGCGTACTCACTGCTAccc > 2:6326067/1‑150 (MQ=255) ccA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTAAGAATGCCCATGCGGTCCATGCCGGCGTACTCACTGCTACCCg > 2:8613556/1‑150 (MQ=255) a‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTAAGAATGCCCATGCGGTCCATGCCGGCGTACTCACTGCTACCCggg > 1:7942335/1‑150 (MQ=255) a‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTAAGAATGCCCATGCGGTCCATGCCGGCGTACTCACTGCTACCCggg > 1:5935140/1‑150 (MQ=255) a‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTAAGAATGCCCATGCGGTCCATGCCGGCGTACTCACTGCTACCCggg < 2:8772717/150‑1 (MQ=255) | TGGCAGCATGCGCGCCTATGTGCAGGCCGTGCAGGAGAACGAAATCTTCCGTGTTGGCGACCGAGTGCGCATCATGACTGTAGACGGTACCAGTCGCGTTTCGCACTGACCGTAGTGCAGTAATAAAAAACCCCGACATGGCTGCTG‑CCA‑GTCGGGGTTTTTTCATGCCTCAGCCAAGTCAGGCAATGCTGGTTTTGCGGCTGGCCATTGCGGTGA‑CGGCGTAGCCGATCACCGCAGCAAAGAACGAACCAGTAAGAATGCCCATGCGGTCCATGCCGGCGTACTCACTGCTACCCGGG > NC_002947/1299831‑1300129 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |