New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4352881 =	NA (NA)	9 (0.020)	3/266	NT	NA	coding (748/1422 nt)	PP_3820	group II intron‑encoding maturase
	?	NC_002947	4397301 =	NA (NA)					coding (707/1422 nt)	PP_3868	group II intron‑encoding maturase

TCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTGGTTGACTCGATCGAAGAACTTCTCCA  >  NC_002947/4397287‑4397436               |                                                                                                                                        tcacctcctGCCGTGGGCTGACGACACCGCCCTACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATAAGGATGTCGTGGTTGACTCGATCGAAGAACTTCTCCa  <  2:886637/147‑1 (MQ=0)               |                                                                                                                                        TCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTGGTTGACTCGATCGAAGAACTTCTCCA  >  NC_002947/4397287‑4397436

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.