| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,673,063 | G→C | 7.6% | intergenic (+89/‑78) | prpF → / → prpD | aconitate isomerase/2‑methylcitrate dehydratase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,673,063 | 0 | G | C | 7.6% | 553.1 / 28.1 | 182 | intergenic (+89/‑78) | prpF/prpD | aconitate isomerase/2‑methylcitrate dehydratase |
| Reads supporting (aligned to +/- strand): ref base G (80/83); new base C (4/10); total (89/93) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.70e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.09e-01 | |||||||||||
Only 100 of 185 total aligned reads displayed.
GAGCCGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTGGCCGATTACGCC > NC_002947/2672914‑2673212 | gCCGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCt < 2:5261958/150‑1 (MQ=255) ccGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCtg < 1:4424856/150‑1 (MQ=255) cGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCtgt < 2:6779476/150‑1 (MQ=255) cGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCtgt < 2:371205/150‑1 (MQ=255) cGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCtgt < 2:2337247/150‑1 (MQ=255) cGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCtgt < 2:2098807/150‑1 (MQ=255) cGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCtgt < 2:152507/150‑1 (MQ=255) aGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTTCCCCCGCCCACA‑GGTA‑ATAACAGGGTTTGAATGCTGTGat > 1:4117228/1‑150 (MQ=255) cTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATcc < 1:2486685/150‑1 (MQ=255) tCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATccc < 1:6339694/150‑1 (MQ=255) tCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCACCCACA‑GGTA‑ATCACAGGGTTTGAATGCGGTGATATacc > 2:2206299/1‑150 (MQ=255) cgcgTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCCCACCCACA‑CGGA‑AACAAACCGGTTTAAAGCTGTGCTATcacg > 1:6614064/1‑147 (MQ=255) gcgTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCtg < 2:8668073/150‑1 (MQ=255) gcgTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCCCACCCACA‑CGGA‑ATAACACGGTTTTAATGCTGTTattaaccgg > 1:8487092/1‑143 (MQ=255) cgTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCtgt < 2:6486782/150‑1 (MQ=255) cgTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCtgt < 2:6337549/150‑1 (MQ=255) gTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCtgtg < 2:7836196/150‑1 (MQ=255) gTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCCCTCCCACA‑GGGA‑ATAACAGGGTTTGAATTCTGTGATATACCggtg > 1:1385922/1‑150 (MQ=255) tGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTgg < 1:5187294/150‑1 (MQ=255) tGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTgg < 1:5001182/150‑1 (MQ=255) tGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTgg < 2:7268204/150‑1 (MQ=255) tGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTgg < 1:6918780/150‑1 (MQ=255) cTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGGATATCACAGCATTCAAACCCTGTGAT‑TACCTGTGGGa < 2:3914205/150‑1 (MQ=18) gATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGGATATCACAGCATTCAAACCCTGTGAT‑TACCTGTGGGAGc < 2:4811268/150‑1 (MQ=18) gATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCGTGCCCCCGCCCCCC‑CGGA‑AAAAAAGGGGTTGTATTGTGTGATATCCCGGTGGGGGc > 1:5942817/1‑150 (MQ=255) tGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCgg < 1:3084381/150‑1 (MQ=255) tGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGGATATCACAGCATTCAAACCCTGTGAT‑TACCTGTGGGAGCgg < 2:1350570/150‑1 (MQ=18) tGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCCCGCCCCCA‑CGGA‑AACACAGGGTTTGAATGCGGGGCTATCCCGGGGGGAGCgg > 1:7107972/1‑150 (MQ=255) ggAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCggg < 2:7686608/150‑1 (MQ=255) gAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGc < 2:1980104/150‑1 (MQ=255) gggCTGGGTTCGCGTGCCTGGCGATAGCTTCTAACGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGGATATCACAGCATTCAAACCCTGTGAT‑TACCTGTGGGAGCGGGCaa < 1:8449119/150‑1 (MQ=17) gCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGc < 1:6458850/150‑1 (MQ=255) cTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGGA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGcc > 2:2437845/1‑150 (MQ=255) gTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATTCTGTGATATACCGGTGGGAGCGGGCAAGCCcgcg > 2:1061464/1‑150 (MQ=255) gTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGTGCGGGCAAGCCcgcg > 2:8386696/1‑150 (MQ=255) gTGCCTGGCGATCGCTACTAAAGCACCACGGGCGCTCGGCTCCAAGCGGGGCCGCTTTGCGGCCCTTCGCGGGCTGGCCCGCTCCCCCA‑GGTA‑ATCCCTGGGTTTGACTGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGc < 2:3560846/150‑1 (MQ=37) gCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACCGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGAAAGCCCGCGAAGGGCTg < 2:2040176/150‑1 (MQ=255) ccTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGc > 2:8250300/1‑150 (MQ=255) aGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCGCCCACA‑GGTA‑ATCACAGGGGTTGTATGCTGTGATATCCCTGGGGGAGCGGGCAAGCCCGCGAAGGGCTGCACCGCAGcc > 2:3370791/1‑150 (MQ=38) aaaGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGGCCGCGCCCCCA‑GGTA‑ATCACAGGGGTTGTATTGGGTGGTATACCAGTGGGTGCGGGCAACCCCCCCAAGGGCGGCCCAGCAGCCCCCGCaa > 1:1870784/1‑150 (MQ=255) aaaGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGGTTTAAAGCTGTGATAAACCGGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCCGCaa > 1:7932309/1‑150 (MQ=37) caggggCGCTCGGCTACACGGGGGGCGGGTTGGCGGCCCTGGGGGGGCTGGCCGGCGCCCACC‑GTTA‑ATCACCGGGTTTTAAGGGTGTGATATCCGTGTGGTAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGaa < 1:7119329/146‑1 (MQ=255) cacTGGCGCTCGGCTTCATGTGGGGCGGCTTGGCGGCCCTTCGGGGGCTTGCCGGCTCCCACG‑GGTA‑AACACCGGTTTTGAATGCTGTGATATCCCTGTGGGAGCGGGAAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGaa < 2:2348543/150‑1 (MQ=255) cacTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCgg > 2:5812365/1‑107 (MQ=255) cacTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCgg < 1:5813098/107‑1 (MQ=255) cacTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGaa < 2:7915318/150‑1 (MQ=255) ttCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCACCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATACCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGGGCTGGATATg > 2:6215556/1‑150 (MQ=255) tcatgcggggCCGCTTTGCGGCCCTGCGGGGGCTTGCCCGCTCCCCCT‑GTTA‑ATCCCTGGGTTTGAATGGTGTGATTTCCCTGTGGGCGCGGGCACGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGa < 1:3617110/144‑1 (MQ=255) atgtggggCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACC‑GGGT‑ATCACAGGGTTTTAAGGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAgc < 2:7761105/146‑1 (MQ=25) acgagGGGCCGCTTGGCGGCCCTTCGCGGGCTTGCCCGCTCCCACC‑GGTA‑ATCACAGGGTTTGAATGCTGTGTTATCCCTGGGGTAGGGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAgc < 2:1886513/148‑1 (MQ=38) aaGAGGGGCCGCTTGGGGGCCCTTCGGGGGCTGGCCCGCTCCCACT‑GGTA‑ATCACTGGGTTTGAAGGCTGTGATATCCCTGTGGGCGGGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAgc < 2:3736369/150‑1 (MQ=255) gCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACg > 2:5119573/1‑150 (MQ=255) ccGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCGGTGATATCCCGGTGGGAGCGGGCAAGCCCGCGCAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGt > 2:534031/1‑150 (MQ=255) gCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGGGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGCGCTGGATATGAGCGCCAACGTAg > 2:7880655/1‑150 (MQ=255) gCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCGGGGAGATCCCGGGGGGAGCGGGCCAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCCCTTCTGACGGGAGCTGGATATGAGCGCCAACGtcg > 2:7880397/1‑148 (MQ=37) tttGCGGCCCTTCGCGGGCTTGCCCGCTCCCACC‑GTTA‑ATCCCTGGTTTTTATTGCTGTGATATCCCTGTGGGAGGGGGCACGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGAc < 1:3503866/150‑1 (MQ=38) tGCGCCCCTTCGGGGGCTGCCCCGCCCCCCCC‑TTAA‑ATCCCGGGTTTTGATTGCTGTCATATCCGTGGGGGCGCGGCCACGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCt < 1:8239793/150‑1 (MQ=255) gCCCTTCGGGGGCTTGCCCGCTCCCACA‑GGTA‑AACACTGGTTTTGAATGCTGTGATAGCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAAc < 2:113603/150‑1 (MQ=38) cTTCGCGGGCTTGCCCGCGCCCACAGGGCT‑ATCACAGCATTCAAACCCGGTGAT‑TACCGGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCCACGTAGACCTCAACGAt > 2:506483/1‑150 (MQ=14) ttCGCGGGCTTGCCCGCTCCCACT‑GGTA‑ATCACAGGGTTTGATTGGTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATc < 2:5877485/150‑1 (MQ=255) ggttGCCGGCTCCCACT‑GTTA‑ATCACTGTTTTTTATTGTTGTTATTGCCGTGTGGGTGGGGGAACGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGa < 1:5325411/148‑1 (MQ=255) ttGCCCGCTCCCACA‑GGTA‑ATCACCGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGAtt > 1:2125943/1‑150 (MQ=255) ttGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGAtt > 2:2882792/1‑150 (MQ=255) tGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTa < 2:6046271/150‑1 (MQ=255) tGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTa > 2:12231/1‑150 (MQ=255) ggCCCGCGCCCCCA‑GGTA‑AACACCGGTTTTGAATGCTGGGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTa < 2:6045785/149‑1 (MQ=39) gCCCGCTCCCACC‑GTTA‑ATCACAGGGTTTGAATGCTGTGATAGCCCTGTGGGCGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTAc < 2:449603/150‑1 (MQ=255) gCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTAc < 2:4286743/150‑1 (MQ=255) gCCCGCTCCCACA‑GGTA‑AACACTGGGTTTGATTGCTTTGATAGCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTAc < 2:449336/150‑1 (MQ=39) ccGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGa > 1:333526/1‑150 (MQ=255) ccGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGa > 2:8211635/1‑150 (MQ=255) gCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGAcc > 1:2621857/1‑150 (MQ=255) tCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCgg < 2:2105376/150‑1 (MQ=255) tCCCACA‑GGGATATCACAGCATTCAAACCCTGTGAT‑TACCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCgg > 2:4007734/1‑150 (MQ=18) ccACA‑GGTA‑CTCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCGGAAGGGAGCTGGATATGAGCGCCAACGTCGACCTCAACGATCGCCCGGATTACGACCGGGt > 2:304781/1‑150 (MQ=255) ccACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGt > 1:4497434/1‑150 (MQ=255) ccACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGt > 2:8181808/1‑150 (MQ=255) ccACA‑GGTA‑ATCACAGGGTTTGAATGCTATGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGt > 1:7692562/1‑150 (MQ=255) caca‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTg > 2:6976087/1‑150 (MQ=255) caca‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTg > 1:3192688/1‑150 (MQ=255) caca‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTg > 2:6976076/1‑150 (MQ=255) ca‑GGTA‑ATCACAGGGTTTGAATGCTGTGTTATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCt < 2:4637556/150‑1 (MQ=255) gTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACa > 1:5586221/1‑150 (MQ=255) cacaGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAAccc > 2:5411490/1‑150 (MQ=255) acaGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCt > 2:2528504/1‑150 (MQ=255) acaGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCt > 1:485000/1‑150 (MQ=255) acaGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCt > 1:7589261/1‑150 (MQ=255) acaGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCt > 2:476009/1‑150 (MQ=255) acaGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCt > 2:2400045/1‑150 (MQ=255) ctgggTTGGAAGGCGGGGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTCCAAACCCTg < 2:3718132/148‑1 (MQ=39) caGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTg > 1:1656718/1‑150 (MQ=255) aGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTgg > 2:1561116/1‑150 (MQ=255) aGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTgg > 2:4120508/1‑150 (MQ=255) ggTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGAAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTGGcc > 2:5199971/1‑150 (MQ=255) ttttAATGCTTTTATATCCGTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTGGCCGa < 2:2173141/150‑1 (MQ=255) aggCTGTGATATCCCTGTGGGAGCGGGCACGCCCGCGACGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTGGCCGATTACg < 2:5593810/148‑1 (MQ=255) aTGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTGGCCGATTACg > 2:1566908/1‑150 (MQ=255) aTGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTGGCCGATTACg > 1:6401428/1‑150 (MQ=255) tGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTGGCCGATTACGc > 1:2920164/1‑150 (MQ=255) gCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTGGCCGATTACGcc > 2:1778892/1‑150 (MQ=255) | GAGCCGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTGGCCGATTACGCC > NC_002947/2672914‑2673212 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |