BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	2,683,011	A→G	5.2%	Q120Q (CAA→CAG)	PP_2348 →	sensor histidine kinase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	2,683,011	0	A	G	5.2%	1436.0 / 39.0	444	Q120Q (CAA→CAG)	PP_2348	sensor histidine kinase
Reads supporting (aligned to +/- strand): ref base A (220/199); new base G (14/9); total (235/209)
Fisher's exact test for biased strand distribution p-value = 5.22e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.31e-01

Only 100 of 448 total aligned reads displayed.

CCTATCAGCGGCCGTTTTCCGGTTACTACTTCCGCATCGATTTCGACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGCAGCAGATCGGCCTGGGCATGGGCCTGGTGGCGCTGATCCTGATTCTGGT  >  NC_002947/2682863‑2683160

 cTATCAGCGGCCGTTTTCCGGTTACTACTTCCGCATCGATTTCGACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAAct                                                                                                                                                     >  2:1066778/1‑150 (MQ=255)

  tATCAGCGGCCGTTTTCCGGTTACTACTTCCGCATCGATTTCGACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAActg                                                                                                                                                    >  2:7691527/1‑150 (MQ=255)

  tATCAGCGGCCGTTTTCCGGTTACTACTTCCGCATCGATTTCGACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAActg                                                                                                                                                    >  2:6244440/1‑150 (MQ=255)

  tATCAGCGGCCGTTTTCCGGTTACTACTTCCGCATCGATTTCGACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAActg                                                                                                                                                    >  1:7455625/1‑150 (MQ=255)

  tATCAGCGGCCGTTTTCCGGTTACTACTTCCGCATCGATTTCGACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAActg                                                                                                                                                    >  2:1602127/1‑150 (MQ=255)

   aTCAGCGGCCGTTTTCCGTTTACTACTTCCGCATCGATTTCGACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAActgc                                                                                                                                                   >  1:3491646/1‑150 (MQ=255)

   aTCAGCGGCCGTTTTCCGGTTACTACTTCCGCATCGATTTCGACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAActgc                                                                                                                                                   >  1:8421310/1‑150 (MQ=255)

        cGGCCGTTTTCCGGTTACTACTTCCGCATCGATTTCGACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGcc                                                                                                                                              <  1:1747523/150‑1 (MQ=255)

        cGGCCGTTTTCCGGTTACTACTTCCGCATCGATTTCGACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGcc                                                                                                                                              <  1:3270613/150‑1 (MQ=255)

         ggCCGTTTTCCGGTTACTACTTCCGCATCGATTTCGACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAGTTGCTGGcct                                                                                                                                             <  2:6073281/150‑2 (MQ=255)

          gCCGTTTGCCGGTTACTACTTCCGCATCGATTTCGACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCt                                                                                                                                            <  2:6898805/150‑1 (MQ=255)

           ccGTTTTCCGGTTACTACTTCCGCATCGATTTCGACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTg                                                                                                                                           >  1:725018/1‑150 (MQ=255)

           ccGTTTTCCGGTTACTACTTCCGCATCGATTTCGACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTg                                                                                                                                           >  2:6336839/1‑150 (MQ=255)

            cGTTTTCCGGTTACTACTTCCGCATCGATTTCGACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAGGGCCAGCAGTTGCTGGccttcc                                                                                                                                          <  2:3529663/150‑5 (MQ=255)

             gTTTTCCGGTTACTACTTCCGCATCGATTTCGACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCg                                                                                                                                         <  1:1492754/150‑1 (MQ=255)

                ttCCGGTTACTACTTCCGCATCGATTTCGACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGc                                                                                                                                      <  2:1696055/150‑1 (MQ=255)

                ttCCGGTTACTACTTCCGCATCGATTTAGACCAGGGTACCTGTAGGTCTAGTTCGCAGTGGGACCTGGACATGCCCAAGCCCGCAGAGCCCGGGCTTACCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGATGGCCCAGCGTGc                                                                                                                                      >  1:3626305/1‑150 (MQ=255)

                 tCCGGTTACTACTTCCGCATCGATTTCGACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGcc                                                                                                                                     <  2:4649500/150‑1 (MQ=255)

                   cGGTTACTACTTCCGCATCGATTTCGACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGa                                                                                                                                   >  1:6627838/1‑150 (MQ=255)

                    ggTTACTACTTCCGCATCGATTTCGACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGAc                                                                                                                                  >  2:4960380/1‑150 (MQ=255)

                     gTTACTACTTCCGCATCGATTTCGACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACt                                                                                                                                 >  1:8163479/1‑150 (MQ=255)

                      ttACTACTTCCGCATCGATTTCGACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCACGCAGGGCCAGCAGTTGCTGGCCTTCCGGGCCGagtt                                                                                                                                <  2:724267/150‑4 (MQ=38)

                              tCCGCATCGATTTCGACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGcc                                                                                                                        <  1:5227704/150‑1 (MQ=255)

                                cGCATCGATTTCGACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTg                                                                                                                      <  2:8782273/150‑1 (MQ=255)

                                 gCATCGATTTCGACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTgg                                                                                                                     >  2:3760963/1‑150 (MQ=255)

                                 gCATCGATTTCGACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTgg                                                                                                                     <  1:629974/150‑1 (MQ=255)

                                  cATCGATTTCGACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTggg                                                                                                                    >  2:6431931/1‑150 (MQ=255)

                                  cATCGATTTCGACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGAGCCGACTACCGGCGCCTggg                                                                                                                    >  2:7362898/1‑150 (MQ=255)

                                   aTCGATTTCGACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGc                                                                                                                   >  2:1737596/1‑150 (MQ=255)

                                        tttCGACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGTTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGa                                                                                                              <  2:8318319/150‑1 (MQ=255)

                                        tttCGACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGa                                                                                                              >  2:5227310/1‑150 (MQ=255)

                                        tttCGACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGa                                                                                                              >  2:7057536/1‑150 (MQ=255)

                                        tttCGACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGa                                                                                                              >  2:38623/1‑150 (MQ=255)

                                            gACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACAtc                                                                                                          >  2:1357243/1‑150 (MQ=255)

                                            gACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACAtc                                                                                                          >  1:5920037/1‑150 (MQ=255)

                                             aCCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACAtct                                                                                                         >  2:206150/1‑150 (MQ=255)

                                                 gggTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGAt                                                                                                     <  2:5347407/150‑1 (MQ=255)

                                                   gTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCa                                                                                                   <  1:2038038/150‑1 (MQ=255)

                                                     aCCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAgt                                                                                                 <  1:6070452/150‑1 (MQ=255)

                                                     aCCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAgt                                                                                                 <  1:6979279/150‑1 (MQ=255)

                                                      ccTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAgtg                                                                                                >  2:4843144/1‑150 (MQ=255)

                                                      ccTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAgtg                                                                                                >  2:447663/1‑150 (MQ=255)

                                                        tGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGtt                                                                                              >  2:7957776/1‑150 (MQ=255)

                                                         ggAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTg                                                                                             >  1:3216948/1‑150 (MQ=255)

                                                         ggAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTg                                                                                             >  1:3971742/1‑150 (MQ=255)

                                                          gAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGc                                                                                            <  1:406603/150‑1 (MQ=255)

                                                                tcGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGa                                                                                      <  1:5786773/150‑1 (MQ=255)

                                                                  gTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACt                                                                                    >  1:7860700/1‑150 (MQ=255)

                                                                     cGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTAtt                                                                                 <  2:6543988/150‑1 (MQ=255)

                                                                            ggACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCAGACTACCGGCGCCTGGGCCAGGACATCTCGCTCAGTGTTGCTCAGGCCTATGCACCGGt                                                                          >  1:2173110/1‑150 (MQ=255)

                                                                              aCCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTgc                                                                        >  2:2285426/1‑150 (MQ=255)

                                                                                 tGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGcgcg                                                                     >  1:7557760/1‑150 (MQ=255)

                                                                                    aCATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAg                                                                  <  2:2457648/150‑1 (MQ=255)

                                                                                    aCATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAg                                                                  <  2:4166639/150‑1 (MQ=255)

                                                                                         cccAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTc                                                             <  1:5366750/150‑1 (MQ=255)

                                                                                         cccAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTc                                                             >  1:2387006/1‑150 (MQ=255)

                                                                                          ccAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTcc                                                            >  1:5147880/1‑150 (MQ=255)

                                                                                           cAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTCTTCACCGGTGCGCGAAGGTTTCCg                                                           >  1:6257053/1‑150 (MQ=255)

                                                                                           cAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCg                                                           >  1:6706474/1‑150 (MQ=255)

                                                                                           cAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCg                                                           >  1:4841995/1‑150 (MQ=255)

                                                                                            aaGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGa                                                          <  1:2988121/150‑1 (MQ=255)

                                                                                             aGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGTGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGAc                                                         <  2:2529303/150‑1 (MQ=255)

                                                                                             aGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGAc                                                         <  2:2192219/150‑1 (MQ=255)

                                                                                                  gCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTg                                                    >  1:2627180/1‑150 (MQ=255)

                                                                                                    aGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTgca                                                  <  2:5056108/150‑1 (MQ=255)

                                                                                                        cccGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGcagcag                                              >  2:1887233/1‑150 (MQ=255)

                                                                                                            ggCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTTCCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGa                                                                                      <  1:16638/106‑1 (MQ=255)

                                                                                                              cTTTCCGTTAGCCATGATCTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCTGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGCAGCAGATCGGc                                        <  1:8671233/150‑1 (MQ=255)

                                                                                                               tttCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGCAGCAGATCGGcc                                       >  2:1987817/1‑150 (MQ=255)

                                                                                                               tttCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGCAGCAGATCGGcc                                       >  2:321715/1‑150 (MQ=255)

                                                                                                                  ccGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGCAGCAGATCGGCCTgg                                    <  2:7829787/150‑1 (MQ=255)

                                                                                                                   cGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGCAGCAGATCGGCCTggg                                   >  1:416113/1‑150 (MQ=255)

                                                                                                                   cGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGCAGCAGATCGGCCTggg                                   >  1:2064785/1‑150 (MQ=255)

                                                                                                                        gCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGCAGCAGATCGGCCTGGGCATgg                              <  2:3371259/150‑1 (MQ=255)

                                                                                                                        gCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGCAGCAGATCGGCCTGGGCATgg                              >  2:5638990/1‑150 (MQ=255)

                                                                                                                          cATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACCTCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGCAGCAGATCGGCCTGGGCATGGGc                            >  2:7262235/1‑150 (MQ=255)

                                                                                                                          cATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGCCGGTTTCCGACGCTTGCAGCAGCTCGGCctgggcctgggc                            >  2:8238413/1‑150 (MQ=255)

                                                                                                                           aTGAACTCGGCCCGGAAGGCCAGCAACTGCTGACCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGCAGCAGATCGGCCTGGGCATGGGcc                           >  2:1226434/1‑150 (MQ=255)

                                                                                                                               aCTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGCAGCAGATCGGCCTGGGCATGGGCCtggt                       <  2:4545628/150‑1 (MQ=255)

                                                                                                                               aCTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGCAGCAGATCGGCCTGGGCATGGGCCtggt                       <  2:866808/150‑1 (MQ=255)

                                                                                                                                 tCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGCAGCAGATCGGCCTGGGCATGGGCCtggtgg                     >  2:6009705/1‑150 (MQ=255)

                                                                                                                                 tCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGCAGCAGATCGGCCTGGGCATGGGCCtggtgg                     >  1:6848712/1‑150 (MQ=255)

                                                                                                                                    gCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGCAGCAGATCGGCCTGGGCATGGGCCTGGTGgcgc                  <  1:5974554/150‑1 (MQ=255)

                                                                                                                                      ccGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGCAGCAGATCGGCCTGGGCATGGGCCTGGTGGCGCTg                <  1:1066778/150‑1 (MQ=255)

                                                                                                                                       cGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGCAGCAGATCGGCCTGGGCATGGGCCTGGTGGCGCTGa               <  1:8486041/150‑1 (MQ=255)

                                                                                                                                         gAAGGCCAGCACCTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGCAGCAGATCGGCCTGGGCATGGGCCTGGTGGCGCTGATc             <  2:5920037/150‑1 (MQ=255)

                                                                                                                                           aGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGCAGCAGATCGGCCTGGGCATGGGCCTGGTGGCGCTGATCCt           <  1:3768372/150‑1 (MQ=255)

                                                                                                                                           aGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGCAGCAGATCGGCCTGGGCATGGGCCTGGTGGCGCTGATCCt           <  2:842858/150‑1 (MQ=255)

                                                                                                                                           aGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGCAGCAGATCGGCCTGGGCATGGGCCTGGTGGCGCTGATCCt           <  1:4608358/150‑1 (MQ=255)

                                                                                                                                             gCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGCAGCAGATCGGCCTGGGCATGGGCCTGGTGGCGCTGATCCTGa         <  1:1602127/150‑1 (MQ=255)

                                                                                                                                             gCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGCAGCAGATCGGCCTGGGCATGGGCCTGGTGGCGCTGATCCTGa         <  1:6431931/150‑1 (MQ=255)

                                                                                                                                             gCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGCAGCAGATCGGCCTGGGCATGGGCCTGGTGGCGCTGATCCTGa         <  1:3372165/150‑1 (MQ=255)

                                                                                                                                             gCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGCAGCAGATCGGCCTGGGCATGGGCCTGGTGGCGCTGATCCTGa         <  1:224584/150‑1 (MQ=255)

                                                                                                                                             gCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGCAGCAGATCGGCCTGGGCATGGGCCTGGTGGCGCTGATCCTGa         <  1:4287798/150‑1 (MQ=255)

                                                                                                                                              ccAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGCAGCAGATCGGCCTGGGCATGGGCCTGGTGGCGCTGATCCTGAt        <  1:1404147/150‑1 (MQ=255)

                                                                                                                                               cAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGCAGCAGATCGGCCTGGGCATGGGCCTGGTGGCGCTGATCCTGAtt       <  1:7126793/150‑1 (MQ=255)

                                                                                                                                               cAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGCAGCAGATCGGCCTGGGCATGGGCCTGGTGGCGCTGATCCTGAtt       <  1:1147702/150‑1 (MQ=255)

                                                                                                                                                aGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGCAGCAGATCGGCCTGGGCATGGGCCTGGTGGCGCTGATCCTGATTc      >  2:7478892/1‑150 (MQ=255)

                                                                                                                                                   aaCTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGCAGCAGATCGGCCTGGGCATGGGCCTGGTGGCGCTGATCCTGATTCTgg   <  1:7664385/150‑1 (MQ=255)

                                                                                                                                                   aaCTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGCAGCAGATCGGCCTGGGCATGGGCCTGGTGGCGCTGATCCTGATTCTgg   <  2:2963424/150‑1 (MQ=255)

CCTATCAGCGGCCGTTTTCCGGTTACTACTTCCGCATCGATTTCGACCAGGGTACCTGGAGGTCTCGTTCGCTGTGGGACCTGGACATGCCCAAGCCCGCAGCGCCCGGGCTTTCCGATAGCCATGAACTCGGCCCGGAAGGCCAGCAACTGCTGGCCCTGCGTGCCGACTACCGGCGCCTGGGCCAGGACATCTCGATCAGTGTTGCTCAGGACTATTCACCGGTGCGCGAAGGTTTCCGACGCTTGCAGCAGATCGGCCTGGGCATGGGCCTGGTGGCGCTGATCCTGATTCTGGT  >  NC_002947/2682863‑2683160

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`