Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,441,192 G→A 5.7% L45L (CTG→CTA) ‡ gpI → tail formation protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,441,1920GA 5.7% 1353.8 / 42.7 423L45L (CTG→CTA) ‡gpItail formation protein
Reads supporting (aligned to +/- strand):  ref base G (198/201);  new base A (9/15);  total (207/216)
Fisher's exact test for biased strand distribution p-value = 2.96e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 459 total aligned reads displayed.

GTCGAAGGTGGTGACATGAGCCTGTTACCGCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTCGGCGGGTGCTCAAGGCGGTTCGGGTCAACGCGGA  >  NC_002947/3441043‑3441341
                                                                                                                                                     |                                                                                                                                                     
gTCGAAGGTGGTGACATGAGCCTGTTACCGCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCctggctg                                                                                                                                                       >  2:8020100/1‑150 (MQ=255)
 tCGAAGGTGGTGACATGAGCCTGTTACCGCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCGTGACCCGGACCTTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCctggctgg                                                                                                                                                      >  2:7856879/1‑150 (MQ=255)
 tCGAAGGTGGTGACATGAGCCTGTTACCGCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGACCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCctggctgg                                                                                                                                                      >  2:1937256/1‑150 (MQ=255)
   gAAGGTGGTGACATGAGCCTGTTACCGCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGcc                                                                                                                                                    >  2:4187286/1‑150 (MQ=255)
         ggtgACATGAGCCTGTTACCGCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCAGGCCAGCCAGGGCa                                                                                                                                              <  2:7474924/150‑1 (MQ=255)
          gtgACATGAGCCTGTTACCGCACATCGCCACCCAGTTTGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTGGACCCGGACATTATCCGGGGCGTGGCCGACTCGTAACGCGGCCCGCCGAACTTCCTGCCCTGGctgggctggggtt                                                                                                                                             <  1:1875648/150‑4 (MQ=255)
             aCATGAGCCTGTTACCGCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGa                                                                                                                                          >  1:4329185/1‑150 (MQ=255)
              cATGAGCCTGTTACCGCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGaa                                                                                                                                         <  2:6670869/150‑1 (MQ=255)
               aTGAGCCTGTTACCGCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAg                                                                                                                                        <  2:1747035/150‑1 (MQ=255)
                     cTGTTACCGCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCTGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAg                                                                                                                                  <  1:4718813/150‑1 (MQ=255)
                     cTGTTACCGCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAg                                                                                                                                  <  2:4655866/150‑1 (MQ=255)
                     cTGTTACCGCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAg                                                                                                                                  <  2:4603850/150‑1 (MQ=255)
                        ttACCGCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGc                                                                                                                               >  2:1683656/1‑150 (MQ=255)
                          aCCGCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTg                                                                                                                             <  1:5831933/150‑1 (MQ=255)
                            cGCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTggg                                                                                                                           >  2:5705214/1‑150 (MQ=255)
                            cGCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTggg                                                                                                                           >  1:2869826/1‑150 (MQ=255)
                            cGCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTggg                                                                                                                           >  1:5022059/1‑150 (MQ=255)
                             gCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCGGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGa                                                                                                                          <  2:2170803/150‑1 (MQ=255)
                              cacaACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAg                                                                                                                         <  1:6823130/150‑1 (MQ=255)
                                caACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAggc                                                                                                                       <  1:4166494/150‑1 (MQ=255)
                                  aCGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAggcgg                                                                                                                     <  1:109690/150‑1 (MQ=255)
                                   cGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCtggctggc                                                                                                                                                     >  1:1211953/1‑117 (MQ=255)
                                    gCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCt                                                                                                                   <  1:6208727/150‑1 (MQ=255)
                                    gCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTGGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCt                                                                                                                   <  1:1113351/150‑1 (MQ=255)
                                        cccAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTaca                                                                                                               <  1:3227496/150‑1 (MQ=255)
                                        cccAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTaca                                                                                                               >  2:2714561/1‑150 (MQ=255)
                                        cccAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTaca                                                                                                               <  2:4390629/150‑1 (MQ=255)
                                         ccAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTacac                                                                                                              >  1:7060844/1‑150 (MQ=255)
                                         ccAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTacac                                                                                                              <  2:8632195/150‑1 (MQ=255)
                                           aGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACcg                                                                                                            >  2:7053297/1‑150 (MQ=255)
                                            gTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACcga                                                                                                           >  2:6195005/1‑150 (MQ=255)
                                             ttGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACcgac                                                                                                          <  1:1687039/150‑1 (MQ=255)
                                                     cgcCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAgcg                                                                                                  >  2:6298399/1‑150 (MQ=255)
                                                           ggAGGCGGCCGCCGACCCGGCCCGCGCCCCGGCCAGGCTCCGGGGCGTGGCCGACTCGGCACGCTGCCCGCCGACCGGCCGGCCCGGGCGGGCCGGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCCTCCCCCGACGACCAGCGCcgcgc                                                                                            <  2:1790375/150‑1 (MQ=255)
                                                            gAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCcgcgcg                                                                                           >  2:1114995/1‑150 (MQ=255)
                                                               gcggcCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTg                                                                                        >  2:8203674/1‑150 (MQ=255)
                                                               gcggcCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTg                                                                                        >  2:683102/1‑150 (MQ=255)
                                                                 ggcCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCGCGGCGCTggt                                                                                      <  1:613885/150‑3 (MQ=255)
                                                                 ggcCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCGCGGCGCTggt                                                                                      <  2:7193742/150‑3 (MQ=255)
                                                                   ccgccgACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATcc                                                                                    >  1:3934977/1‑150 (MQ=255)
                                                                      ccgACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCGCGGCGCTGGTcgtcg                                                                                 <  2:812171/150‑5 (MQ=255)
                                                                       cgACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGa                                                                                <  1:6697398/150‑1 (MQ=255)
                                                                       cgACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGa                                                                                <  1:5071081/150‑1 (MQ=255)
                                                                       cgACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGa                                                                                <  1:1504936/150‑1 (MQ=255)
                                                                       cgACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGa                                                                                <  1:7520287/150‑1 (MQ=255)
                                                                       cgACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGa                                                                                <  2:6467818/150‑1 (MQ=255)
                                                                       cgACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGa                                                                                <  2:756748/150‑1 (MQ=255)
                                                                       cgACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGa                                                                                >  1:8725873/1‑150 (MQ=255)
                                                                        gACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGATCAGCGCGCGGCGCTGGTcgtcggt                                                                               <  1:7632197/150‑7 (MQ=255)
                                                                        gACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAg                                                                               >  1:7948040/1‑150 (MQ=255)
                                                                        gACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAg                                                                               >  1:5686825/1‑150 (MQ=255)
                                                                          ccTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGc                                                                             <  2:5496353/150‑1 (MQ=255)
                                                                            ttGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCa                                                                           <  2:4872897/150‑1 (MQ=255)
                                                                               gCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCTGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTc                                                                        <  1:1004631/150‑1 (MQ=255)
                                                                                ccTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTcc                                                                       >  2:694645/1‑150 (MQ=255)
                                                                                  ttGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCgg                                                                     >  2:2733339/1‑150 (MQ=255)
                                                                                  ttGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCgg                                                                     >  1:8104601/1‑150 (MQ=255)
                                                                                  acgccccGGATAATGTCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCgg                                                                     >  1:8211232/5‑150 (MQ=255)
                                                                                    gACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGtt                                                                   >  2:325770/1‑150 (MQ=255)
                                                                                    gACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGtt                                                                   >  2:3844187/1‑150 (MQ=255)
                                                                                     ccccGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCAGTCCGGTTc                                                                  >  2:6346539/2‑150 (MQ=255)
                                                                                     aCCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTc                                                                  <  2:83564/150‑1 (MQ=255)
                                                                                         ggACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTTCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACaa                                                              >  1:2423167/1‑150 (MQ=255)
                                                                                         ggACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACaa                                                              <  1:3037143/150‑1 (MQ=255)
                                                                                         ggACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACaa                                                              >  1:4543555/1‑150 (MQ=255)
                                                                                         ggACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACaa                                                              <  1:948934/150‑1 (MQ=255)
                                                                                         ggACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACaa                                                              >  2:5252521/1‑150 (MQ=255)
                                                                                         ggACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCGGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACaa                                                              >  1:1415379/1‑150 (MQ=255)
                                                                                            cATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGAc                                                           <  2:2460339/150‑1 (MQ=255)
                                                                                                aTCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAg                                                       >  2:8387441/1‑150 (MQ=255)
                                                                                                 tCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAgg                                                      <  1:2135366/150‑1 (MQ=255)
                                                                                                 tCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAgg                                                      >  1:8579391/1‑150 (MQ=255)
                                                                                                 tCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAgg                                                      >  1:2819118/1‑150 (MQ=255)
                                                                                                  ccGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAggg                                                     >  2:5375621/1‑150 (MQ=255)
                                                                                                   cGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGc                                                    >  1:5105723/1‑150 (MQ=255)
                                                                                                   cGGGGAGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGc                                                    >  1:1296551/1‑150 (MQ=255)
                                                                                                     gggCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCAc                                                  >  2:3098911/1‑150 (MQ=255)
                                                                                                           ggCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCgg                                            <  1:4871236/150‑1 (MQ=255)
                                                                                                            gCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGgc                                           >  1:1992149/1‑150 (MQ=255)
                                                                                                                aCTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGa                                       <  1:2253148/150‑1 (MQ=255)
                                                                                                                    gTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTcg                                   >  1:3122576/1‑150 (MQ=255)
                                                                                                                     tCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTcgg                                  <  2:7770309/150‑1 (MQ=255)
                                                                                                                        cGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTcggcgg                               <  2:2373671/150‑1 (MQ=255)
                                                                                                                          cTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTCGGCGGGt                             >  1:6512531/1‑150 (MQ=255)
                                                                                                                           tGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGCTTCGGCGGGTg                            >  2:6062912/1‑150 (MQ=255)
                                                                                                                                gccgAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTCGGCGGGTGCTCaa                       >  1:8377010/1‑150 (MQ=255)
                                                                                                                                ctcgAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTCGGCGGGTGCTCaa                       >  2:3736194/3‑150 (MQ=255)
                                                                                                                                 ccgAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTCGGCGGGTGCTCAAg                      >  2:1411944/1‑150 (MQ=255)
                                                                                                                                  cgAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTCGGCGGGTGCTCAAgg                     >  1:5371411/1‑150 (MQ=255)
                                                                                                                                   gAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTCGGCGGGTGCTCAAGGc                    >  2:7284817/1‑150 (MQ=255)
                                                                                                                                     aCTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTCGGCGGGTGCTCAAGGCgg                  <  1:3689571/150‑1 (MQ=255)
                                                                                                                                     aCTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTCGGCGGGTGCTCAAGGCgg                  >  2:4346288/1‑150 (MQ=255)
                                                                                                                                       ttCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTCGGCGGGTGCTCAAGGCGGtt                >  2:3416123/1‑150 (MQ=255)
                                                                                                                                       ttCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGACTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTCGGCGGGTGCTCAAGGCGGtt                >  1:1353708/1‑150 (MQ=255)
                                                                                                                                          cTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTCGGCGGGTGCTCAAGGCGGTTCgg             >  1:5522214/1‑150 (MQ=255)
                                                                                                                                            gCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTCGGCGGGTGCTCAAGGCGGTTCGGGt           >  2:2112135/1‑150 (MQ=255)
                                                                                                                                               ctggctggCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTCGGCGGGTGCTCAAGGCGGTTCGGGTCaa        >  2:5893112/1‑150 (MQ=255)
                                                                                                                                                tggctggcCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTCGGCGGGTGCTCAAGGCGGTTCGGGTCAAc       <  1:598874/150‑1 (MQ=255)
                                                                                                                                                    tggcCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTCGGCGGGTGCTCAAGGCGGTTCGGGTCAACGCgg   >  2:504085/1‑150 (MQ=255)
                                                                                                                                                    tggcCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTCGGCGGGTGCTCAAGGCGGTTCGGGTCAACGCgg   <  1:7348451/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
GTCGAAGGTGGTGACATGAGCCTGTTACCGCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGCTGCCCGCCGAACTTCCTGCCCTGGCTGGCCTGGGCATGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCGCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTCGGCGGGTGCTCAAGGCGGTTCGGGTCAACGCGGA  >  NC_002947/3441043‑3441341

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑