| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,583,420 | T→A | 12.1% | intergenic (+105/‑219) | PP_3158 → / → PP_5589 | hypothetical protein/rhs repeat‑associated core domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,583,420 | 0 | T | A | 12.1% | 810.6 / 48.7 | 322 | intergenic (+105/‑219) | PP_3158/PP_5589 | hypothetical protein/rhs repeat‑associated core domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base T (130/144); new base A (36/9); total (169/153) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.28e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 340 total aligned reads displayed.
ACGCGCAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACAATGGT > NC_002947/3583272‑3583569 | cgcAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑Attttt < 1:5467181/150‑1 (MQ=255) gcAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTg < 2:3553334/150‑1 (MQ=255) gcAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTg > 2:8756062/1‑150 (MQ=255) ctgagCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGACATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGc < 1:500421/148‑1 (MQ=255) cAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGc < 2:6291178/150‑1 (MQ=255) gagCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCa < 1:8460872/150‑1 (MQ=255) ccTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGtt < 2:7000934/150‑1 (MQ=255) ccTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGtt < 2:8257457/150‑1 (MQ=255) ccTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑AAAAATGCCAGtt < 2:218259/150‑1 (MQ=255) ccTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCGGCCACAGGC‑Cttttttacaggt > 1:904708/1‑143 (MQ=255) cTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGtt < 1:5707861/149‑1 (MQ=255) cTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGtt > 2:5707861/1‑149 (MQ=255) gTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑AAAAATGCCAGTTGCa < 1:229472/150‑1 (MQ=255) gTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑AAAAATGCCAGTTGCa < 2:4802354/150‑1 (MQ=255) ttGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAAATGGC‑ATTTTTGCCAGTTGCAg > 1:8296525/1‑150 (MQ=255) tGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGc < 1:3032713/150‑1 (MQ=255) cTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGa < 1:7971296/150‑1 (MQ=255) cTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGC‑ATATTTGCCAGTTGCAGCGa > 1:594119/1‑150 (MQ=255) atgaACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAgtg > 2:1446641/1‑150 (MQ=255) gaACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTTCAAATGGC‑AATTTTGACAGTTGCAGCGAGTGTa > 2:3329469/1‑150 (MQ=255) aaCTTCCTGCCGGTGCTGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCAATACATGATTGAGTATTGAGTTTATGTGTGTTCATGAGCGAATCAAGTTTTCGTGGGGCTGAAACTGGA‑TTTTTTGCCTGTTGCAGCGAGTGTAt < 1:6174635/150‑1 (MQ=255) tcTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGC‑ATTTTTTGCAGTTGCAGCGAGTGTTTg > 1:2208087/2‑150 (MQ=255) cTTCCTGCCGGTGCAGTAAGAGGCCTCGGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGTTTTGAGTTGTTGTGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGA‑TTTTTTGCCTGTTGCAGCGAGTGTATGa < 1:4841234/150‑1 (MQ=255) cGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTTCCACTTGCAGCGAGTGTATGACCGCCGAg > 2:1867887/1‑150 (MQ=255) cGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAAATGGC‑ATTTTTGCCAGTTGAAGCGAGTGTATTACAGCCTAg > 2:5182330/1‑150 (MQ=255) ggTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGa < 1:5849060/150‑1 (MQ=255) tGCAGTAAGAGGCCTCGGCCGCACGCCCTTTGCGAAATGCCCCTACATGAATGCGGATTGAGTTGAGGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCGAGAAt < 2:6901355/150‑1 (MQ=255) ttAAGAGGCCTCTGCCGCACGCCCTTTGCTAAATGCCCATACATTATTGAGGTTTGATTTGATGTGTTTTCATGAGCTAATAAACGTTTCGTCGGGCTGAAACTGGC‑ATTTTTGCCTGTTGCAGCGAGTGTATGACAGCCTAGAATTCaa < 1:2493055/149‑1 (MQ=255) gagGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTTCAGCGAGTGTATGAAAGCCTAGAAATCAAGGGa > 2:7464393/1‑150 (MQ=255) gagGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAAATGGC‑ATTTTTTCCAGTTGCAGCGAGTGTATGACAGCCAAGAAATAAAGGGa > 2:4195798/1‑150 (MQ=255) agGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTTCCAGTTGCAGCGAGTGTATTACAGCCGAGAATTCAAGGGaa > 1:633299/1‑150 (MQ=255) ccTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGC‑ATTTTTTGCAGTTGCAGCCAGTTTTTTACAGCCGAGAAATCAATGGaaaag > 1:5145675/1‑148 (MQ=255) tctGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTTCAGCGAGTGTATGACAGCCTAGAATTAAGGGGAAATGgt > 2:5852454/1‑150 (MQ=255) ctGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGAGTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCACCACGC‑AATTTTGCCAGTTTCAGCGCGTGTATTAAAGCCGAGAAATAAACGGAAAAGgtg > 1:1922394/1‑150 (MQ=255) cACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCAGCAAATGGC‑AATTTTTCCACTTGCAGCGAGTGTATGAAAGCCTAGAAATCAATGGAAAAGGTGTTatct > 2:5783803/1‑150 (MQ=255) aCGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGC‑CTTTTTTGCAGTTTCAGCGCGTGTATTAAAGCCGAGAAATAAATGGAAATGGTGTTgtctc > 1:168202/1‑149 (MQ=255) cGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTaa < 2:4303187/150‑1 (MQ=255) gCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCTAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAg < 2:1821704/150‑1 (MQ=255) gCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTTCCAGTTGCAGCGAGTGTATGACAGCCGAGAATTCAAGGGCAATGGTGTTCTCTAAg > 2:6824904/1‑150 (MQ=255) gCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAg > 2:5061843/1‑150 (MQ=255) gCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAg < 2:787463/150‑1 (MQ=255) ccTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTTCAACAGGC‑AATTTTGCCAGTTGCAGCGAGTGTATTACAGCCAAGAATTAAAGGGAAATTGTGTTATCTAAGGt > 1:1304442/1‑150 (MQ=255) ccTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAAAGGGC‑ATGTTTTCCACTTGCAGCGCGTGTATTACAGCCTAGAAAAAAAGGGAAAAGGTGTTCTCTTAGGt > 1:4938970/1‑150 (MQ=255) tttGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCAATTTTTGCACGTT‑CCGCGAGTGTATGTAAGCCGAGAAATGAAGGGGAATGGTGGTGTCTGAGGTCa > 1:1097508/1‑150 (MQ=255) cGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGC‑AATTTTTCCACTTTCAGCGAGTGTATGACAGCCGAGAATTAAAGGGAAAATGTGTTGTCTAAGGTCATTaa > 2:382081/1‑150 (MQ=255) aggCCCATACTTGATTGAGTATTTTGTTGATGAGTGTTCATGAGCGAAACAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGt < 1:4682338/148‑1 (MQ=255) aTGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCTAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGt < 2:4091474/150‑1 (MQ=255) aTGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGt < 1:1998411/150‑1 (MQ=255) ccccATACATCAATGAGGATTGAGTTGATCAGTGTTCATGACCGAAAAAACGTTTCGTCGGGCTGCAACTCGC‑ATTTTTGCCAGTTCCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGa < 1:4183194/149‑1 (MQ=255) ccATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGC‑AATTTTGCCAGTTTCAGCGAGTGTATTACAGCCAAGAATTAAAGGGAAATGGTGTTCTCTAAGGTCATTAATAGTGaaa > 1:3520120/1‑150 (MQ=255) cATACATGTATGAGGATTGAGTTGAGGAGTGTTCATGAGCGAATCAAGGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAAc < 2:8603167/150‑1 (MQ=255) cATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAAc < 1:3323384/150‑1 (MQ=255) aTACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAAAGATTCGTCGGGCTGAAACAGGC‑AATTTTTCCAGATGCAACCAGATTCATACAGCCTACAATTAAAAGGAAATGGTGTTCTATAACATCAATAATCTTGaaaaa > 2:5150948/1‑148 (MQ=255) aCATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGtt < 1:8729520/150‑1 (MQ=255) cATGACTGCGGTTTGTGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGGCGGGCTGCACCTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTc < 2:1668252/150‑1 (MQ=255) cATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTc < 2:8030733/150‑1 (MQ=255) gaatgaGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTATAAATCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCa > 1:7300178/1‑150 (MQ=255) atgtGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAg < 1:7776157/150‑1 (MQ=255) atgaGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGAAACGGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAg < 1:1816833/150‑1 (MQ=255) gaGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCg < 2:1970657/150‑1 (MQ=255) aGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGt < 2:1056707/150‑1 (MQ=255) ggATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGC‑AATTTTGCCACTTTCAGCGAGTGTATGACAGCCTAGAATTAAAGGGAAATGGTGTTATCTAAGGTCATTAATAGTGAAACGTTAGCAAGCGTa > 2:3765571/1‑150 (MQ=255) gATTTATTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTac < 1:7140940/150‑1 (MQ=255) gatgcGTGTTCATGCGCTAATAAACGTTGCGTCGGGCTGCAACTGGC‑ATTTTTGCCCGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTAc < 1:3670219/150‑1 (MQ=255) gatgaGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAAAAGGC‑ATTTTTTCCAGTTGCAGCGCGTGTATGACAGCCAAGAAATCAAGGGAAAAGGTGTTCTATAAGGTCAATAAACGTGAAAAGTGCGCAAGCGGACACGCCCGAc > 2:8529200/1‑150 (MQ=255) tgaGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACgg < 2:303787/150‑1 (MQ=255) tgaGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAAATGGC‑ATTTTTTCCAGTTGCAGCGAGTGTATGACAGCCGAGAATTCAAGGGAAATGGTGTTCTATAAGGTCATTAATAGTGAAAAGTTCGCAAGCGTACACGCCCTACgg > 2:6483265/1‑150 (MQ=255) cATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTAttt < 2:615946/150‑1 (MQ=255) tGAGCTAATCAACTTTTCGTCGGGCTGCAACTGGA‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTgg < 1:1170894/150‑1 (MQ=255) gAGCTAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTggg < 2:3413097/150‑1 (MQ=255) cGAATCAACGTTTCGGCGGGCTGCAACTGGA‑ATTTTTGCCTGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTg < 1:6660663/150‑1 (MQ=255) aTCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATg < 2:4271465/150‑1 (MQ=255) tCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATgg < 1:2081301/150‑1 (MQ=255) cAACGTTTCGTCGGGCTGCAACATGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCAAGAATTAAAGGGAAATGGTGTTCTCTAATGTCATTAATCGTGAAAAGTTGGCAAGCGTACATGCCCTTCCGCGCTATTTGGGGtggtggg > 1:4320965/1‑149 (MQ=255) tttCGTCGGGCTGCAACAGGC‑ATTTTTGCCAGTTTCAGCGAGTGTATGACAGCCTAGAAATAAAGGGAAAAGGTGTTCACTAAGGTCCATAATAGTGAAAACTTAGCAAGCGTAAACCCCCTAACGCGCGATTTTGGGTGATGGCCAATg > 2:2083910/1‑150 (MQ=255) gtcgGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTcc < 1:4096541/150‑1 (MQ=255) cgGGCTTCAACTGGC‑ATTTTTTCCACTTGCAGCGATTGTATTACACCCTAGAATTCAAGGGAAATGGTTTTATCTAAGGTCAATAATCGTTAAAAGTTAGCAAGCGTACACGCCCTACGGCGCTATATGGGGTGATGGCCATAGCACCgt > 2:2245032/1‑150 (MQ=255) gggCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCgtg < 2:8118033/150‑1 (MQ=255) gCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGtt < 1:3442380/150‑1 (MQ=255) tGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGa < 2:904708/150‑1 (MQ=255) tGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGa > 2:2373428/1‑150 (MQ=255) tGCAACTGGC‑ATTTTTGCCAGTTGAAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGa < 1:7664611/150‑1 (MQ=255) tGCAACTGGC‑AAAAATGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTgt > 2:5419262/1‑149 (MQ=255) tGCAACTGGC‑AAAAATGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGa > 1:7581746/1‑150 (MQ=255) tGCAACTGGC‑AAAAATGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGa > 1:7105298/1‑150 (MQ=255) tGCAACTGGC‑AAAAATGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGa > 2:4917427/1‑150 (MQ=255) cAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAg > 1:3773672/1‑150 (MQ=255) cAACTGGC‑AAAAATGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAg > 2:2762241/1‑150 (MQ=255) cAACTGGC‑AAAAATGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAg > 2:8476659/1‑150 (MQ=255) aaCTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTAttt < 1:2735650/120‑1 (MQ=255) aCTGGA‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTa < 1:4501106/150‑1 (MQ=255) tGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACa > 1:5588320/1‑150 (MQ=255) tGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACa > 2:7762764/1‑150 (MQ=255) tGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACa > 2:2570579/1‑150 (MQ=255) ggC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACaa < 2:1253047/150‑1 (MQ=255) gC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACAAt > 1:5277148/1‑150 (MQ=255) gC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACAAt > 2:2925690/1‑150 (MQ=255) aTTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACAATgg > 2:4542660/1‑150 (MQ=255) tttttGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTTCGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACAATGGt < 2:2208087/150‑1 (MQ=255) tttttGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACAATGGt < 2:6780715/150‑1 (MQ=255) | ACGCGCAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACAATGGT > NC_002947/3583272‑3583569 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |