| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,583,421 | T→A | 6.0% | intergenic (+106/‑218) | PP_3158 → / → PP_5589 | hypothetical protein/rhs repeat‑associated core domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,583,421 | 0 | T | A | 6.0% | 1039.3 / 33.1 | 322 | intergenic (+106/‑218) | PP_3158/PP_5589 | hypothetical protein/rhs repeat‑associated core domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base T (157/144); new base A (11/9); total (169/153) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.22e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 343 total aligned reads displayed.
ACGCGCAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACAATGGTG > NC_002947/3583272‑3583570 | cgcAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑Attttt < 1:5467181/150‑1 (MQ=255) gcAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTg < 2:3553334/150‑1 (MQ=255) gcAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTg > 2:8756062/1‑150 (MQ=255) gcAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTg > 1:4245388/1‑150 (MQ=255) cAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGACTGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGc < 2:6291083/150‑1 (MQ=255) gagCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCa < 1:8460872/150‑1 (MQ=255) ccTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGtt < 2:8257457/150‑1 (MQ=255) ccTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑AAAAATGCCAGtt < 2:218259/150‑1 (MQ=255) ccTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCGGCCACAGGC‑Cttttttacaggt > 1:904708/1‑143 (MQ=255) ctgttgctgttgAACTTCCTGCCGGTGCAGTAAGTGTCCTCTGCCGCACGCCCTTTGAGAAATGCCCATAGATGAATGATGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑AAAAATGCCAGTTg < 2:4998327/150‑1 (MQ=255) tGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTTCCAGTTGc > 2:4222564/1‑150 (MQ=255) gTTGCTGATGAACTTCCTGCCGGTGCAGTACGAGGCCTCTGCCGCTCGCCCTTGGCGAAATGCCCATACATGAATGAGGATTGAGTTGAGGAGTGTTCAGGAGCGAATCAACGTTTCGTCGCGCTGCAACTGGC‑AAAAATGCCAGTTGCa < 2:7692798/150‑1 (MQ=255) ttGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAAATGGC‑ATTTTTGCCAGTTGCAg > 1:8296525/1‑150 (MQ=255) tGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGc < 1:3032713/150‑1 (MQ=255) cTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGC‑ATATTTGCCAGTTGCAGCGa > 1:594119/1‑150 (MQ=255) aaCTTCCTGCCGGTGCTGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCAATACATGATTGAGTATTGAGTTTATGTGTGTTCATGAGCGAATCAAGTTTTCGTGGGGCTGAAACTGGA‑TTTTTTGCCTGTTGCAGCGAGTGTAt < 1:6174635/150‑1 (MQ=255) cTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGC‑ATTTTTTCCAGTTGCAGCGAGTGTATGa > 1:2651459/1‑150 (MQ=255) ccTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAg > 2:3442380/1‑150 (MQ=255) tGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTTCAACAGGC‑ATTTTTGACAGTTGCAGCGAGTGTATGACAGcc > 2:8091178/1‑150 (MQ=255) tGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGcc > 2:2934521/1‑150 (MQ=255) cGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAAATGGC‑ATTTTTGCCAGTTGAAGCGAGTGTATTACAGCCTAg > 2:5182330/1‑150 (MQ=255) ggTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGa < 1:5849060/150‑1 (MQ=255) ggTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGa < 2:6579249/150‑1 (MQ=255) ggTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGa < 2:6970625/150‑1 (MQ=255) gTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGCGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGaa < 2:2219665/150‑1 (MQ=255) tGCAGTAAGAGGCCTCGGCCGCACGCCCTTTGCGAAATGCCCCTACATGAATGCGGATTGAGTTGAGGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCGAGAAt < 2:6901355/150‑1 (MQ=255) gagGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTTCAGCGAGTGTATGAAAGCCTAGAAATCAAGGGa > 2:7464393/1‑150 (MQ=255) agGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTTCCAGTTGCAGCGAGTGTATTACAGCCGAGAATTCAAGGGaa > 1:633299/1‑150 (MQ=255) agGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCAGCAACAGGC‑ATTTTTTCCAGTTGCATCGAGTGTATGACAGCCTAGAATTAAAGGGaa > 2:4843531/1‑150 (MQ=255) gCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTTCAGCGAGTGTATGACAGCCGAGAATTCAAGGGGAAt > 2:1883811/1‑150 (MQ=255) ccTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGC‑ATTTTTTGCAGTTGCAGCCAGTTTTTTACAGCCGAGAAATCAATGGaaaag > 1:5145675/1‑148 (MQ=255) ctctGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCGGCAACATGC‑ATTTTTTCCACTTGCAGCGAGTGTATTACAGCCGAGAAATAAAGGGAAAAgg > 1:477864/1‑150 (MQ=255) tctGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑CTTTTTTCCAGGTGCAGCGAGTGTATGACAGCCGAGAATTCAAGGGAAATGgt > 1:3483923/1‑150 (MQ=255) tctGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCAAGAATTCAAGGGAAATGgt > 1:2157310/1‑150 (MQ=255) tctGCCACACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAAAAGGC‑ATTTTTTCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGgt > 2:1447414/1‑150 (MQ=255) ctGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGgtg > 1:6780715/1‑150 (MQ=255) ctGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGAGTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCACCACGC‑AATTTTGCCAGTTTCAGCGCGTGTATTAAAGCCGAGAAATAAACGGAAAAGgtg > 1:1922394/1‑150 (MQ=255) aCGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGC‑CTTTTTTGCAGTTTCAGCGCGTGTATTAAAGCCGAGAAATAAATGGAAATGGTGTTgtctc > 1:168202/1‑149 (MQ=255) gCCCTTTGCTAAATGCCCAAACATGAATGAGGTTTTTGTTGATGAGTGTTCTTGAGCTAATAAAGTTTTCGTCGGGCTGAAACTGGA‑ATTTTTGCCTGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAg < 1:3946962/150‑1 (MQ=255) gCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCTAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAg < 2:1821704/150‑1 (MQ=255) gCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAg < 2:787463/150‑1 (MQ=255) ccTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTTCAACAGGC‑AATTTTGCCAGTTGCAGCGAGTGTATTACAGCCAAGAATTAAAGGGAAATTGTGTTATCTAAGGt > 1:1304442/1‑150 (MQ=255) ccTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGt > 2:5822574/1‑150 (MQ=255) ccTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAAAGGGC‑ATGTTTTCCACTTGCAGCGCGTGTATTACAGCCTAGAAAAAAAGGGAAAAGGTGTTCTCTTAGGt > 1:4938970/1‑150 (MQ=255) tttGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCAATTTTTGCACGTT‑CCGCGAGTGTATGTAAGCCGAGAAATGAAGGGGAATGGTGGTGTCTGAGGTCa > 1:1097508/1‑150 (MQ=255) cGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGC‑AATTTTTACAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTaa > 2:382130/1‑150 (MQ=255) aggCCCATACTTGATTGAGTATTTTGTTGATGAGTGTTCATGAGCGAAACAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGt < 1:4682338/148‑1 (MQ=255) aTGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGt < 2:4354522/150‑1 (MQ=255) aTGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGt < 1:1998411/150‑1 (MQ=255) ccccATACATCAATGAGGATTGAGTTGATCAGTGTTCATGACCGAAAAAACGTTTCGTCGGGCTGCAACTCGC‑ATTTTTGCCAGTTCCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGa < 1:4183194/149‑1 (MQ=255) cATACATGTATGAGGATTGAGTTGAGGAGTGTTCATGAGCGAATCAAGGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAAc < 2:8603167/150‑1 (MQ=255) aTACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGC‑ATTTTTTCCAGTTGCAGCGAGTGTATGACAGCCGAGAATTCAAGGGAAAAGGTGTTCTATAAGGTCAATAAACGTTAAACg > 2:5150889/1‑150 (MQ=255) aCATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGtt < 2:4283212/150‑1 (MQ=255) aCATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGtt < 1:8729520/150‑1 (MQ=255) cATGACTGCGGTTTGTGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGGCGGGCTGCACCTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTc < 2:1668252/150‑1 (MQ=255) cATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTc < 2:8030733/150‑1 (MQ=255) gaatgaGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTATAAATCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCa > 1:7300178/1‑150 (MQ=255) aatgaGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCaa < 1:7997719/150‑1 (MQ=255) atgtGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAg < 1:7776157/150‑1 (MQ=255) atgaGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGAAACGGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAg < 1:1816833/150‑1 (MQ=255) gaGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCg < 2:1970657/150‑1 (MQ=255) ggATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTTCAACAGGC‑AATTTTGCCACTTGCAGCGAGTGTATGACAGCCTAGAATTAAAGGGAAATGGTGTTCTCTAAGGTCATTAATAGTGAAAAGTTAGCAAGCGTa > 2:3765863/1‑150 (MQ=255) ggATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTTGC‑ATTTTTTCCAGTTTCAGCGAGTGTATTAAAGCCAAGAATTAAAGGGAAATGGTGTTCTCTAATGTCATTAATAGTGAAAAGTTCGCAAGCGTa > 2:5385290/1‑150 (MQ=255) gATTTATTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTac < 1:7140940/150‑1 (MQ=255) gatgaGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAAAAGGC‑ATTTTTTCCAGTTGCAGCGCGTGTATGACAGCCAAGAAATCAAGGGAAAAGGTGTTCTATAAGGTCAATAAACGTGAAAAGTGCGCAAGCGGACACGCCCGAc > 2:8529200/1‑150 (MQ=255) atgaGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGC‑AATTTTGCCCGTTGCAGCGAGTGTATTACAGCCTAGAAATAAAGGGAAAAGGTGTTCTCTAAGGTCAATAATAGGGAAAAGTTAGCAAGCGTAAACCCCCGACg > 2:1139886/1‑150 (MQ=255) atgaGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAAAAGGC‑AATTTTTCCAGTTGCAGCGAGTGTTTGACAGCCGAGGATTCAAGGGTCATGGTGTTGTCTAAGGTCATTAATAGTGGAACGTTCGCAACCGTACACCCCCAACg > 2:68145/1‑150 (MQ=255) tgaGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAAATGGC‑ATTTTTTCCAGTTGCAGCGAGTGTATGACAGCCGAGAATTCAAGGGAAATGGTGTTCTATAAGGTCATTAATAGTGAAAAGTTCGCAAGCGTACACGCCCTACgg > 2:6483265/1‑150 (MQ=255) gtTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTa < 2:3233072/150‑1 (MQ=255) cATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTAttt < 2:615946/150‑1 (MQ=255) tGAGCTAATCAACTTTTCGTCGGGCTGCAACTGGA‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTgg < 1:1170894/150‑1 (MQ=255) tGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTTCCAGTTGCAGCGAGTGTATGACAGCCTAGAAATCAAGGGGAATGGTGTTGTCTAAGGTCATTAATCGTGAAAAGTTCGCAAGCGTAAACGCCCAACGGCGCGATTTgg > 1:5002442/1‑150 (MQ=255) tGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTgg < 2:5776580/150‑1 (MQ=255) gAGCTAATCAACGTTTCGTCGGGCTGCAACTGGA‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTggg < 1:5622811/150‑1 (MQ=255) aGCGAATCAACGTTTCGTCGGGCTGCAACAGGC‑AATTTTTCCAGTTTCAGCGAGTGTATTACAGCCGATAATTAAAGGGAAAATGTGTTATCTAAGGTCATTAATAGTGAAAAGTTCGCAAGCGTACACGCCCAACGGCGCGATTTgggg > 1:3605228/1‑150 (MQ=255) ctaaTCAACGTTTGGTCGGGCTGCAACTGGC‑ATTTTTGCCTTTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTg < 1:2219641/148‑1 (MQ=255) tCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATgg < 1:2081301/150‑1 (MQ=255) tCAACGTTTCGTCGGGCTGCAACAGGC‑ATTTTTTCCAGTTTCAGCGAGTGTATGTCAGCCTAGAATTAAAGGGAAATGGTGTTCTCTAAGGTCATTAATAGTGTAAAGGTAGCAAGCGTACACGCCCTAAGGCGCGATTTGGGGTGTTgg > 2:4793260/1‑150 (MQ=255) cAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGc < 2:8417916/150‑1 (MQ=255) aaCGTTTCGTCGGGCTGCAACATGC‑AATTTTTCCAGTTTCAGCCAGTGTATGAAACCCTAGAAATAAATGGAAAAGGTGTTATCTAAGGTCAATAATAGTGAAAACTTAGCAAGAGTACACCCCCAACGGCGCTAATTGGGGTGATTGcc > 2:3348458/1‑150 (MQ=255) gtcgGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTcc < 2:2115622/150‑1 (MQ=255) gCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGtt < 1:3442380/150‑1 (MQ=255) tGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGa < 2:904708/150‑1 (MQ=255) tGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGa > 2:2373428/1‑150 (MQ=255) tGCAACTGGC‑ATTTTTGCCAGTTGAAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGa < 1:7664611/150‑1 (MQ=255) tGCAACTGGC‑AAAAATGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGa > 1:7105298/1‑150 (MQ=255) tGCAACTGGC‑AAAAATGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGa > 1:7581746/1‑150 (MQ=255) gCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGaa < 2:2330357/150‑1 (MQ=255) cAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAg > 1:3773672/1‑150 (MQ=255) cAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAg < 1:247740/150‑1 (MQ=255) cAACTGGC‑AAAAATGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAg > 2:2762241/1‑150 (MQ=255) aaCTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTAttt > 2:2735650/1‑120 (MQ=255) aCTGGA‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTa < 1:4501106/150‑1 (MQ=255) tGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACa > 1:5588320/1‑150 (MQ=255) ggC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACaa < 2:1253047/150‑1 (MQ=255) ggaaTTTTTGCCATTTGCAGCGAGTGTATGACAGCATAGAATTCAAGTGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGTTGATGGCCATTGCTCCGTGTTGAAGTACaa < 1:3226409/147‑1 (MQ=255) gC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACAAt > 2:4162705/1‑150 (MQ=255) gC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACAAt > 1:5277148/1‑150 (MQ=255) c‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGGTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACAATg < 2:5597560/150‑1 (MQ=255) ttttGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACAATGGTg > 2:4362812/1‑150 (MQ=255) | ACGCGCAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGC‑ATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACAATGGTG > NC_002947/3583272‑3583570 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |