| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,901,419 | G→A | 6.2% | intergenic (+58/‑150) | PP_4304 → / → sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,901,419 | 0 | G | A | 6.2% | 953.2 / 33.9 | 308 | intergenic (+58/‑150) | PP_4304/sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein |
| Reads supporting (aligned to +/- strand): ref base G (142/147); new base A (11/8); total (153/155) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.87e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.88e-01 | |||||||||||
Only 100 of 317 total aligned reads displayed.
AGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAAC > NC_002947/4901270‑4901568 | aTGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑Cgg > 2:6409404/1‑150 (MQ=255) gttcttgaagggtgttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCG‑CGGGTAAACCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTc > 2:5242212‑M1/98‑150 (MQ=255) gATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTc < 2:4081032/150‑1 (MQ=255) gATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTc < 2:6992937/150‑1 (MQ=255) gATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTc < 1:3231689/150‑1 (MQ=255) cttGCCCGACCTGCCACAAGACGACCCACGAGCAGGGGGCGGCGTTCTGTGCTCGCGGTGGGACGGGGGTGTTTCCCAACGCGGGAGAGCGCCGGCGCCGGCCTCTTCG‑CGGGTAAATCC‑GCGCCTACCGGCGCGGACCGTGCG‑CGGTcc < 2:6319343/149‑1 (MQ=255) agtGCCCGACCTGCCACAAGAAGGCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTcc < 1:6522328/148‑1 (MQ=255) ttGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTcc‑‑‑c < 2:3676032/150‑1 (MQ=255) gCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTcc‑‑‑ccc < 2:20972/150‑1 (MQ=255) gaagggtgttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCG‑CGGGTAAACCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGt > 2:4927627‑M1/92‑150 (MQ=255) aagggtgttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTa < 2:2630191‑M1/60‑1 (MQ=255) gACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAg < 2:81161/150‑1 (MQ=255) gACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAg < 2:8386979/150‑1 (MQ=255) gACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAg < 1:3790592/150‑1 (MQ=255) agggtgttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAg > 2:3793495‑M1/90‑150 (MQ=255) aCCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAgg < 2:1804102/150‑1 (MQ=255) ggtgttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCG‑CGGGTAAACCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGa > 2:5182335‑M1/88‑150 (MQ=255) ccACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACAGGTGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCgg < 2:7312676/150‑1 (MQ=255) ccACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCgg < 2:7349431/150‑1 (MQ=255) tggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCG‑CGGGTAAACCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCggg > 2:1224093‑M1/83‑150 (MQ=255) cacaAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCggg < 2:537064/150‑1 (MQ=255) cacaAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCGCGTCG‑CGGGTGAATAC‑GCTCCAACACGCGCGGCCCCGGCG‑CGGGGC‑‑‑CCCCGAGGGGCggg > 1:1084287/1‑150 (MQ=255) acaAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTAAAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGGAGGAGCGGGt < 2:1703812‑M2/150‑2 (MQ=255) aagaagACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGttt > 1:5841762‑M2/1‑147 (MQ=255) aagaagACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCAACAGGCGCGGACCCGGCG‑CGGTCC‑‑‑CCCGGAGGAGCGGGttt < 2:2221498‑M2/150‑4 (MQ=255) gaagaCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGtttac > 1:137058‑M2/1‑145 (MQ=255) gaagaCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAACCC‑GCTCCTACGGG‑‑‑GGACCGCGCA‑CGGTCCGCGCCTGTAGGAGCGGAtttac > 2:5490137‑M2/1‑145 (MQ=255) gaagaCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCGCTTCG‑CGGGTAAAAAC‑GCTCCGACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGgttac < 1:2779351‑M2/150‑6 (MQ=255) cagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgcGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGTTTAc > 2:5851404‑M1/78‑150 (MQ=255) agaCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGtttaccc > 1:958377‑M2/1‑143 (MQ=255) aCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAACCC‑GCTCCTACGGG‑‑‑GGACCGCGCA‑CGGTCCGCGCCTGTAGGAGCGGAtttacccgc > 1:2301224‑M2/1‑141 (MQ=255) aCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAACCC‑GCTCCTACGGG‑‑‑GGACCGCGCA‑CGGTCCGCGCCTGTAGGAGCGGAtttacccgc > 1:5502825‑M2/1‑141 (MQ=255) cccACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAACGCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGtttacccgcg > 2:478997‑M2/1‑140 (MQ=255) ccACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGtttacccccga < 2:7630081‑M2/150‑12 (MQ=255) ccACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCCCGTCGCCGGGGAAAAAC‑‑CGCCAACAAGCGCCGACCGGGGGCCGGGCC‑‑‑CCCG‑AGGAGCCGGGTTAccccccc > 1:1544290/1‑146 (MQ=255) cACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAACCC‑GCTCCTACGGG‑‑‑GGACCGCGCA‑CGGTCCGCGCCTGTAGGAGCGGAtttacccgcgaa > 2:3137830‑M2/1‑138 (MQ=255) cagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGc > 1:7613165‑M1/70‑134 (MQ=255) aCGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACCGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGtttacccgcgaag > 1:5240181‑M2/1‑137 (MQ=255) gAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGtttacccgcgaagag > 1:3542728‑M2/1‑135 (MQ=255) actataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCGGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACCGGCGCGGACCGTGCG‑CGGGCC‑‑‑CCCTTAGGAGCGGGTTTACCCGCGAAGAGGcc > 1:8537058‑M1/65‑150 (MQ=255) gcggcgTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCGCGTAG‑CGGGTAAATCC‑CCACCAACACGCGCGGACCCTGCG‑CGGGCC‑‑‑CCCCGAGGAGCGGGTTTACCCGCGCACAGGCCCGcccc > 2:1564775/1‑147 (MQ=255) tgggtgtgGTAATGGGTTGTTTCCCAATGCGTTTTCGCGCCTGCGCGGGCCTCTTCG‑GGGGTAAACCG‑GCTCCTACCGGCGGGGACGGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGTTTTACCGGCGAAGTGGCCGGCACAGGCAGAAGCATAAc < 2:821105/146‑1 (MQ=255) tcGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCGCGTCG‑CGGGTTAATCC‑GCGCCTACAGGCGCGGACCGGGCG‑CGGTCC‑‑‑CCCGGAGGGGCGGGTTTAACCCCGACGAGGCCGGCACAGGCAGAAGCATAAc > 1:679696/1‑150 (MQ=255) tgtgGGATTGGGTTGTTTCCCAACGCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTCCAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCaaa < 2:6264432/150‑1 (MQ=255) tgtgGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTcc‑‑‑ccc < 2:7523444/97‑1 (MQ=255) ggTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCCAAGCATTTTTTg > 2:3553702/1‑150 (MQ=255) tttCCCAAAGCGGGATAGCGCCTGCGCCGGCCGCTTCG‑CGGGTAAATAC‑GCTCCGACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGTTTAACCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTcgt > 2:2502400/1‑148 (MQ=39) cccAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTaa < 2:7191857/150‑1 (MQ=255) ccaccgCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAAc < 2:8813781/145‑1 (MQ=255) cAATGCGTTATCGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACCGGCGCGGCCCGTGCG‑CGGTCC‑‑‑CCCGTAGTAGCGGTTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAAcc < 1:7115496/150‑1 (MQ=38) cAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAAcc < 2:610954/150‑1 (MQ=255) gCGTGATCGCGCCTGCGCCGGCCTCTTCG‑CGGTTAACTCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGTGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGta < 1:7283936/150‑1 (MQ=255) gATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATaaa < 1:5098692/150‑1 (MQ=255) cgcCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTta < 2:8767819/150‑1 (MQ=255) cgggCCTCTTGG‑CGTTTAAATCC‑GCTCCTACCGGCGGGGCCGGTGGG‑GGGTCC‑‑‑CCGTTCGTTGGGGTTTTACCCGCTAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTtata < 1:4075253/148‑1 (MQ=255) CCGGCCTCTTCG‑CGGTTAAATCC‑GCTCCTACCGGCGCGGACGGGGCG‑CGGTCC‑‑‑CCCGTTGGAGCGGTTTAACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTtata > 1:1930115‑M1/1‑150 (MQ=255) gCCTGTTCG‑‑GGGTTAATCCGGCTCGTACTGGGGCGGCCGGGGGG‑GGGGCC‑‑‑CCGGTGGGAGGGGGTTTCCCCGCGACGTGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTc < 1:4038362/150‑1 (MQ=255) CTTCG‑CGGTTAAATCC‑GCTCCTACCGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGTTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTg > 2:3202245‑M1/1‑150 (MQ=255) cgGGTAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGtttacccgcgaagaggccggcacaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtc < 1:2875762‑M2/150‑96 (MQ=255) cgGGTAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGtttacccgcgaagaggccggcacaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtc < 1:7317939‑M2/150‑96 (MQ=255) ggttAAATCC‑GCTCCACCCGGCGCGGACGGGGCG‑GGGCCC‑‑‑CCGGTCGGTGCGGGTTAACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATc < 1:3078866/147‑1 (MQ=255) ggttAAACCC‑GCTCCTACTGGCGCGGACCGGGGG‑CGGTCC‑‑‑CCGGTTGGTGGGGTTTTACCCGCTAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATc < 1:3267321/147‑1 (MQ=255) GGGTAAACCC‑GCTCCTACGGG‑‑‑GGACCGCGCA‑CGGTCCGCGCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGgcaaac < 2:1849292‑M1/150‑3 (MQ=255) GGGTAAACCC‑GCTCCTACGGG‑‑‑GGACCGCGCA‑CGGTCCGCGCCTGTAGGAGCGGATTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATc < 2:4040386‑M1/150‑1 (MQ=255) GGTAAACCC‑GCTCCTACGGG‑‑‑GGACCGCGCA‑CGGTCCGCGCCTGTAGGAGCGGATTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCt < 2:7726304‑M1/150‑1 (MQ=255) tAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgggggtcttct < 1:5632962‑M2/150‑100 (MQ=255) tCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtg < 1:7474293‑M2/150‑104 (MQ=255) tCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGtttacccgcgaagaggccggcacaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtg < 2:1670324‑M2/150‑104 (MQ=255) tCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCa > 2:6709620/1‑150 (MQ=255) tCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCa > 2:4466239/1‑150 (MQ=255) tCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCa > 1:2615299/1‑150 (MQ=255) gCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggca < 2:5699117‑M2/150‑107 (MQ=255) gCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggca < 2:1279141‑M2/150‑107 (MQ=255) tCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGtttacccgcgaagaggccggcacaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcagg < 1:5147381‑M2/150‑109 (MQ=255) tCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACAcc > 1:4592062/1‑150 (MQ=255) tCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACAcc > 1:1809737/1‑150 (MQ=255) tCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACAcc > 1:6371855/1‑150 (MQ=255) tCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGAtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcagg < 2:506588‑M2/150‑109 (MQ=255) tCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGAtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcagg < 2:6559363‑M2/150‑109 (MQ=255) cTACCGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCt < 2:2312005/150‑1 (MQ=255) cTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgcccccggctcgtgggtcttcttgtggcaggtc < 1:4470574‑M2/150‑111 (MQ=255) cTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTGTAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCt > 1:8039628/1‑150 (MQ=255) cTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCt > 2:7480520/1‑150 (MQ=255) tACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGtttacccgcgaagaggccggcacaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcaggtcg < 1:6118768‑M2/150‑112 (MQ=255) tACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGAtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcaggtcg < 1:6417481‑M2/150‑112 (MQ=255) aGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTtata < 1:556/119‑1 (MQ=255) aGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCCGCCCCAACACCCTTCaa > 2:7647624/1‑150 (MQ=255) ggCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAg > 2:2780627/1‑150 (MQ=255) gcgcGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGa > 1:8347128/1‑150 (MQ=255) gcgcGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTCTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGa > 1:4330519/1‑150 (MQ=255) gcgcGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGAtttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgccgccccctgctcgtgggtcttcttgtggcaggtcgggcaa < 1:1286818‑M2/150‑117 (MQ=255) gcgGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAAc < 1:8684131/150‑1 (MQ=255) ggACCGGGCG‑CGGTCC‑‑‑CCGGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACaa < 1:3456259/150‑1 (MQ=255) ggACCGCGCA‑CGGTCC‑‑‑GCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACaa > 2:3402537/1‑150 (MQ=255) ccGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCTCAACACCCTTCAAGAACAAGGa < 1:4866206/150‑1 (MQ=255) ccGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGa < 2:685912/150‑1 (MQ=255) cGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGAc < 2:4224353/150‑1 (MQ=255) cGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGAc > 1:8756833/1‑150 (MQ=255) g‑cgGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAAc < 1:2387455/150‑1 (MQ=255) g‑cgGTCC‑‑‑CCCGTAGAAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAAc > 2:434883/1‑150 (MQ=255) | AGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCG‑CGGGTAAATCC‑GCTCCTACAGGCGCGGACCGTGCG‑CGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAAC > NC_002947/4901270‑4901568 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |