| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,965,961 | G→C | 9.9% | intergenic (‑149/+115) | fliE ← / ← atoC | flagellar hook‑basal body complex protein FliE/two‑component system DNA‑binding transcriptional activator AtoC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,965,961 | 0 | G | C | 9.9% | 900.2 / 57.2 | 305 | intergenic (‑149/+115) | fliE/atoC | flagellar hook‑basal body complex protein FliE/two‑component system DNA‑binding transcriptional activator AtoC |
| Reads supporting (aligned to +/- strand): ref base G (106/167); new base C (20/11); total (127/178) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.10e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 313 total aligned reads displayed.
GACCCTTCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGCCTCGACGTCAAACCCGG > NC_002947/4965813‑4966110 | aCCCTTCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCagag < 1:8611670/150‑1 (MQ=255) ccTTCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCg > 2:3511019/1‑150 (MQ=255) cTTCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCATGCGTCGCCATATGGCCGCAGAGCgg > 1:6675914/1‑150 (MQ=255) tctctcCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGGCGTGCGTCGCGGGAGGGGCGCCGAGCGGcccc > 1:4626032/1‑150 (MQ=255) tctcCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCGTGCGTCGCGATAGGGGCGCCGAGCGGcccccg > 1:1884234/1‑148 (MQ=255) tctcCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCGTGCGGCGCGAGAGGGCCGCCGAGCGGCCCCgg > 1:569906/1‑150 (MQ=255) ctcCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCTCTGCGGccctatc < 1:3936612/150‑5 (MQ=255) ctcCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCTCTGCGGccctatc < 1:3610643/150‑5 (MQ=255) tcCTGCGGCCGCATTTTTTTGACAGTCAGGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCTCTGCGGccctatcg < 1:300269/150‑6 (MQ=255) gCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCt < 1:1105731/150‑1 (MQ=255) cGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCtt < 1:5594020/150‑1 (MQ=255) gCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGGCGTGCGGCGCGATTGGGCCCCAGAGCGGCCCCCCCGATCGTTg > 1:1072639/1‑150 (MQ=255) ccGCATTTTTTTGACCGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTgc < 2:1624000/150‑1 (MQ=255) ccGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTgc < 2:1055107/150‑1 (MQ=255) gCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTgcgg > 1:7162191/1‑150 (MQ=255) gCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTgcgg < 1:507520/150‑1 (MQ=255) gCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTgcgg < 1:452454/150‑1 (MQ=255) aTTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTgcggcg < 2:8696209/150‑1 (MQ=255) aTTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTgcggcg > 1:8027610/1‑150 (MQ=255) ttttttGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCGTTTCGGCGGa > 2:4559280/1‑150 (MQ=255) ttGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGGCGGGGGGGGCCCGTGGGGCGCAGAGCGGCCCCGGCGCTCGTTGGGGGGGCGCTg > 1:341786/1‑150 (MQ=255) ttGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTg < 1:911478/150‑1 (MQ=255) aTGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTgg < 2:8027610/150‑1 (MQ=255) aTGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTgg < 2:3601455/150‑1 (MQ=255) tGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTggg < 2:2304728/150‑1 (MQ=255) tGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGCCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTggg < 2:5461128/150‑1 (MQ=255) gcggcgAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCCGCGATCATTGCGGCGGAGCTGAAGACCTgggg > 2:6762882/1‑150 (MQ=255) cggcgAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGc < 1:4176828/150‑1 (MQ=255) cggcgAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGc < 1:2853191/150‑1 (MQ=255) ggcgAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGcc > 2:5723883/1‑150 (MQ=255) gcgAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCCTGGGGCGCCGGAGGGCCCCGAAGCGGCCCCCGCGATGGGTTGGGCGGGGGAGAAGACCTGGGGGCg > 1:266297/1‑150 (MQ=255) gAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGGCGTTCGTCCGGAATGGGCCCCCCCGCGGCCCCCGCCCGCATTGGGGCGGGGCGGGAGACCACGGGgcgcc > 1:1670227/1‑149 (MQ=255) ctacctaAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCGTGCGTGGCGATATGGCCGCAGAGCGGCCCCCGCGAACTTTGCGGCGGAGCTGAAGACCTGGGGGCGCGTCGCGcc > 2:2265287/1‑150 (MQ=255) tacctaAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGccc < 1:4102374/150‑1 (MQ=255) ctaAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGGCGTGGGGCGCGGTAGGGCCGCCCAGCCGCCCCCCCCCGCTTTTGGGCGGGGCGGGAGACCAGGGGGGGCGGCGCGccccca > 1:3175090/1‑148 (MQ=255) ctaAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGGCGTGCGGCGCGCTAGGGGCGCCCGGCGGCCCCCGCGGTCGTTGGGGCGGAGGTGGAGAACAGGGGGCGCCTCGCGcccccg > 1:8364538/1‑148 (MQ=255) aaaGCAACACAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTc < 1:5280230/150‑1 (MQ=255) aaaGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTc < 2:797757/150‑1 (MQ=255) aaGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCATGCGTCGCGATAGGGGCGCAGAGCGGCCCCCGCGAACGTTGCGGCGGGGCTGAAGACCAGGGGCCGCGTCGcccccccaacg > 1:1341467/1‑145 (MQ=255) caacaaAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGa < 1:6842016/150‑1 (MQ=255) caacaaAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGa < 2:418899/150‑1 (MQ=255) caacaaAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCCGCGATCTTTGCGGCGGGGCTGAAGAACTGGGGCCCCGGCGCGCCCCAGGcgcgc > 2:2537544/1‑149 (MQ=38) caGGTGCCAGCCTTCGCAACTCATGTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCGTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTGGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACaa < 2:7000261/149‑1 (MQ=255) aaGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACaa < 1:4875183/150‑1 (MQ=255) aGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAg < 2:1225185/150‑1 (MQ=255) ggTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCTCTGCGGccc > 2:2103383/1‑87 (MQ=38) tGCCAGCCTTCGCAACTCCTTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGcc < 2:1511623/150‑1 (MQ=255) ggCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGcc < 2:5935790/149‑1 (MQ=255) aGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGCTAGGGCCGCAGAGCGGCCCCCGCGATCTTTGCGGCGGAGCGGGAGACCAGGGGCCGCGTCGCGCCCCAGTCGCGACACAAGGCCGTTc > 2:473202/1‑150 (MQ=39) gCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTcc < 2:3316089/150‑1 (MQ=255) cGCATCTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACag < 1:5892302/150‑1 (MQ=255) cGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACag < 1:3292351/150‑1 (MQ=255) gCAACTCATGTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACaga < 2:8339297/150‑1 (MQ=255) aaCTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCGTGCGTCGCGATATGGCCGCCGAGCGGCCCCCGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCGTCGCGCCCCCATCGCGACACAAGGCCCTTCCCACAGAgg > 2:7699751/1‑150 (MQ=255) cTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTc < 2:3017971/150‑1 (MQ=255) tCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTcc < 2:3961988/150‑1 (MQ=255) cATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCcg < 2:634139/150‑1 (MQ=255) aTTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCcgc < 2:7162191/150‑1 (MQ=255) aTTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCcgc < 2:2839047/150‑1 (MQ=255) aTTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCAATCGCGACACAAGGCCGTTCCCACAGAGGTCcgc > 2:8755532/1‑150 (MQ=255) ttCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCgcgc < 1:4300984/150‑1 (MQ=255) cccAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCa < 2:426186/150‑1 (MQ=255) ccAGAGATCACACAATTCCTGCGGGAGCGGCCGTGCGTCGCGATAGGGCCGCAGAGCCGCCCCCGCGAGCGTTGCGGCGGCGCTGGAGACCGGGGGCCGCGTCGCGCCCCCGTCGCGCCACAACGCCGGTCCCACAGAGGGCCGCGcccg > 2:1884195/1‑148 (MQ=255) agagATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGtt < 2:1171667/150‑1 (MQ=255) cacacaATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAgat < 2:1738115/150‑1 (MQ=255) acacaATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAgatg > 2:2809740/1‑150 (MQ=255) acacaATTCCTGCGGGAGCGGCCGTGCGTCGCGGTAGGGCCGCAGAGCGGCCCCCGCGCTCTTTGCGGCGGGGCTGCAGTCCAGGGGGCGCTTCGCGCCCCAGTCGGGCCCCAACGCCGGGCCCACCCCGGGGCGCGCCCCTTGCAgatg > 2:5176016/1‑150 (MQ=255) acaATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCGGCGCGCCCCAGTCGCCACACAAGGCCGTTCCCACACAGGTCCGCCCCAGTTTCAcatgat > 2:7086146/1‑150 (MQ=37) ttCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGc < 2:3284923/150‑1 (MQ=255) ccTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCa < 2:2061418/150‑1 (MQ=255) tGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGt < 2:3678571/150‑1 (MQ=255) cGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCa < 1:100368/150‑1 (MQ=255) ggAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGc < 2:6672177/150‑1 (MQ=255) ggAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGc < 2:318744/150‑1 (MQ=255) gAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGcc > 2:5408811/1‑150 (MQ=255) gAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAACGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGcc > 1:6982434/1‑150 (MQ=255) gCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACa > 1:5051355/1‑150 (MQ=255) gCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACa < 1:6483505/150‑1 (MQ=255) gCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACa < 1:788878/150‑1 (MQ=255) cTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAgg > 2:4378233/1‑150 (MQ=255) cTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAgg > 2:5599710/1‑150 (MQ=255) gCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTg < 1:7351045/150‑1 (MQ=255) gCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTg < 1:2358315/150‑1 (MQ=255) gCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTg < 1:754783/150‑1 (MQ=255) tCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGcc > 1:6174146/1‑150 (MQ=255) gcgATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGCCTc < 1:1939156/150‑1 (MQ=255) gcgATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGCCTc < 2:3423928/150‑1 (MQ=255) gATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGCCTCGa > 2:4976893/1‑150 (MQ=255) gATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGCCTCGa > 2:3891370/1‑150 (MQ=255) ccggggCCGCTCTGCGGCCCTGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGCCTCGAc > 2:8473720/4‑150 (MQ=39) ccggggCCGCTCTGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTg < 2:1417452/139‑1 (MQ=255) cggggCCGCTCTGCGGCCCTGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGCCTCGACg > 1:6403552/3‑150 (MQ=255) cggggCCGCTCTGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGCCTCGAc > 1:4582827/3‑149 (MQ=255) cggggCCGCTCTGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGCCTCGAc < 2:4582743/147‑1 (MQ=255) gggCCGCTCTGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGCCTCGACGTc > 1:2644485/1‑150 (MQ=255) gggCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGCCTCGACGTc < 1:1174109/150‑1 (MQ=255) cGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGCCTCGACGTCAAAc < 2:953641/150‑1 (MQ=255) cGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGCCTCGACGTCAAAc < 2:6916765/150‑1 (MQ=255) cAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGCCTCGACGTCAAAccc > 2:4077907/1‑150 (MQ=255) agagCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGCCTCGACGTCAAACCCg > 2:1088803/1‑150 (MQ=255) | GACCCTTCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGCCTCGACGTCAAACCCGG > NC_002947/4965813‑4966110 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |