| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,197,756 | T→G | 13.8% | intergenic (+140/‑62) | PP_4572 → / → PP_4573 | hypothetical protein/AAA family ATPase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,197,756 | 0 | T | G | 13.8% | 539.7 / 15.8 | 218 | intergenic (+140/‑62) | PP_4572/PP_4573 | hypothetical protein/AAA family ATPase |
| Reads supporting (aligned to +/- strand): ref base T (76/100); new base G (32/3); total (115/103) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.51e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 235 total aligned reads displayed.
GTCTGACTGAGACAGCGTGACGGGGCATTCAGGGACTGAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAGATGACCTGAAACTGGCGGTAAACGCGGCCATTACCCTCGAACGCCCGCTGT > NC_002947/5197607‑5197905 | tCTGACTGAGACAGCGTGACGGGGCATTCAGGGACTGAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCtt > 1:4597001/1‑150 (MQ=255) tgactgaGACAGCGTGACGGGGCATTCAGGGACTGAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCttat < 1:5480919/150‑1 (MQ=255) gactgaGACAGCGTGACGGGGCATTCAGGGACTGAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCttatt < 1:6797687/150‑1 (MQ=255) actgaGACAGCGTGACGGGGCATTCAGGGACTGAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCttatta < 2:4798890/150‑1 (MQ=255) actgaGACAGCGTGACGGGGCATTCAGGGACTGAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCttatta < 2:6773887/150‑1 (MQ=255) actgaGACAGCGTGACGGGGCATTCAGGGACTGAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCttatta > 1:8776301/1‑150 (MQ=255) tgaGACAGCGTGACGGGGCATTCAGGGACTGAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAgg > 2:1834980/1‑150 (MQ=255) gagaCAGCGTGACGGGGCATTCAGGGACTGAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGgc < 1:6512563/150‑1 (MQ=255) agaCAGCGTGACGGGGCATTCAGGGACTGAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCGGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTCCCACCGTAGGAGgcg > 2:1718391/1‑150 (MQ=255) gaCAGCGTGACGGGGCATTCAGGGACTGAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGgcgc < 1:5783640/150‑1 (MQ=255) aCAGCGTGACGGGGCATTCAGGGACTGAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGcgcg < 2:5703413/150‑1 (MQ=255) cAGCGTGTCGGGGCATTCAGGGACTGAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCgg < 1:4456193/150‑1 (MQ=255) cAGCGTGACGGGGCATTCAGGGACTGAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCgg < 1:2291475/150‑1 (MQ=255) cAGCGTGACGGGGCATTCAGGGACTGAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCgg < 2:739373/150‑1 (MQ=255) cGTGACGGGGCATTCAGGGACTGAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGtt < 1:7244360/150‑1 (MQ=255) tGACGGGGCATTCAGGGACTGAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGTTTa < 2:1639227/150‑1 (MQ=255) gACGGGGCATTCAGGGACTGAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCGCCTAATAAGGTTGTAGGGGCGGGTTTAc < 1:5012930/150‑1 (MQ=37) gACGGGGCATTCAGGGACTGAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGTTTAc < 2:5509810/150‑1 (MQ=255) gACGGGGCATTCAGGGACTGAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTGCGGGCCTCTTCGC‑GGGTAAACCCGCGCCTAATAAGGTTGTAGGGGCGGGTTTAc < 1:8705290/150‑1 (MQ=25) ggggCATTCAGGGACTGAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCGGATTAGGCGCGGGTTTACCcg > 1:5694173/1‑150 (MQ=255) gggCATTCAGGGACTGAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCcgc < 1:8127398/150‑1 (MQ=255) gggCATTCAGGGACTGAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCcgc < 2:8099175/150‑1 (MQ=255) gCATTCAGGGACTGAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGa < 1:3158677/150‑1 (MQ=255) cATTCAGGGACTGAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGaa < 2:2921473/150‑1 (MQ=255) aTTCAGGGACTGAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGGAAACCCCCCCCCACAACCCTATTAGGCGCGGGGTTACCCCCGaac > 1:1176526/1‑149 (MQ=255) ttCAGGGACTGAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTC‑‑CGC‑GGGTAAACCCGCCCCTACAACCGTATTAGGCGCGGGTTTACCCGCGAAGAgg > 2:2325584/1‑150 (MQ=255) tCAGGGACTGAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCGTCGC‑GGGTAACCCCGCCCCTACAACCTGCTTAGGCGCGGGTTTACCCGCGAagag < 2:7074758/150‑1 (MQ=255) aGGGACTGAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCGACCACCGGATTAGGCGCGGGGTTTGCCGCGCAGAGGc > 1:5886197/1‑150 (MQ=255) aGGGACTGAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAAACCGCCCCTACCACCCTAGTAGGCGCGGGTTTACCCGCGGAGAGGc > 1:6186158/1‑150 (MQ=39) aGGGACTGAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGGCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGc < 2:3767764/150‑1 (MQ=255) tGAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCGACAACCGTATTAGGCGCGGGGTTACCCGCGAAGAGGCCCGcca > 1:3407907/1‑148 (MQ=255) tGAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCCCCCCGACAACCTTATTAGGCGCGGGTTTACCCCCGAAGAGGCCCGCaa > 1:3362004/1‑150 (MQ=255) gAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATCGTCGGAAACAAATCCAGTTCATGTGCGGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTCGGCGCGGGTTTACCCGCGAAGAGGCCCGCaaa < 1:2034920/150‑1 (MQ=255) gAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGCGGGGTAAACCC‑CCCCCACCACCGTATTAGGCGCGGGTTTTCCCGCCAAGAGGCCCCCaaa > 1:3006846/1‑150 (MQ=255) cGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTaa < 2:3434074/150‑1 (MQ=255) tCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACa < 2:6595687/150‑1 (MQ=255) tGCGTTTGCAGCCGCCAGGCCCCGCGTTTTAGTCGGAAAAAAATCCAGATCATGTGCTGCCTGTTGGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACACCCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACaga < 2:1677068/150‑1 (MQ=255) tGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTCGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACaga < 1:8638697/150‑1 (MQ=255) tGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACaga < 2:6994972/150‑1 (MQ=255) tGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACaga < 2:3857495/150‑1 (MQ=255) gCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGTTAAACCCGCCCCTACAACCTTCTTAGGCGCGGTTTTACCCGCGAAGAGGCCCGCAAAGCCCTAACCagag < 2:3044132/150‑1 (MQ=255) cGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTCGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAgg < 2:2681274/150‑1 (MQ=255) cAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAAc > 2:3062944/1‑150 (MQ=255) aGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGGAAACCCGCCCCGACAACCGGATTAGGCGCGGGGTTACCCGCGAAGAGGCCCGCAAAGCCCAAAACAGAGGCCAAAcc > 1:1657080/1‑150 (MQ=255) gccAGGCCCCGCGTTATAGTCGGAAACAAATCCGGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCa < 2:8660388/150‑1 (MQ=255) aGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAATCCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGa > 2:5813050/1‑150 (MQ=255) gCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCCCCCCGACAACCAGAATAGGCGCGGGTTTTCCCGCGAAGAGGCCCGCAAAGCCCAAAACAGAGGACAAACCCCCAAGaaa > 1:4091592/1‑149 (MQ=255) cttttttgTCGTAAACAAATCCAGATCTTGGGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAACCCCGCCCCAACAACCTTATTCGGGGGGGTTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGaa < 1:6313712/143‑1 (MQ=255) ctttATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGaa < 2:8502194/148‑1 (MQ=255) cgTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGaa < 2:4273818/150‑1 (MQ=255) cgTTATAGTCGGAAACAAACCCACATCATGTGCTGCCTGTTCGGCCATATACGC‑GGGTAAACCCCCCCCAAAAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGaa < 2:17940/150‑1 (MQ=255) gTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAg < 2:4212652/150‑1 (MQ=255) taGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCAc > 2:7278806/1‑150 (MQ=255) tCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGGCAAACCCCCATGAAGGTCGAAGGCACCcg > 1:2485479/1‑150 (MQ=255) ggAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAAACCGCCCCGACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAAACCCCATGAAGTTAGAAGGCACCcccg > 2:2467486/1‑150 (MQ=39) gAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGa > 1:3552940/1‑150 (MQ=255) aaaCAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGAc < 1:6552832/150‑1 (MQ=255) tCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTTAACCCCCCCCTACAACCGTATTGGGCGCGGGTTTAACCGCGAAGAGGCCCGCCAAGCCCTAAACAGAGGACAAACCCCCAAGAAGTTCGAAGGCACCCCCGACGACCTcc > 1:8432969/1‑149 (MQ=255) tCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCGTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACAACGTCg > 1:7306526/1‑150 (MQ=255) cAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGcc < 2:3552940/150‑1 (MQ=255) aGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCca > 2:702385/1‑150 (MQ=255) tcttgtgCTGCCTGTTCGGGCCTCTGCGG‑GGTTAAACCCGCCCCCACAACCTTATTCGGCGGGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAg < 1:3247841/147‑1 (MQ=255) ctgcCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTCGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAGATGACCt < 2:506976/150‑1 (MQ=255) ctgcCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCCAAGCCCGAAACAGCGGACAAACCCCCCTGAAGTTCGAAGGCACCCGCGACTACGTCGCCCCAGATGACCt > 2:6020304/1‑150 (MQ=38) ctgcCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAGATGACCt < 2:4597001/150‑1 (MQ=255) ctgcCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCGTATTTGGCGCGGGGTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAAACCCCCTGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAGATGACCt > 2:2656386/1‑150 (MQ=39) ccTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCAACAACCATATAACGCGCGGGTTTAAACCCGCAAAGGCCCGCAAAGCCCAAAACAGAGGACAAACCCCCAAGAAGTTACAAGGCACCCCCGACTACGTCGCCAAAGATGACCTgca > 2:1190823/1‑148 (MQ=255) tGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGCAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAGATGACCTGAAAc > 2:7593351/1‑150 (MQ=255) tGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAGATGACCTGAAAc > 2:7909510/1‑150 (MQ=255) tCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAGATGACCTGAAACTgg < 2:4931839/150‑1 (MQ=255) gggCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAGATGACCTGAAACTGGCg < 2:4828282/150‑1 (MQ=255) gggCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAGATGACCTGAAACTGGCg < 2:8451652/150‑1 (MQ=255) gCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAGATGACCTGAAACTGGCGGt > 2:6171315/1‑150 (MQ=255) gCCTATTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAAAAGAGGACAAAACCCCATGAAGTTAGAAGGCACCCGCGACTACGTCGCCACAGATGACCTGAAACTGGCGGt > 1:396632/1‑150 (MQ=255) ctTCGC‑GGGTAAACCCGCCCCTCCAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAGATGACCTGAAACTGGCGGTAAAc < 2:1351331/150‑1 (MQ=255) ttCGC‑GGGTAAACCCGCGCCTAATAAGGTTGTAGGGGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAGATGACCTGAAACTGGCGGTAAAcg > 2:1913769/1‑150 (MQ=25) ttCGC‑GGGTAAACCCGCCCCTACAACCGTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCCCCCGCGACTACGTCGCCACAGATGACCTGAAACTGGCGGTAAAcg > 1:5635458/1‑150 (MQ=255) gcgc‑gGGTACCCCCGCCCCTACAACCTTATTCGGCGCGGGTTTCCCCGCGAAGAGGCCCGCAAAGCCCTCAACAGAGGACAACCCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAGATGACCTGAAACTGGCGGTAAAcgc < 2:1176526/149‑1 (MQ=255) gc‑gGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGc > 1:7162907/1‑118 (MQ=255) aaaCCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAGATGACCTGAAACTGGCGGTAAACGCGGCCATTa > 2:540907/1‑150 (MQ=255) aaCCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAGATGACCTGAAACTGGCGGTAAACGCGGCCATTAc > 1:4171903/1‑150 (MQ=255) ccGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAGATGACCTGAAACTGGCGGTAAACGCGGCCATTACCCt > 1:1293791/1‑150 (MQ=255) ccGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAGATGACCTGAAACTGGCGGTAAACGCGGCCATTACCCt > 1:2245653/1‑150 (MQ=255) ccGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAGATGACCTGAAACTGGCGGTAAACGCGGCCATTACCCt > 1:7446216/1‑150 (MQ=255) ccGCCCCTACAACCTTATTAGGCGCGGGTGTACCCGCTAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCAACAGATGACATGAAACTGGCGGTAAACGCGGCCATTACCCt > 1:477825/1‑150 (MQ=255) cGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAGATGACCTGAAACTGGCGGTAAACGCGGCCATTACCCTc > 1:7761884/1‑150 (MQ=255) cccTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAGATGACCTGAAACTGGCGGTAAACGCGGCCATTACCCTCGaa > 1:3650595/1‑150 (MQ=255) cccTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAGATGACCTGAAACTGGCGGTAAACGCGGCCATTACCCTCGaa > 1:7622467/1‑150 (MQ=255) aCAACCTTATTCGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAGATGACCTGAAACTGGCGGTAAACGCGGCCATTACCCTCGAACGcc < 2:7356439/150‑1 (MQ=255) aaCCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAGATGACCTGAAACTGGCGGTAAACGCGGCCATTACCCTCGAACGCCCg > 1:2150503/1‑150 (MQ=255) aaCCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAGATGACCTGAAACTGGCGGTAAACGCGGCCATTACCCTCGAACGCCCg > 2:4456297/1‑150 (MQ=255) aaCCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAGATGACCTGAAACTGGCGGTAAACGCGGCCATTACCCTCGAACGCCCg > 1:6559258/1‑150 (MQ=255) aaCCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAGATGACCTGAAACTGGCGGTAAACGCGGCCATTACCCTCGAACGCCCg > 2:8289663/1‑150 (MQ=255) ccTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAGATGACCTGAAACTGGCGGTAAACGCGGCCATTACCCTCGAACGCCCGCt > 1:4870624/1‑150 (MQ=255) cTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAGATGACCTGAAACTGGCGGTAAACGCGGCCATTACCCTCGAACGCCCGCTg > 2:644271/1‑150 (MQ=255) cTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAGATGACCTGAAACTGGCGGTAAACGCGGCCATTACCCTCGAACGCCCGCTg > 2:2625145/1‑150 (MQ=255) ttattaGGCGCGGTTTTACCCGCGAAGAGGCCCGCTAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAGATGACCTGAAACTGGCGGTAAACGCGGCCATTACCCTCGAACGCCCGCTGt < 2:59237/150‑1 (MQ=255) ttattaGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAGATGACCTGAAACTGGCGGTAAACGCGGCCATTACCCTCGAACGCCCGCTGt > 1:6386383/1‑150 (MQ=255) ttattaGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAGATGACCTGAAACTGGCGGTAAACGCGGCCATTACCCTCGAACGCCCGCTGt > 2:62030/1‑150 (MQ=255) ttattaGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAGATGACCTGAAACTGGCGGTAAACGCGGCCATTACCCTCGAACGCCCGCTGt > 2:8778475/1‑150 (MQ=255) | GTCTGACTGAGACAGCGTGACGGGGCATTCAGGGACTGAATACCCGGTCTGCGTTTGCAGCCGCCAGGCCCCGCGTTATAGTCGGAAACAAATCCAGATCATGTGCTGCCTGTTCGGGCCTCTTCGC‑GGGTAAACCCGCCCCTACAACCTTATTAGGCGCGGGTTTACCCGCGAAGAGGCCCGCAAAGCCCTAAACAGAGGACAAACCCCCATGAAGTTCGAAGGCACCCGCGACTACGTCGCCACAGATGACCTGAAACTGGCGGTAAACGCGGCCATTACCCTCGAACGCCCGCTGT > NC_002947/5197607‑5197905 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |