| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,645,266 | T→A | 9.4% | intergenic (+38/‑72) | PP_4950 → / → PP_4951 | hypothetical protein/EmrB/QacA family drug resistance transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,645,266 | 0 | T | A | 9.4% | 294.5 / 2.8 | 111 | intergenic (+38/‑72) | PP_4950/PP_4951 | hypothetical protein/EmrB/QacA family drug resistance transporter |
| Reads supporting (aligned to +/- strand): ref base T (39/51); new base A (10/2); total (57/54) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.26e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 116 total aligned reads displayed.
CTGACCCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAG > NC_002947/5645118‑5645415 | cTGACCCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTa > 2:7196469/1‑150 (MQ=255) aCCCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑Caa < 1:1762174/150‑1 (MQ=255) aCCCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑Caa < 2:3250508/150‑1 (MQ=255) aCCCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑Caa < 1:3898319/150‑1 (MQ=255) aCCCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑Caa < 2:1763988/150‑1 (MQ=255) aCCCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑Caa < 2:2197138/150‑1 (MQ=255) aCCCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑Caa < 1:6339874/150‑1 (MQ=255) aCCCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCATTCGCGGCTAAAGCCGCGCCGA‑Caa > 2:5425902/1‑150 (MQ=255) cccAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAAg < 1:7485260/150‑1 (MQ=255) ccAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAATCCGCTCCAA‑AAAgg > 2:8402381/1‑150 (MQ=255) ccAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCGTTCGCGGCGAAAGCCCCGCCGG‑CAAgg > 1:1410230/1‑150 (MQ=255) ggAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAAGGAAc < 2:5012171/150‑1 (MQ=255) ggAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCAAAAGCCCCTACAA‑CAAGGAAc > 2:5195919/1‑150 (MQ=255) aGCGCGAGATGATCTTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAAGGAAcgc < 1:7306698/150‑1 (MQ=255) aGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAAGGAAcgc < 2:3390846/150‑1 (MQ=255) aGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAAGGAAcgc < 1:211829/150‑1 (MQ=255) aGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAAGGAAcgc < 2:3837414/150‑1 (MQ=255) cgcgAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAAGGAACGCGt < 1:6217419/150‑1 (MQ=255) gagaTGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAATCCGCAACAA‑CAAGGTAAGCGTTAc > 2:8424330/1‑150 (MQ=255) agaTGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAAGGAACGCGTAAcc < 1:5031919/150‑1 (MQ=255) gatgatCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAAGGAACGCGTAAccc < 2:1377997/150‑1 (MQ=255) tgatCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAAGGAACGCGTAACCCCt < 2:1492619/150‑1 (MQ=255) tgatCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAAGGAACGCGTAACCCCt < 1:6443403/150‑1 (MQ=255) gatCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAAGGAACGCGTAACCCCTg < 2:4978952/150‑1 (MQ=255) gatCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAAGGAACGCGTAACCCCTg < 2:5090309/150‑1 (MQ=255) atCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAAGGAACGCGTAACCCCTGt < 1:108679/150‑1 (MQ=255) tCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAAGGAACGCGTAACCCCTGTa < 1:5482121/150‑1 (MQ=255) ccTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAAGGAACGCGTAACCCCTGTAg < 1:8465516/150‑1 (MQ=255) cTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAAGGAACGCGTAACCCCTGTAgg < 1:1862012/150‑1 (MQ=255) cTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAAGGAACGCGTAACCCCTGTAgg < 1:3797183/150‑1 (MQ=255) cTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAAGGAACGCGTAACCCCTGTAgg < 2:2263506/150‑1 (MQ=255) tGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGTACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAAGGAACGCGTAACCCCTGTAGGa < 1:5405382/150‑1 (MQ=255) tGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGTACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAAGGAACGCGTAACCCCTGTAGGa < 1:5405364/150‑1 (MQ=255) aCCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAATCCGCTCCTA‑CAAGGAACCCGTAAACCCGGGGGGAGCggg > 2:3330780/1‑149 (MQ=255) aCCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGc < 2:7251197/150‑1 (MQ=255) aCCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGc < 1:6234710/150‑1 (MQ=255) aCCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGc < 1:6080239/150‑1 (MQ=255) aCCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGc < 1:1366245/150‑1 (MQ=255) aCCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGc < 1:5829085/150‑1 (MQ=255) gTACTTATGAACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCGAAAGCCCCGCCGA‑CGAGGAACGCCTAAACCCGGGTGGAGCggggtta > 2:483049/1‑145 (MQ=255) gTACTTATGAACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTAGCGGCTAAAGCCCCTACAA‑CAAGGAAAGCGTAACCCCGGGAGGAGCGGCGTTa > 2:482877/1‑150 (MQ=255) aCTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGc < 1:1829773/150‑1 (MQ=255) tATGGACAGCGCAGTACCGGGTCGCGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCGGACATTGTGACTGGACTGGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAAGGAACGCGTACCCCCTGTAGGAGCGGCTTTAGCcgc < 2:5557869/150‑1 (MQ=255) gACAGCGCAGTACCGGGTCGTGTCATTTGCCCGGGGCACTGGTAAAAGGCCTGACCCTGACATTGTTACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CACGGAACGCGTAACCCCTTTAGGAGCGGCTTTAGCCGCGaaa < 1:2820811/150‑1 (MQ=39) aCAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCCAAAGCCCCGGCAA‑CAAGGCACGCCTAACCCCGGGAGGGGCGGCGTTAGCCGCGCAAg > 2:5244544/1‑150 (MQ=255) aGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCCGCGAAAGCCCCGCCGA‑CCAGGCACGCGGAACCCCGGGAGGCGCCGCGTTAGCCCCGAAAggg > 2:6369812/1‑150 (MQ=255) cgcAGTACCGGGTCGAGTCATGTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGTACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAAGCAACGCTTAACCCCTGTAGTAGCGGCTTTAGCCGCGAAAGGGcc < 2:2774201/150‑1 (MQ=39) gcAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCCCGCCAA‑CCACGAACCCCGAACCCCGGTGGGGGCGGCGGTAGCCCCGCAACGGccc > 2:5508795/1‑149 (MQ=255) tACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTGCTA‑CAAGGTACGCGTAACCCCTGTAGGATCGGGTTTTGCCGCGTAAGGGGCGGCAc > 2:6565181/1‑150 (MQ=38) cgTCTTTGGCCCGGGCCCCGGGTAAAAGCCCGGACCCTGACTTGGTGCCTGGACGGGCGGCCCCTTTCGCGGCAAACGCCGCTCCTA‑CCCGGACGGCGTAACCCCGGTCGGAGCGGGTTTAGCCGCGAAAGGGCCGGCACTGACAAACGa < 2:7897543/149‑1 (MQ=16) tttGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCGCCGA‑CAAGGCACCCGGAAACCCCGGAGGCGCGGCGTTATCCCCGCAATGGCCGGCCCCGGCAAACGCGGACg > 2:1243429/1‑150 (MQ=255) ttGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCGAAAGCCGCGCCGA‑CAAGGGACGCGTAACCCCGGGTGGGGCGGCGTTAGCCGCGCCAGGGGCCGCACTGACAAACGCgggccg > 2:7803814/1‑146 (MQ=255) ggCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCACCAA‑CACCGAACCCGTAACCCCGGTAGGAGCGGCGTTAGCCGCCGAACGGCCCGCACAGACAAACCACGACGTCATGCCCg > 2:6283136/1‑150 (MQ=255) gTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAATCCGCTCCTA‑CCATGTAAGCGTTACCCCGGTATGTGCGGCTTTATCCGCGAAAGGGCCCGCACAGGCAAACGAGGAACTCATGCCCCAACGccc > 2:5690391/1‑148 (MQ=255) gTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAAGGAACGCGTAACCCCGGTAGGAGCGGCTTTATCCGCGAAAGGGGACGCCCTGTCAAACCAGGACGTCATGCCCgcacgcac > 2:5690303/1‑150 (MQ=38) cAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAATCCCCGCCAA‑CAAGGGACGCGTAACCCCCGGAGGTGCGGCGTTTGCCGCCGAAGGGGCGGCACAGACAAAACAGGACGTCAAGCCCCAACGCAccc > 2:7055676/1‑150 (MQ=255) aaaGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAATCACCTCCAA‑CAAAGAAAGCCGAAAACCAGGGGGGGCGGCTTTATCCGCCAAAGGGCCCGCCCGGACAAAAGAAGACGTCAATCCCCAAcccccccc > 2:5352012/1‑150 (MQ=255) aaaGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCGTTCGCGGCGAAAGCCCCGCCGACCACGCCCCCCGAAACCCCGGT‑GGAGCGGCGGTAGCCGCGCACGGGCCGGCCCAGACAAACCAGCACCGCAAGCCCCCACCCAcccc > 2:3422658/1‑150 (MQ=255) gCCTTACCCTGACATTGTGACTGTAGTTGCGGGCCCTTTCGCGGCAAAACCCGCTCATA‑CACGTAAGGCGTAACCCCTTTTGGAGCGGATTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTg < 2:4223489/150‑1 (MQ=255) gCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCGAATGACCCGCCGA‑ACAGGGACGCCGAAACCCGGTTGGGGCGGCGTTAGCCGCGAAAGGGCCGGCACTGACAAACCCGGAAGTCATTCCCGAAAGCAccccccgg > 2:1304936/1‑146 (MQ=255) tgacATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAACGCAAGCGTAAACCCGGGTGGGGCGGCTTTATCCGCGAAAGGGCCGGGCCTGACCAACCAGGACGTCCTGCCCGTACGCACCCCGCTGGACCCCggc > 2:8569107/1‑148 (MQ=255) gacATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAATCCGCTCCTA‑CAAGGAACCCCTAAACCCGGTTGGAGCGGCGTTAGGCGCGCCAGGGCCCGCCCTGACAAACCAGGACGTCATTCCCCCACGCACCCCCCGGGGCCCCCTCa > 2:5638940/1‑150 (MQ=255) gcagttGCCGCCCCTTTCGCGGAAAAACCCGATACAA‑AAACCAACGCTAAACCCCTTTAGGCGCGGATTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGa < 2:4858252/146‑1 (MQ=255) agttGCGGCCCCTTCGGCGCATAAAGCCCCTCCTC‑CACGCAACGCTAAACCCCTGTTGGCGCGTTTTTACCCGCTAATGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATc < 2:2225172/148‑1 (MQ=255) cccGGCCCTTTCGCGGCAAAAGCCGCTCCTA‑CAAGGAACGCTTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCtt < 2:7955881/149‑1 (MQ=255) ccGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAAGGAACGCGTAACCCCTGTa > 1:2717707/1‑52 (MQ=255) ccGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAAGGAACGCGTAACCCCTGTa < 2:2717707/52‑1 (MQ=255) ccGCCCCTCGCGCGGCTAAAGCCGCTCCTC‑CACGCAACGCGTAACCCCGGTAGGAGCGGCTTTAGCCGCTAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTg < 2:5821524/150‑1 (MQ=255) gCCCTTTCGCGGCTAAAGCCGCTCCAA‑CAAGGAACCCGTAACCCCGGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGCCAAAAGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATACCGTGggt > 2:7880731/1‑150 (MQ=38) gcgGCTAAAGCCGCTCCTA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCa > 2:4346440/1‑150 (MQ=255) gcgGCTAAAGCCGCTCCTA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCa > 2:6371728/1‑150 (MQ=255) gcgGCTAAAGCCGCTCCTA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCa > 2:5718115/1‑150 (MQ=255) gcgGCTAAAGCCGCTCCTA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCGTGGGTGGTGGCCa > 2:507295/1‑150 (MQ=255) ggCTAAAGCCGCTCCTA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATc > 1:2506117/1‑150 (MQ=255) cTAACGCCGCCCCCA‑CCCGCACCGCTTAACCCCGGTGGGCGCGGATTTACCCGCGAATGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGc < 1:7196469/150‑1 (MQ=255) cTAAAGCCGCTCCTA‑CAAGGAACGCGTAACCCCGGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGc > 2:2131756/1‑150 (MQ=255) tAAAGCCGCTCCTA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGcc > 2:4439204/1‑150 (MQ=255) tAAAGCCGCTCCTA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGcc > 1:6524340/1‑150 (MQ=255) tAAAGCCGCTCCTA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGcc > 1:3327296/1‑150 (MQ=255) tAAAGCCGCTCCTA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGcc > 2:7047765/1‑150 (MQ=255) aaaGCCGCTCCTA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACCGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCct > 2:4381355/1‑150 (MQ=255) aGCCGCCCCTA‑CCCGTACCGCGTACCCCCTTTCGGCGGGGCAATCGCCGCGAACGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCcttc < 2:2736734/150‑1 (MQ=255) ccGCTCCTA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCcttctt > 2:5663914/1‑150 (MQ=255) ccGCTCCTA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCcttctt > 1:2783187/1‑150 (MQ=255) cGCTCCTA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCttcttc > 2:1029628/1‑150 (MQ=255) gCTCCTA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCa > 2:6796431/1‑150 (MQ=255) gCTCCTA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCa > 1:3035889/1‑150 (MQ=255) gCTCCTA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCa > 1:3260455/1‑150 (MQ=255) gCTCCTA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCa > 2:7693223/1‑150 (MQ=255) gCTCCTA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCa > 1:4097904/1‑150 (MQ=255) cTCCTA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCAt > 2:3262542/1‑150 (MQ=255) ccTA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGc > 1:501463/1‑150 (MQ=255) cTA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCa > 2:670072/1‑150 (MQ=255) cTA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCa > 2:2332503/1‑150 (MQ=255) cTA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCa > 1:7866286/1‑150 (MQ=255) tA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAg > 1:3808963/1‑150 (MQ=255) tA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAg > 1:4232275/1‑150 (MQ=255) tA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAg > 1:6711180/1‑150 (MQ=255) tA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAg > 1:6786711/1‑150 (MQ=255) tA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCGTGGGGGGTGGCCAGCGCCGTCTGCGTGCAg > 1:6472658/1‑150 (MQ=39) | CTGACCCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTA‑CAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAG > NC_002947/5645118‑5645415 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |