| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,863,918 | A→T | 8.1% | intergenic (+91/+47) | PP_5134 → / ← PP_5135 | hypothetical protein/ABC transporter substrate‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,863,918 | 0 | A | T | 8.1% | 447.2 / 3.2 | 154 | intergenic (+91/+47) | PP_5134/PP_5135 | hypothetical protein/ABC transporter substrate‑binding protein |
| Reads supporting (aligned to +/- strand): ref base A (124/10); new base T (3/11); total (130/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.15e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 154 total aligned reads displayed.
TCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGC‑GGGTAAACCC‑GCTCCTAC‑GGGCGGCCTTTGTACAACCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCTTGA > NC_002947/5863779‑5864065 | tCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGC‑GGGTAAAACC‑GCTCCAAC‑CGGCGGGCGGTGTTAAACCACCCCT‑GTGGGTCCCCCACCCAAACCGCGGGGGAGCCGGtt > 2:785661/1‑150 (MQ=255) cAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGC‑GGGTAAACCC‑CCACCAAC‑GGGCGGCCATTGTACAACCACCGAT‑GTGCGTCCACCACCAAACCGGCGTAGGAGCGGGTTTAACCGCGAAGAGGCCGAc > 2:3369115/1‑150 (MQ=38) gTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGC‑GGGTAAACCC‑GCTCCTAC‑GGGCGGCCTTTGTACAACCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGAccc > 2:7853256/1‑150 (MQ=255) ttGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGC‑GGGTAAACCC‑CCTCCAAC‑GGGCGGCCGTTGTACAACCACCCAT‑GTGCGTCCACCACCCAACCGGCGGAGGAGCGGGTTTACCCGCCAAGAGGCCGACCCt > 2:6405658/1‑150 (MQ=38) ttGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGC‑GGGTAAAACC‑CCGCCGAA‑CGGCGGCCGTTGTACAACCACCCAA‑GTGCGTCCACCACCAATCCCGCGGAGGAGCGGGTTTAACCGCGAAGAGGCCGACCCt > 2:2513830/1‑150 (MQ=255) gcTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGC‑GGGTAAACCC‑GCTCCTAC‑GGGCGGCCGTTTTACAACCACCGCT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCAGCACTAGt > 2:530120/1‑150 (MQ=25) ggTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGC‑GGGTAAACCC‑GCTCCTAC‑GGGCGGCCGTTGTAAAACCACCGAT‑GTGCGTCCACCACCAAAACGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCACCCAGCAATAGTGaa > 2:4222058/1‑150 (MQ=37) gTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGC‑GGGTAAACCC‑GCTACTAC‑GGGCGGCCTTTGTACAACCACCGAT‑GTGCGTCCACCACCAATACGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAg > 2:2810490/1‑150 (MQ=255) acaGATTTGAGCCAGCAGGGTTGGCCTGTTGGC‑GGGTTAAACC‑GCTCCTAA‑GGGGGGGCGTTTTAGAACCAACGAT‑GTTGGTCCACCAACAAAACGGGGTTGGTTCGGGTTTTAGCGCGAAGATGGCGACCCTGGAATAGTGATTCGttt > 2:2228739/1‑149 (MQ=255) acaGATTTGAGCCAGCAGGGTTGGCCTCTTAGC‑GGGTAAAACC‑CCAACAAA‑GGGCGGCCGTTGTAAAAACACCCAA‑GTGGGTACAACACCAAAACCGCCTTGGAGCCGGTTTTACCGCCAAGATGCCGACCCAGCAAAATTGAAACGTTa > 2:2228654/1‑150 (MQ=255) caGATTTGAGCCAGCAGGGTTGGCCTCTTCGC‑CGGTAAACCC‑CCTCCGAC‑GGGCGGGCGTTTTAAAACCACCCAG‑GTGCGGCCACCACCAAAACCGCGGGGGGGCGGGGTTAACCGCGAAGAGGCCCACCCCGCAAACGTGAAGCGGTaa > 2:8091353/1‑149 (MQ=255) aGATTTGAGCCAGCAGGGTTGGCCTCTTCGC‑GGGTAAAACC‑GCTCCTAC‑CGGCGGGCGTTGTACAACCCCCGAT‑GTGCGTCCACCACCAAACCCGCCTACGAGCGGGGTTAACCCCGAAGAGGCCGACCCAGCAATAGTGAAGCGTTAct > 2:5544906/1‑150 (MQ=255) gATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGGTAAACCC‑‑CGCCGACGGGGGGGCCTTTTTA‑AACCACCCAA‑GTGCGTCCCCCCCCAAAACGGCGGGGGGGCGGGGGTAACCCCCAACAGGCCCACCCAGCCAAATTGGAGCGGTAatg > 2:13656/1‑150 (MQ=255) tGAGCCTGTTGGGTTGGCCTCTTGGG‑GGTTAAACCC‑GCACCTCC‑GGGCGGACTTTTTACACCCACCGTT‑GTGCTTCCACAAAAAATCGGGGTTTGGTGCGTTTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTgg < 2:5095436/150‑1 (MQ=255) ccctgccgggTTGGCCTCTCCGG‑GTGTAAACCC‑GCTCCTAG‑GGGCGGCCTTTTTACAACCACGTCT‑GTGCGACAACCACCAATCGGGGTTTGGTGGGGTTTTACCCGCTAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGcc < 2:644620/143‑1 (MQ=255) ctggtggTTGGGCTTTTTGG‑GGTTAAACCCGGCTCCT‑C‑GGGGGGCCGTTGGAAAACCCCCGGTGGTGCGCCCACCACCACGCGGGGTTCGGGGGGGTTTTCCCCGCGAAGCGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCAc < 2:4851929/145‑1 (MQ=255) ggCCTCTTCGC‑GGGTAAACCC‑CCGACAAC‑GGGCGGCCGTTGTAAAACCACCCAA‑GTGCGGCCCCCACCAAACCGGCGGTGGAGCGGGTTTAACCGCGAAGAGGCCGACCCAGCAATAGTGAAGCGTTACTGCGGGGCCACCATCACCGAc > 2:26362/1‑150 (MQ=255) ggagc‑gGGTTTACCC‑GCTCCTAC‑GGGCGGCCTTTGTACAACCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCg > 2:1788242/4‑150 (MQ=255) ggggtttAAACCC‑CCCCCTCG‑GGGCGGCCTTTTACCCACCCCCTAT‑GGGCTCCCACCACCACCCGGGGGTTGGAGGGGTTTTCCCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTc < 2:3562875/144‑1 (MQ=255) ggttAACCCC‑CCTCCTCG‑GGGCGGCATTTTAACACCCACCGTT‑GGGCGCCCACCACAACGCGGGGTTTGGGGGGGGTTAACCCGCTACTAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATa < 2:8290056/147‑1 (MQ=255) gggTAAACCC‑GCTCCTAC‑GGGCGGCCTTTGTACAACCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATa > 2:7431286/1‑150 (MQ=255) gggTAAACCC‑GCTCCTAC‑GGGCGGCCTTTGTACAACCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATa > 2:8594926/1‑150 (MQ=255) ggTAAACCC‑GCTCCTAC‑GGGCGGCCTTTGTACAACCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGcc < 2:1428693/143‑1 (MQ=255) ggTAAACCC‑GCTCCTAC‑GGGCGGCCTTTGTACAACCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGcc > 1:1428693/1‑143 (MQ=255) ggTAAACCC‑GCTCCTAC‑GGGCGGCCTTTGTACAACCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAg > 1:4113366/1‑150 (MQ=255) tAAACCC‑GCTCCTAC‑GGGCGGCCTTTGTACAACCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAgcg > 2:403708/1‑150 (MQ=255) tAAACCC‑GCTCCTAC‑GGGCGGCCTTTGTACAACCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAgcg > 2:3693988/1‑150 (MQ=255) cccc‑GCCCCTCC‑GGGCGCCCTTTTCACACCCACGGTT‑GTGCGCCCCCCCCAACGCGGGCTTTGGTGGGGTTTTCCCCGCTATGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCtt < 2:2749551/149‑1 (MQ=255) ccc‑GCTCCTAC‑GGGCGGCCTTTGTACAACCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTg > 2:6028673/1‑150 (MQ=255) ccc‑GCTCCTAC‑GGGCGGCCTTTGTACAACCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTg > 1:8644636/1‑150 (MQ=255) ccc‑GCTCCTAC‑GGGCGGCCTTTGTACAACCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTg > 1:6112152/1‑150 (MQ=255) ccc‑GCTCCTAC‑GGGCGGCCTTTGTACAACCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTg > 1:7910254/1‑150 (MQ=255) ccc‑GCTCCTAC‑GGGCGGCCTTTGTACAACCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTg > 1:7673665/1‑150 (MQ=255) cc‑GCTCCTAC‑GGGCGGCCTTTGTACAACCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTgc > 1:6121234/1‑150 (MQ=255) cc‑GCTCCTAC‑GGGCGGCCTTTGTACAACCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTgc > 2:5287693/1‑150 (MQ=255) cc‑GCTCCTAC‑GGGCGGCCTTTGTACAACCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTgc > 2:6131472/1‑150 (MQ=255) c‑GCTCCTAC‑GGGCGGCCTTTGTACAACCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTgcg > 2:454909/1‑150 (MQ=255) gCTCCTAC‑GGGCGGCCTTTGTACAACCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTgcgc > 2:4487933/1‑150 (MQ=255) ccccgcc‑GGGGGGCCTTTTTACAACCCCCTCT‑GTGCGCCCACCCCCACGCCGGCTTTGGTGGGTGTTTCCCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGcc < 2:4218226/144‑1 (MQ=255) tCCTAC‑GGGCGGCCTTTGTACAACCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCa > 2:4022366/1‑150 (MQ=255) tAC‑GGGCGGCCTTTGTACAACCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTc > 1:2624887/1‑150 (MQ=255) naC‑GGGCGGCCTTTGTACAACCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATa > 1:1953552/2‑91 (MQ=255) c‑GGGCGGCCTTTGTACAACCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCgg > 1:2760507/1‑150 (MQ=255) ggggggCCTTTGAACAACCACGGTT‑GGGCGCCCACCACCACTCCGGCTTTGGTGGGGGTTTACCCGCTAAGTGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGc < 2:666729/150‑1 (MQ=255) gggCGGCCTTTGTACACCCCCCGAG‑GGGCGCCCACCACCACGCGGGCGTCGGCGCGGGTTTACCCGCGAAGCGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGc < 2:7255466/150‑1 (MQ=255) gggCGGCCTTTGTACAACCACCGAT‑GTGCGTCCCCCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCACGAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGc > 2:4547781/1‑150 (MQ=255) gggCGGCCTTTGTACAACCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCAtt > 1:5419799/1‑146 (MQ=255) ggcggcATTTGAACAACCACCGTT‑GGGCGACCCCCACCAATCCGGCGTCGGTGGGGGTTTCCCCGCTATGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGcc < 2:4989567/150‑1 (MQ=255) cggcCTTTGTACAACCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAg > 1:3021089/1‑150 (MQ=255) ggcCTTTGTACAACCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGa > 2:8099222/1‑150 (MQ=255) cTTTGTACAACCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATc > 1:3978304/1‑150 (MQ=255) cTTTGTACAACCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATc > 2:1220981/1‑150 (MQ=255) cTTTGTACAACCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATc > 2:1074391/1‑150 (MQ=255) cTTTGTACAACCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATc > 1:7218010/1‑150 (MQ=255) tcaaCAACCACCGTG‑GTGCTACAACCACAAAACCGGGTGAGGTGCGTGTTAACCCGCTAAGAGCCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTgg < 2:7641904/147‑1 (MQ=255) tGTACAACCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGATGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTgg > 1:5031372/1‑150 (MQ=255) cAACCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCAc > 2:5840582/1‑150 (MQ=255) aaCCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACg > 1:1944829/1‑150 (MQ=255) aaCCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACg > 2:2467044/1‑150 (MQ=255) aaCCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACg > 2:1787289/1‑150 (MQ=255) aaCCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACg > 1:4048520/1‑150 (MQ=255) aaCCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACg > 1:7998975/1‑150 (MQ=255) aaCCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCAGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACg > 1:4712925/1‑150 (MQ=255) caccGTT‑GGGCGCCCACCACCAAGCCGGCTTTGGCGGGGTTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGtt < 2:4968664/150‑1 (MQ=255) caccGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGtt > 2:1559766/1‑150 (MQ=255) caccGAT‑GTGCGACCACCACCAACCCGGCTTAGGAGCGGGTTAACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGtt < 2:8599951/150‑1 (MQ=255) accGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGttt > 2:8204069/1‑150 (MQ=255) accGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGttt > 1:7013755/1‑150 (MQ=255) accGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGttt > 2:7360511/1‑150 (MQ=255) accGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGttt > 2:5065817/1‑150 (MQ=255) accGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGttt > 1:8492338/1‑150 (MQ=255) ccGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGtttt > 1:8059594/1‑150 (MQ=255) ccGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGtttt > 2:1585752/1‑150 (MQ=255) ttgggCGACCACCACCACCCGGGCGTAGGCGGGGTTTTACCCGCGTTGTGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAg < 2:6826152/146‑1 (MQ=255) gtgCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGaa > 2:864387/1‑150 (MQ=255) tcaaccaccaAGCCGGCGTAGGTGGGGTTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCa < 2:7114207/147‑1 (MQ=255) accaccaATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGACGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGACTCTGGTCACGGTTTTTAGAAGCCCAGAc > 2:5498650/1‑150 (MQ=255) accaccaATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGAc > 2:5739800/1‑150 (MQ=255) accaccaATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGAc > 2:722767/1‑150 (MQ=255) accaccaATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGAc > 1:5519696/1‑150 (MQ=255) accaccaATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGAc > 2:2907034/1‑150 (MQ=255) ccaccaATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACa > 2:7380093/1‑150 (MQ=255) caccaATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACaa > 1:7818577/1‑150 (MQ=255) accaATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACaaa > 1:2019269/1‑150 (MQ=255) accaATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACaaa > 1:2202736/1‑150 (MQ=255) accaATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACaaa > 1:34661/1‑150 (MQ=255) accaATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACaaa > 1:34658/1‑150 (MQ=255) accaATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACaaa > 1:2906956/1‑150 (MQ=255) ccaATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTc > 1:5859130/1‑110 (MQ=255) ccaATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAg > 1:5205980/1‑150 (MQ=255) ccaATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAg > 1:6650189/1‑150 (MQ=255) ccaATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAg > 1:2212780/1‑150 (MQ=255) ccaATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAg > 1:4434583/1‑150 (MQ=255) caATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGt > 2:5748004/1‑150 (MQ=255) ccGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACATGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGtt > 1:6290770/1‑150 (MQ=255) cggcggTGGCGCGGGTAACCCCCCGACGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTc < 1:5782202/150‑1 (MQ=255) ggCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAGGTCGTTCt > 1:6751309/1‑150 (MQ=255) gCGTTGTAGGGGTTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCtt < 2:1264294/150‑1 (MQ=255) gCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCtt > 1:7710069/1‑150 (MQ=255) gTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCTTGa > 2:4864069/1‑150 (MQ=255) | TCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGC‑GGGTAAACCC‑GCTCCTAC‑GGGCGGCCTTTGTACAACCACCGAT‑GTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCATTCGGCCAGAATCTGGTCACGGTTTTTAGAAGCCCAGACAAAGTCGTTCTTGA > NC_002947/5863779‑5864065 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |