| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,902,783 | C→G | 18.2% | intergenic (‑178/+56) | PP_5172 ← / ← PP_5173 | hypothetical protein/RND family transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,902,783 | 0 | C | G | 18.2% | 580.1 / 123.5 | 244 | intergenic (‑178/+56) | PP_5172/PP_5173 | hypothetical protein/RND family transporter |
| Reads supporting (aligned to +/- strand): ref base C (100/97); new base G (29/15); total (131/113) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.39e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.96e-02 | |||||||||||
Only 100 of 244 total aligned reads displayed.
GCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCC > NC_002947/5902635‑5902930 | gCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCAGCGAATACGGTGGT‑Cg > 2:6942412/1‑150 (MQ=255) agagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGAt < 2:2627985/150‑1 (MQ=255) agagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGAt < 2:6715533/150‑1 (MQ=255) gagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATg < 1:1380153/150‑1 (MQ=255) gagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATg < 2:6802956/150‑1 (MQ=255) gAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATc < 1:2386641/150‑1 (MQ=255) gAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATc < 2:4978091/150‑1 (MQ=255) gAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATc < 1:4806784/150‑1 (MQ=255) gAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑AGATGCACCATc < 2:2258615/150‑1 (MQ=255) gAAGGGGTTGTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATc < 1:5557606/150‑1 (MQ=255) tttGCGCCTGGCTTGAGGGCAATAGTAGTGCGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGT‑GCATCGACCACCGTATTcgc < 1:4181742/150‑1 (MQ=25) tttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGT‑GCATCGACCACCGTATTcgc < 2:761220/150‑1 (MQ=25) ttGCGCCTGTATTGAGGGAATTAGTAGTGTGGCGGGATTATTCTTAAATATACTGTTTAATAATTTTTATTTAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGAGAATACGGTGGT‑CGATGCACCATCGCATTcgcg < 2:7526495/150‑1 (MQ=255) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTcgcg < 1:8113900/150‑1 (MQ=255) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACACGCGAATAAGGTGGT‑GGTTTGACCAAAGCATTcgcg > 1:2997110/1‑150 (MQ=255) tGCGCCTGGCTTGAGGGCAATTTTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGATTTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCgg < 1:4766284/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGT‑GCATCGACCACCGTATTCGCgg < 2:1635759/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGT‑GCATCGACCACCGTATTCGCgg < 2:3180474/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGT‑GCATCGACCACCGTATTCGCgg < 2:525135/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCgg < 1:6715669/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCgg < 2:1979961/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCgg < 1:7227906/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTATTAAAAATACTGTTTAATAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCgg < 1:975229/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGGAGTGCGGCGGGATTCTTCTGAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATGCGCgg < 1:6539597/150‑1 (MQ=39) gcCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGGTGCACCATCGCATTCGCGGGTa > 2:2404978/1‑150 (MQ=255) gcCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTa < 1:914927/150‑1 (MQ=255) ccTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTaa > 2:6524660/1‑150 (MQ=255) cTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTaaa < 1:1442410/150‑1 (MQ=255) tGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAAc < 1:3895968/150‑1 (MQ=255) ttGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTTACCCCGAAAAAGGTGGT‑AGATTCACCATAGCATTCGCGGGTAAAacccc > 1:2509814/1‑148 (MQ=255) ttGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCCTTCGCGGGTAAACCCGc > 1:2086775/1‑150 (MQ=255) tGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCt < 2:8812787/150‑1 (MQ=255) ggCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTTACCGCGCATAAGGTGGT‑GGGTGCACCCACGCAATAGCGGGTAAACCCGCGccga > 1:2977664/1‑148 (MQ=255) attgtattGAGGCGGTATTATTATTAAAAATACTTTTTAATAATTTTTATATAACAATTTAATATAACACGCCTCTGTTAGTAGGGGTTTTACCCGCTATTAGGTTGGT‑CTATGAACCATCGAATTCGCGGGTAAACCCGCTCCTACCAg < 2:3015721/147‑1 (MQ=255) cgttgttaGGCGGGATTTTTCTTAAAAATACTGTTTAACAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CTATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAggg < 2:6671212/143‑1 (MQ=38) gtagtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAgggg > 2:3799901/1‑150 (MQ=255) tagtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGCATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑c > 2:4831518/1‑150 (MQ=255) gCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTAGCGGGTAAACCCGCTCCTACCAGGGG‑CCAGATgg > 2:1516201/1‑150 (MQ=255) gCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGGGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCAGATgg > 1:7920020/1‑150 (MQ=255) ttCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAgg > 2:6481832/1‑150 (MQ=255) ttCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAgg > 2:2312973/1‑150 (MQ=255) tCTTAAAAATACTTTTTAAGAATTTTTATATAACAATTTAATACAACACGCCTCTGGTTGGCGCGGTTTTCCCCGCGAATAGGGTGGT‑CGTTGCACCATCGCATGGGCGGTAAAACCCGCTCCTACCAGGGGCCCATATGGcccctggta < 1:3488815/150‑7 (MQ=255) ttAAAAATACTGTTTAATAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATAGGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCgt < 2:5151816/150‑1 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCgt > 2:4307614/1‑150 (MQ=255) tACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCGCGAATACGGTGGG‑CGATGCACCCTCGCATTCGCGGGTAAAACCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTg > 2:4759967/1‑150 (MQ=255) tttAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCAGATGGGCCTTCAGGCGTGTTTATGCGGCt > 2:8285173/1‑150 (MQ=255) tttAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATAGCATTAGCGGGTAAACCCCCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTTCGGcg > 1:8609648/1‑149 (MQ=255) tAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAAACCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTcg > 2:5492840/1‑150 (MQ=255) aaGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTcgc < 2:5797197/150‑1 (MQ=255) tttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTTACCCCGAAAACGGTTGT‑CGATTCACCATCCCATTCCCGGGTAAACCCCCTCCAACCAGGGG‑CCCTATTGGCCGTCAGGCGTGTTTATGGGGGTCGCGGGTCtt > 1:3337326/1‑150 (MQ=255) tttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCGCGAAAAAGGTGGT‑CGATTCACCATCGCATTAGCGGGGAAAACCCCTCCTACCACGGG‑CCATATGGGCCATAAGGCGTGTTTCTGCGGCGGGCGGATcgt > 1:7113099/1‑148 (MQ=255) tatataACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGt < 2:7963279/150‑1 (MQ=255) tatataACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGt < 1:3628880/150‑1 (MQ=255) ataACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTAcc < 2:8642310/150‑1 (MQ=255) aaCCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAg < 2:4233965/150‑1 (MQ=255) aaCCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAg < 1:8802411/150‑1 (MQ=255) aaCCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGGTTAACCCCGAAAACCGTGGT‑CGAATCACCAACGCAGTAGCGGGGTAACCCCCACCAACCCCGGG‑CCCCATGGGGCGTCAGGCGTGTTTATGGGGCTCGCGGGTCATGTACCAg > 1:7693247/1‑150 (MQ=255) ccATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTGTCTGCGGCTCGCGGATCTTGTACCAGGc > 2:2058360/1‑150 (MQ=255) agagAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATAAGGTGGT‑CGATGCACCATCGCAGTCGCGGGTAAACCCGCTCCTACCCGGGG‑CCCTATGGGCCTTCAGGCGTGTTTGTGCGGCGCGCGGCTCTTGTACCAGGCCCCGTAc > 2:3302783/1‑150 (MQ=38) gagaACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACa < 2:2846590/150‑1 (MQ=255) cacGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCCGGGG‑CCAGATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCCCGGACAGCGcc > 2:1904014/1‑150 (MQ=255) cacGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGcc < 1:6501224/150‑1 (MQ=255) cctGGTAGGAGCGGGTTTACCCGCGAAAGCGATTGTGCCACG‑ACCACCGTAATCGCGGGTAAAACCGCTCCTACCAGGGG‑CCATAAGGGCCTTCAGGCGTGTTTCAGCGGCTCGCGGGTCATGTACCAGGCCACGTACAGCGCCGGCAgg > 1:5102734/2‑150 (MQ=18) ctGGTAGGAGCGGGTTTACCCGCGAATGCGATGGT‑GCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCCGAGGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGa > 2:5790454/1‑150 (MQ=18) gggTTGGAGCGGGTTTACCCGCGAATACTGTGGT‑CGAGGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGaa < 2:3661331/149‑1 (MQ=255) tAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAcag < 2:8203516/150‑1 (MQ=255) aGCGGGTTTACCCGCGAATGCGATGGT‑GCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCCTATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCCCGTACAGCGCCGGCAGGAACagcagc > 1:6221270/1‑150 (MQ=21) gTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAc < 1:8315710/139‑1 (MQ=255) ccGCGAATGCGATGGT‑GCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:3563101/1‑150 (MQ=25) ccGCGAATGCGATGGT‑GCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:8705348/1‑150 (MQ=25) ccGCGAATGCGATGGT‑GCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:5423640/1‑150 (MQ=25) ccGCGAATGCGATGGT‑GCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:5520286/1‑150 (MQ=25) ccGCGAATGCGATGGT‑GCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGAGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCTGCAAGGt > 2:7236955/1‑150 (MQ=25) ccGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCCTCTGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTCCAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:3279991/1‑150 (MQ=255) ccGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:935613/1‑150 (MQ=255) ccGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:8599392/1‑150 (MQ=255) ccGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:7959047/1‑150 (MQ=255) ccGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:5689016/1‑150 (MQ=255) ccGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:8203327/1‑150 (MQ=255) ccGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:1066439/1‑150 (MQ=255) ccGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:1165904/1‑150 (MQ=255) ccGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:1189540/1‑150 (MQ=255) ccGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:1320381/1‑150 (MQ=255) ccGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:2670366/1‑150 (MQ=255) ccGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:6111864/1‑150 (MQ=255) ccGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCACCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGACAGCAAGGt > 2:7428366/1‑150 (MQ=255) cagcgAATGCGATGGT‑GCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:4606565/3‑150 (MQ=25) cgcgAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc > 1:7100827/1‑150 (MQ=255) cgcgAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc > 2:6322738/1‑150 (MQ=255) gcgAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 2:2423738/1‑150 (MQ=255) gcgAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 1:763670/1‑150 (MQ=255) aaTACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCa > 1:7301920/1‑150 (MQ=255) tACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACg > 1:1883063/1‑150 (MQ=255) agggtggt‑CGATGCACCTTCGCATGCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACga < 1:6137993/148‑1 (MQ=255) aCGGTGGT‑CGTTGCACCATCGCATTGGCGGGTAACCCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACga < 1:2846598/150‑1 (MQ=255) ggtggt‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCa < 1:4969512/145‑1 (MQ=255) tggt‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatgat > 1:5857621/1‑150 (MQ=255) tggt‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatgat < 2:3919112/150‑1 (MQ=255) gt‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATcc > 1:4000692/1‑150 (MQ=255) gt‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATcc > 2:5231010/1‑150 (MQ=255) | GCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCC > NC_002947/5902635‑5902930 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |