| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,902,793 | T→C | 17.2% | intergenic (‑188/+46) | PP_5172 ← / ← PP_5173 | hypothetical protein/RND family transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,902,793 | 0 | T | C | 17.2% | 583.4 / 101.5 | 260 | intergenic (‑188/+46) | PP_5172/PP_5173 | hypothetical protein/RND family transporter |
| Reads supporting (aligned to +/- strand): ref base T (112/97); new base C (28/15); total (148/112) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.81e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.07e-04 | |||||||||||
Only 100 of 264 total aligned reads displayed.
GAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGG > NC_002947/5902645‑5902942 | gAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATc < 1:4806784/150‑1 (MQ=255)gAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATc < 1:2386641/150‑1 (MQ=255)gAAGGGGTTGTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATc < 1:5557606/150‑1 (MQ=255) gTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTGTACCCGCGAATACGGTGGT‑CGATGCACCATCGCTTTc > 1:628358/1‑150 (MQ=255) tttGCGCCTGGCTTGAGGGCAATAGTAGTGCGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGT‑GCATCGACCACCGTATTcgc < 1:4181742/150‑1 (MQ=25) tttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTcgc > 2:5738779/1‑150 (MQ=255) tttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTcgc < 2:5833385/150‑1 (MQ=255) ttGCGCCTGTATTGAGGGAATTAGTAGTGTGGCGGGATTATTCTTAAATATACTGTTTAATAATTTTTATTTAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGAGAATACGGTGGT‑CGATGCACCATCGCATTcgcg < 2:7526495/150‑1 (MQ=255) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTcgcg < 1:3928138/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGACCACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCgg < 2:7457674/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGT‑GCATCGACCACCGTATTCGCgg < 1:2995570/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGT‑GCATCGACCACCGTATTCGCgg < 1:8202702/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCgg < 1:6715669/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCgg < 2:1979961/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCgg < 2:26640/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCgg < 2:3850790/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGATGGT‑GCATCGACCACCGTATTCGCgg < 1:5449797/150‑1 (MQ=37) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTATTAAAAATACTGTTTAATAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCgg < 1:975229/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGGAGTGCGGCGGGATTCTTCTGAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATGCGCgg < 1:6539597/150‑1 (MQ=39) gcCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGGTGCACCATCGCATTCGCGGGTa > 2:2404978/1‑150 (MQ=255) gcCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTa < 1:914927/150‑1 (MQ=255) tGGCTTGAGGGCAATAGTAGCGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGT‑GCATCGACCACCGTATTCGCGGGTAAAc < 2:8205645/150‑1 (MQ=25) gCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGT‑GCATCGACCACCGTATTCGCGGGTAAAccc < 2:8413130/150‑1 (MQ=25) ttGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTTACCCCGAAAAAGGTGGT‑AGATTCACCATAGCATTCGCGGGTAAAacccc > 1:2509814/1‑148 (MQ=255) aaTAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGT‑GCATCGACCACCGTATTCGCgg < 1:4795503/132‑1 (MQ=25) aaTAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCa > 2:3588953/1‑150 (MQ=255) aaTAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCAATCGCGGGTAAAACCGCACCTACCa > 1:8553439/1‑150 (MQ=255) aTAGTAGTGAGGCGGTATTATTCTTAAAAATACTTTTTAACAATTTTTATATAACAATTTAACACAACACGCCTCTGGTTGGAGCGGTTTTACCCGCGAATACGGTGGT‑CTATGCACAATGGCATTCGCGGTTAACCCCGCTCCTACCAg < 2:3015705/150‑1 (MQ=255) tagtagTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAgg > 1:7963279/1‑150 (MQ=255) gtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGT‑GCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGAGG‑cgt < 2:2070324/150‑3 (MQ=17) gCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTAGCGGGTAAACCCGCTCCTACCAGGGG‑CCAGATgg > 2:1516201/1‑150 (MQ=255) gCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGGGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCAGATgg > 1:7920020/1‑150 (MQ=255) attCTTAAAAATCCTGTTTAAGATTTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGTTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAg < 2:1754981/150‑1 (MQ=255) ttCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAgg > 2:6481874/1‑150 (MQ=255) ttCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAgg > 2:2312973/1‑150 (MQ=255) tCTTAAAAATACTTTTTAAGAATTTTTATATAACAATTTAATACAACACGCCTCTGGTTGGCGCGGTTTTCCCCGCGAATAGGGTGGT‑CGTTGCACCATCGCATGGGCGGTAAAACCCGCTCCTACCAGGGGCCCATATGGcccctggta < 1:3488815/150‑7 (MQ=255) tCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGc < 2:6414763/150‑1 (MQ=255) cTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCGCGAATACGGGGGT‑CGATGCACCATCCCAATCGCGGGGAAACCCCCTCCAAACAGGGG‑CCCTAAGGGCCGTAAGGCg > 1:8209119/1‑150 (MQ=255) ttAAAAATACTGTTTAATATTTTTTATATACCCATTTAAGAGAACACGCCTCTGGTTGGCGCGGGTTTACCCGCTAATCGGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCgt < 1:1417726/150‑1 (MQ=38) ttAAAAATACTGTTTAATAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATAGGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCgt < 2:5151816/150‑1 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCgt > 2:3499063/1‑150 (MQ=255) tACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCCTTCGCGGGTAAACCCGCACCTACCACGGG‑CCATATGGGCCATCAGGCGTGTTTCTg > 2:4760146/1‑150 (MQ=255) aCTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGc < 2:5247654/150‑1 (MQ=255) tttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCCCGAATACGGTGGT‑CGATGCACCAACGCATTAGCGGGTAAACCCGCACCAACCACGGG‑CCAAATTGGCCTTAAGGCCTGTTTCTTCGGCGCGCGGAtaat > 1:7112769/1‑147 (MQ=255) tttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCGCGAAAAAGGTGGT‑CGATTCACCATCGCATTAGCGGGGAAAACCCCTCCTACCACGGG‑CCATATGGGCCATAAGGCGTGTTTCTGCGGCGGGCGGATcgt > 1:7113099/1‑148 (MQ=255) ataACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTAcc < 2:8642310/150‑1 (MQ=255) taACCATTGAAGAGAACACGCCTCGGGTCGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCa < 2:8161980/150‑1 (MQ=255) agagAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTAc < 2:7795820/150‑1 (MQ=255) gagaACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACa < 2:2846590/150‑1 (MQ=255) cacGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGcc < 1:6501224/150‑1 (MQ=255) cacGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGcc > 2:545506/1‑150 (MQ=255) cacGCCTCTGGTAGGAGCGGGTTTACCCGCGAATAAGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTGTGCGGCGCGCGGATCTTGTTCCAGGCCACGTACAGCGcc > 1:8736462/1‑150 (MQ=255) gCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGCTGCACCCTCGCATTCGCGGGGAAACCCCCGCCGACCACGGG‑CCATCTGGGCCGTCAGGCGTGGTTCGGCGGCGCGCGGATCATGTACCAGGCCACGTACCGCCCCGGc > 2:526390/1‑150 (MQ=25) cctGGTAGGAGCGGGTTTACCCGCGAAAGCGATTGTGCCACG‑ACCACCGTAATCGCGGGTAAAACCGCTCCTACCAGGGG‑CCATAAGGGCCTTCAGGCGTGTTTCAGCGGCTCGCGGGTCATGTACCAGGCCACGTACAGCGCCGGCAgg > 1:5102734/2‑150 (MQ=18) ctGGTAGGAGCGGGTTTACCCGCGAATGCGATGGT‑GCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGa > 2:5790959/1‑150 (MQ=21) ggTTGGAGGGGGTTCCCCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGTTAACCCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAc < 1:3316404/150‑1 (MQ=255) gTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAg > 1:166855/1‑150 (MQ=255) aCCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGc > 1:3897107/1‑90 (MQ=255) cccGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAgg > 2:872486/1‑150 (MQ=255) ccGCGAATGCGATGGT‑GCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:3203102/1‑150 (MQ=25) ccGCGAATGCGATGGT‑GCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:7379661/1‑150 (MQ=25) ccGCGAATGCGATGGT‑GCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:4384650/1‑150 (MQ=25) ccGCGAATGCGATGGT‑GCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:8705348/1‑150 (MQ=25) ccGCGAATGCGATGGT‑GCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGAGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCTGCAAGGt > 2:7236955/1‑150 (MQ=25) ccGCGAATGCGATGGT‑GCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGAGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:4303293/1‑150 (MQ=25) ccGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCCTATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGACCAGCAGCGTCAGCAAGGt > 2:3280019/1‑150 (MQ=255) ccGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:1320381/1‑150 (MQ=255) ccGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:935613/1‑150 (MQ=255) ccGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:5689016/1‑150 (MQ=255) ccGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:6111864/1‑150 (MQ=255) ccGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:1066439/1‑150 (MQ=255) ccGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:1165904/1‑150 (MQ=255) cagcgAATGCGATGGT‑GCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:4606565/3‑150 (MQ=25) gcgAATGCGATGGT‑GCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGAGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 2:6678662/1‑150 (MQ=25) gcgAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 2:2423738/1‑150 (MQ=255) gcgAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 1:763670/1‑150 (MQ=255) aaTACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCa < 2:2229912/150‑1 (MQ=255) tACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACg > 1:1883063/1‑150 (MQ=255) agggtggt‑CGATGCACCTTCGCATGCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACga < 1:6137993/148‑1 (MQ=255) aCGGTGGT‑CGTTGCACCATCGCATTGGCGGGTAACCCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACga < 1:2846598/150‑1 (MQ=255) aCGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACga < 2:6786948/150‑1 (MQ=255) ggtggt‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCa < 1:4969512/145‑1 (MQ=255) ggtggt‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatg > 2:4990859/1‑150 (MQ=255) gtggt‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatga > 1:7725987/1‑150 (MQ=255) gtggt‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatga < 1:3588953/150‑1 (MQ=255) gtggt‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatga < 2:1474309/150‑1 (MQ=255) tggt‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGc > 2:1904829/1‑66 (MQ=255) tggt‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatgat > 1:5857621/1‑150 (MQ=255) tggt‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatgat < 2:3919112/150‑1 (MQ=255) gt‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATcc > 1:4000692/1‑150 (MQ=255) tgcatcgaccaccGTATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATccc < 2:6622741/143‑1 (MQ=255) aTGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGcc > 1:3096799/1‑150 (MQ=255) aCCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATc > 1:2055819/1‑150 (MQ=255) cATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCAt > 2:7065557/1‑150 (MQ=255) cATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCAt > 2:7065419/1‑150 (MQ=255) aTCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATg < 2:3092343/150‑1 (MQ=255) aTCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATg > 2:4836476/1‑150 (MQ=255) aTCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATg > 2:3669694/1‑150 (MQ=255) tCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATgg > 2:4676737/1‑150 (MQ=255) tCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATgg > 1:7254866/1‑150 (MQ=255) | GAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGT‑CGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGG > NC_002947/5902645‑5902942 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |