| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,902,796 | C→T | 17.2% | intergenic (‑191/+43) | PP_5172 ← / ← PP_5173 | hypothetical protein/RND family transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,902,796 | 0 | C | T | 17.2% | 607.8 / 107.7 | 262 | intergenic (‑191/+43) | PP_5172/PP_5173 | hypothetical protein/RND family transporter |
| Reads supporting (aligned to +/- strand): ref base C (127/87); new base T (28/17); total (155/107) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.42e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.32e-01 | |||||||||||
Only 100 of 264 total aligned reads displayed.
AGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGT > NC_002947/5902647‑5902945 | ggggTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGCGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCa < 1:5261504/150‑1 (MQ=255) tttGCGCCTGGCTTGAGGGCAATAGTAGTGCGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTcgc < 1:4181742/150‑1 (MQ=25) ttGCGCCTGTATTGAGGGAATTAGTAGTGTGGCGGGATTATTCTTAAATATACTGTTTAATAATTTTTATTTAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGAGAATACGGTGGTCGATGCACCATCGCATTcgcg < 2:7526495/150‑1 (MQ=255) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTcgcg < 2:6768920/150‑1 (MQ=37) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTcgcg < 1:3928138/150‑1 (MQ=255) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTcgcg < 1:8113900/150‑1 (MQ=255) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACACGCGAATAAGGTGGTGGTTTGACCAAAGCATTcgcg > 1:2997110/1‑150 (MQ=255) tGCGCCTGGCTTGAGGGTAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:2400560/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGACCACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 2:7457674/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 2:3180474/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 2:1635759/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 2:525135/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:6658676/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:2897358/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:7227906/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGGAGTGCGGCGGGATTCTTCTGAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATGCGCgg < 1:6539597/150‑1 (MQ=39) cTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTaaa > 2:2954166/1‑150 (MQ=255) tGGCTTGAGGGCAATAGTAGCGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAAc < 2:8205645/150‑1 (MQ=25) gCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAAccc < 2:8413130/150‑1 (MQ=25) cTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCg < 2:2570576/150‑1 (MQ=25) aaTAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:4795503/132‑1 (MQ=25) aaTAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg > 2:4795503/1‑132 (MQ=25) aaTAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGACTCTGGTAGGAGC‑GGGTTTACCCGCGAATAAGGTTGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCa > 2:4555225/1‑150 (MQ=255) cgttgttaGGCGGGATTTTTCTTAAAAATACTGTTTAACAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCTATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAggg < 2:6671212/143‑1 (MQ=38) gtagtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAgggg > 2:3799901/1‑150 (MQ=255) gtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCCCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGAGG‑cgt < 2:2070324/150‑3 (MQ=17) aGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCagat > 2:2409908/1‑150 (MQ=255) gCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTAGCGGGTAAACCCGCTCCTACCAGGGG‑CCAGATgg > 2:1516201/1‑150 (MQ=255) gCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGGGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCAGATgg > 1:7920020/1‑150 (MQ=255) ggtattattCTTAAAAATACTGTTTAATAATTTTTATATACCCATTTAAGACAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATAGGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGc < 2:308929/147‑1 (MQ=38) ttCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAgg > 2:6481832/1‑150 (MQ=255) tCTTAAAAATACTTTTTAAGAATTTTTATATAACAATTTAATACAACACGCCTCTGGTTGGCGC‑GGTTTTCCCCGCGAATAGGGTGGTCGTTGCACCATCGCATGGGCGGTAAAACCCGCTCCTACCAGGGGCCCATATGGcccctggta < 1:3488815/150‑7 (MQ=255) cTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTAACCGCGAATACGGGGGTCGATGCACCATCCCAATCGCGGGGAAACCCCCTCCAAACAGGGG‑CCCTAAGGGCCGTAAGGCg > 1:8209119/1‑150 (MQ=255) ttAAAAATACTGTTTAATATTTTTTATATACCCATTTAAGAGAACACGCCTCTGGTTGGCGC‑GGGTTTACCCGCTAATCGGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCgt < 1:1417726/150‑1 (MQ=38) tGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGGTTAACCCCCGAAAAC‑GTTGTCGATTCACCAACCCATTAGCGGGTAAAACCCCACCAAACACCGG‑CCCAATGGGGCCTAAGGCGTGTTTGTGCgg > 1:482884/1‑150 (MQ=255) tttAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATAGCATTAGCGGGTAAACCCCCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTTCGGcg > 1:8609648/1‑149 (MQ=255) tttAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACCGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCAACCAGGGG‑CCATATGGGCCATCAGGCGTGTTTCTGCGGCt > 1:5016638/1‑150 (MQ=255) tAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTcg > 2:5826461/1‑150 (MQ=255) tttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTAACCGCGAAAAAGGTGGTCGATTCACCATCGCATTAGCGGGGAAAACCCCTCCTACCACGGG‑CCATATGGGCCATAAGGCGTGTTTCTGCGGCGGGCGGATcgt > 1:7113099/1‑148 (MQ=255) tataACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTAACCCCGAATACGGTGGTCGATTCACCATCGCAATCGCGGGTAAACCCGCTCCAACCAGGGG‑CCAGATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGCTGTTGTAc > 1:5658779/1‑150 (MQ=38) ataACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTAcc < 2:8642310/150‑1 (MQ=255) taACCATTGAAGAGAACACGCCTCGGGTCGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCa < 2:8161980/150‑1 (MQ=255) aaCCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAg < 2:4233965/150‑1 (MQ=255) aaCCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAg < 1:8802411/150‑1 (MQ=255) aaCCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGGTTAACCCCGAAAACCGTGGTCGAATCACCAACGCAGTAGCGGGGTAACCCCCACCAACCCCGGG‑CCCCATGGGGCGTCAGGCGTGTTTATGGGGCTCGCGGGTCATGTACCAg > 1:7693247/1‑150 (MQ=255) ccATTT‑AGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCAGATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGcc > 2:6594441/1‑150 (MQ=255) agagAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTAc < 2:7795820/150‑1 (MQ=255) ccTCTGTTTGTAGC‑TGTTTTACCCGCCAACAGGGTGGTCGACCCACCATCGCATACGCGGTAAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCa < 1:928558/150‑1 (MQ=255) ctGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCCGAGGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGa > 2:5790454/1‑150 (MQ=18) tGGTAGGAGC‑GGGTTTCCCCGCGAATCCGGGGGTCGATGCACCATCGCATTCGCGGGTAACCCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGaa < 2:1035914/150‑1 (MQ=255) ggTTGGAGG‑GGGTTCCCCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGTTAACCCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAc < 1:3316404/150‑1 (MQ=255) aGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCCTATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCCCGTACAGCGCCGGCAGGAACagcagc > 1:6221270/1‑150 (MQ=21) gTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAc < 1:8315710/139‑1 (MQ=255) gTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAg > 1:166855/1‑150 (MQ=255) aCCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGc > 1:3897107/1‑90 (MQ=255) aCCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGc < 2:3897107/90‑1 (MQ=255) aCCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAg < 2:5658779/150‑1 (MQ=255) cccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAgg > 2:872486/1‑150 (MQ=255) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:5423640/1‑150 (MQ=25) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:5520286/1‑150 (MQ=25) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:4384650/1‑150 (MQ=25) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:3563101/1‑150 (MQ=25) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGAGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCTGCAAGGt > 2:7236955/1‑150 (MQ=25) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCCTCTGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTCCAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:3279991/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:935613/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:1320381/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:7959047/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:2670366/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:1091761/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:1189540/1‑150 (MQ=255) cagcgAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:4606565/3‑150 (MQ=25) cgcgAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc > 2:6322738/1‑150 (MQ=255) cgcgAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc > 1:7100827/1‑150 (MQ=255) cgcgAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc > 2:3388952/1‑150 (MQ=255) gcgAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 1:763670/1‑150 (MQ=255) gcgAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 1:8707564/1‑150 (MQ=255) aaTACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCa < 2:2229912/150‑1 (MQ=255) aaTACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCa > 1:7301920/1‑150 (MQ=255) aaTACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCa > 1:603730/1‑150 (MQ=255) tACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACg > 1:1883063/1‑150 (MQ=255) agggtggtCGATGCACCTTCGCATGCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACga < 1:6137993/148‑1 (MQ=255) ggtggtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCa > 2:4969512/1‑145 (MQ=255) ggtggtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatg > 2:4990860/1‑150 (MQ=255) gtggtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatga < 1:3588953/150‑1 (MQ=255) tggtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGc > 2:1904829/1‑66 (MQ=255) tggtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatgat > 1:5857621/1‑150 (MQ=255) gtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATcc > 2:5231010/1‑150 (MQ=255) gtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATcc > 2:237336/1‑150 (MQ=255) gtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATcc > 1:4000692/1‑150 (MQ=255) aTGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGcc > 1:6417057/1‑150 (MQ=255) aCCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATc > 1:2055819/1‑150 (MQ=255) aCCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATc > 1:2717809/1‑150 (MQ=255) cATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCAt > 2:7065557/1‑150 (MQ=255) cATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCAt > 2:7065419/1‑150 (MQ=255) aTCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATg > 2:3669370/1‑150 (MQ=255) tCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATgg > 2:1953795/1‑150 (MQ=255) tCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATgg > 2:4676737/1‑150 (MQ=255) gCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCg > 2:1983835/1‑150 (MQ=255) gCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCg > 2:286771/1‑150 (MQ=255) cATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGt > 1:3182889/1‑150 (MQ=255) | AGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG‑CCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGT > NC_002947/5902647‑5902945 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |