| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 97,594 | A→C | 8.9% | intergenic (+23/+13) | PP_0090 → / ← PP_0091 | hypothetical protein/putative lipoprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 97,594 | 0 | A | C | 8.9% | 717.3 / 26.5 | 278 | intergenic (+23/+13) | PP_0090/PP_0091 | hypothetical protein/putative lipoprotein |
| Reads supporting (aligned to +/- strand): ref base A (154/94); new base C (5/25); total (159/119) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.31e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 302 total aligned reads displayed.
GGCCCAAGGGGTTTCGTCCTACACGCTGGAGATCGTGCCCAACAGCGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCATATAGCAGCACCTGCGGCTCCATCACCGGCGCCCGCGCTTCCAGGCGATAGCGCTCGCCGGCCTTGAAGTTGTCAAAGC > NC_002947/97445‑97743 | ggCCCAAGGGGTTTCGTCCTACACGCTGGAGATCGTGCCCAACAGCGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGaa < 1:4987094/150‑1 (MQ=255)ggCCCAAGGGGTTTCGTCCTACACGCTGGAGATCGTGCCCAACAGCGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGaa < 2:5668815/150‑1 (MQ=255) cccAAGGGGTTTCGTCCTACACGCTGGAGATCGTGCCCAACAGCGAGGTCAAGGACCAGAACATGGTCGTCTGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAagc < 1:5116569/150‑1 (MQ=255) cAAGGGGTTTCGTCCTACACGCTGGAGATCGTGCCCAACAGCGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAagcag > 1:7062968/1‑150 (MQ=255) cAAGGGGTTTCGTCCTACACGCTGGAGATCGTGCCCAACAGCGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAagcag > 2:4593426/1‑150 (MQ=255) caGGGGTTTCGTCCTACACGCTGGAGATCGTGCCCAACAGCGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAagcagc < 2:7700369/149‑1 (MQ=255) aaGGGGTTTCGTCCTACACGCTGGAGATCGTGCCCAACAGCGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAagcagc > 1:1000229/1‑150 (MQ=255) ggggTTTCGTCCTACACGCTGGAGATCGTGCCCAACAGCGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGccc < 1:1883954/150‑1 (MQ=255) ggggTTTCGTCCTACACGCTGGAGATCGTGCCCAACAGCGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGccc < 1:5351279/150‑1 (MQ=255) gggTTTCGTCCTACACGCTGGAGATCGTGCCCAACAGCGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCTTCGCAGcccc < 1:5496759/150‑1 (MQ=255) gggTTTCGTCCTACACGCTGGAGATCGTGCCCAACAGCGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGcccc > 1:8658210/1‑150 (MQ=255) gTTTCGTCCTACACGCTGGAGATCGTGCCCAACAGCGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCTTCGCAGccccgg < 1:4742269/150‑3 (MQ=255) tttCGTCCTACACGCTGGAGATCGTGCCCAACAGCGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCTTCGCAGccccggg < 2:8311332/150‑4 (MQ=255) tttCGTCCTACACGCTGGAGATCGTGCCCAACAGCGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCcaca < 2:7968231/150‑1 (MQ=255) tttCGTCCTACACGCTGGAGATCGTGCCCAACAGCGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCcaca < 2:2439573/150‑1 (MQ=255) tttCGTCCTACACGCTGGAGATCGTGCCCAACAGCGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCcaca < 1:7137325/150‑1 (MQ=255) ttCGTCCTACACGCTGGAGATCGTGCCCAACAGCGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCacac > 1:5871169/1‑150 (MQ=255) gTCCTACACGCTGGAGATCGTGCCCAACAGCGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACCCTCa > 2:8238641/1‑150 (MQ=255) tCCTACACGCTGGAGATCGTGCCCAACAGCGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACTCAc > 2:5467214/1‑150 (MQ=255) tCCTACACGCTGGAGATCGTGCCCAACAGCGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACTCAc > 2:2672969/1‑150 (MQ=255) ccTACACGCTGGAGACCGGGCCCACCAGCGTGGTAACGGACCAGAACATGGTGGTGGGGACCTGCGTTGGCGGGACGAAGATTATCATCTATCATAAGAACGATCGATACGATTCTGGGCCCGGGGGTGCGAAGCAGCCCCACACTCACg < 2:2612320/150‑1 (MQ=255) ggtgtagaTCGTGCCCAACCGCGAGGTCAAGGACCATAACTTGGGGGTCGGGACCTGGTAGGGGGGGACTAAGAAGATCATCTATCAGAAGAACTATCGATAAGAATCCGGGCCGGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCa < 2:3149405/145‑1 (MQ=255) cTGGAGATCGTGCCCAACAGCGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAg > 2:38881/1‑150 (MQ=255) tGGAGATCGTGCCCAACAGCGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACACACGGGGTGCAGa > 1:2595890/1‑150 (MQ=255) ggAGATGGGGCCCACCCGCGCGGCCACGCACCAGAACTGGGTGGTGGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCCGAAGAACGAGCGATACGCACCCGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGaa < 2:5893906/150‑1 (MQ=255) ggAGATCGTGCCCAACAGCGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGaa > 2:6527211/1‑150 (MQ=255) ggAGATCGTGCCCAACAGCGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGaa > 1:6352932/1‑150 (MQ=255) tGCCCAACAGCGTGGTCAAGGACCATAACTTTGTCGTCGGGACCTGCTTTGGCGGGACGAATATGATCATCTATCAGAATAACTATCGATAAGCATCAGGGCCCGGGGCTGCTAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGc < 1:8050597/150‑1 (MQ=255) tGCCCAACAGCGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGGTGCAGAACACTTCGc > 2:1590232/1‑150 (MQ=255) tGCCCAACAGCGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACACACGGGATGCAGAACACTTAGc > 1:4321252/1‑150 (MQ=255) cAACAGCGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAgg > 2:1679027/1‑150 (MQ=255) cAACAGCGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACAAACACGGGATGCAGAACACTTCGCTAgg > 1:4882853/1‑150 (MQ=255) aGCGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGc < 2:666293/147‑1 (MQ=255) gCGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGt > 2:7638621/1‑150 (MQ=255) gCGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGt > 2:6178887/1‑150 (MQ=255) gCGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACAAACCGGATGCAGAAAACATAGCTAGGCGCGt > 1:7677219/1‑150 (MQ=255) cGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGtt > 2:7024968/1‑150 (MQ=255) cGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGtt > 2:5793651/1‑150 (MQ=255) aaGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCGGCGAAGCACCCCCACACACACCGGATGCAGAAAAAAAAGCTAGGCGCCTTcaccacc > 1:857657/1‑150 (MQ=255) ctgAACTTGGTCGTCGGGACCTGCTTTGGCGGGACGAATAAGATCATCTATCAGAAGAACGATCGATAAGCATCTGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTg < 2:4094342/148‑1 (MQ=255) cAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTg > 2:4425211/1‑150 (MQ=255) acaaCATGTTCGTCGGGACCTGCGTTGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGc < 2:1793361/148‑1 (MQ=255) gAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCCGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCg < 1:7842881/150‑1 (MQ=255) gAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAag < 1:2373503/91‑1 (MQ=255) gAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACACACGGGATGCAGAACACGTCGCTAGGCTCGGTCACCACCACCGTGCg > 1:1230939/1‑150 (MQ=255) acttGGTCTTGGGGACCTGCTTGGGGGGCACTACGAAGAACATCTACCAGAAGAACTACCGATACGCACCCGGGCCCGGGGCTGGGACGCCGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGt < 1:1779762/147‑1 (MQ=255) aCATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGt < 2:3501842/150‑1 (MQ=255) ggTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACGCACGGGCTGCAGAACACTTCGCTAGGCTCGTGCTCCACCACCGTGCGGGTGGc > 2:6601000/1‑150 (MQ=255) gtcgtcGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCg > 1:7926107/1‑150 (MQ=255) gtcgtcGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCg > 2:3593503/1‑150 (MQ=255) tcgtggGGACCTGGTTTGGGGGTACTAAGACTATCATCTATCATAAGAACTATCTATACGCACCTGGGCCGGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGt < 1:7435099/150‑1 (MQ=255) tcgtcgGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCGGCGAAGCAGCCCCACACACACGGGATGCAGAAAACATAGCAAGGCTAGTTAAACACCACCATGCGGTTTGCgg > 1:3955660/1‑149 (MQ=255) tcgGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCat > 1:5720281/1‑150 (MQ=255) gggACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGCAGCAGCCCCACACTCACGGGATGCAGAACACGTCGCTAGGCTCGTTCACCACCACCTTGCGGGTGGCGTCatat > 2:2073828/1‑150 (MQ=255) aCCTGGGTTGGCGGGACGAAGATGATAATCTATCCGAAGAACGATCTATAAGAATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCATATagc < 2:4122816/150‑1 (MQ=255) ccTGCTTTGGCGGTACTAATAATATAATATATCATAATAACTATCTATAAGAATCTGGGCCGGGGGCTGCTACGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCATATagca < 1:2672184/150‑1 (MQ=255) ccTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGGGGCGGAGCAGCCCCCCACACACCGGGTGCAGAAAACATCGCGAGGGGCGTTGACCCACACCGGTCGGGTTGGGTGATATagca > 1:113093/1‑150 (MQ=255) cTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACACACGGGATGCAGAACACTAAGCAAGGCTAGTTCACCACCACCTTGCGGTTGGCGTCATATagcag > 2:4829279/1‑150 (MQ=255) tGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCCGCCCCACACGCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCGTGCGGTTGGCGTCATATagcagc > 2:2947853/1‑150 (MQ=255) gATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCATATAGCAGCAcc > 2:5996272/1‑150 (MQ=255) gATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCGGCGAACCAGCCCCCCACAAACGGGAAGCAAAAAACAAAGCGAGGCGCGGTCAACACCCCCAAACGGGTTGGGGCATAAAGCaccacc > 1:8312135/1‑150 (MQ=255) gCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCGTGCGGTTGGCGTCATATAGCAGCACCTGCg > 2:2192260/1‑150 (MQ=255) gggACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCATATAGCAGCACCTGCGGc < 2:7959857/150‑1 (MQ=255) aggaagacGATCATCTATCAGACGACCGATCGATACGCATCCGGGCCGGGGGGTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCATATAGCAGCACCTGCGGCTcc < 1:896019/148‑1 (MQ=255) atatcatcTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCATATAGCAGCACCTGCGGCTCCATCACCg < 2:1147077/148‑1 (MQ=255) tATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCCGCCCCACACTCACGGGATGCAGAACACTTCCCTAGCCTCCTTCACCACCACCGAGCGGTTGGCGTCATATAGCAGCACCAGCCGCTCCATCACCCGCGccccc > 2:8418907/1‑148 (MQ=255) tATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCATATAGCAGCACCTGCGGCTCCATCACCGGCGCCcgc > 1:7249024/1‑150 (MQ=255) tCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACACACCGGATGCAGAAAACATAGCTAGGCTCGTTCAACACCACCATGCGGTTGGCGGCATATAGCAGCACCAGCGGCTCCAACACCCGCGccccccc > 1:7806850/1‑146 (MQ=255) tCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCGGCGAAGCAGCCCCACACTCACGGGATTCAGAAAAAATCGCAAGGCTCGTTCACCACCACCATTCGGTTGGCGGCATATAGCAGCACCTGCGGCTCCCTCACccgcgcccgcgc > 2:8093153/1‑150 (MQ=255) tCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCGGCGAAGCAGCCCCACACGCACGGGATGCAGAAAACTTCGCTAGGGGCGGTACCCCCCCCCATGCGGGTGGCGGCATATAGCAGCACCGGCGGCTCCATCACCCGCGCCCccgc > 1:469425/1‑150 (MQ=255) agaagaACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCATATAGCAGCACCTGCGGCTCCATCACCGGCGCCCGCGCtt > 2:4040969/1‑150 (MQ=255) gaagaaCGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCATATAGCAGCACCTGCGGCTCCATCACCGGCGCCCGCGCTTc > 2:7322823/1‑150 (MQ=255) gaagaaCGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCATATAGCAGCACCTGCGGCTCCATCACCGGCGCCCGCGCTTc > 2:7792630/1‑150 (MQ=255) aCGATCGATAAGCATCCGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCATATAGCAGCACCTGCGGCTCCATCACCGGCGCCCGCGCTTCCAGGc < 2:5503143/150‑1 (MQ=255) aCGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCATGCGGTTGGCGTCATATAGCAGCACCTGCGGCTCCATCACCGGCGCCCGCGCGTCCAGGc > 2:3289289/1‑150 (MQ=255) atcgatAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCATATAGCAGCACCTGCGGCTCCATCACCGGCGCCCGCGCTTCCAGGCGAt < 2:6127566/150‑1 (MQ=255) tcgatACGAATCCGGGCCGGGGGCTGCCAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCATATAGCAGCACCTGCGGCTCCATCACCGGCGCCCGCGCTTCCAGGCGATa < 1:2940814/150‑1 (MQ=255) tcgatAAGCATCCGGGCCCGGGGCGGCGACGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCATATAGCAGCACCTGCGGCTCCATCACCGGCGCCCGCGCTTCCAGGCGATa < 1:6840058/150‑1 (MQ=255) cgatAAGCATCTGGGCCGGGGGCTGCGACGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCATATAGCAGCACCTGCGGCTCCATCACCGGCGCCCGCGCTTCCAGGCGATAg < 1:845957/150‑1 (MQ=255) atAAGCATCCGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACATCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCAGATAGCAGCACCGGCGGCTCCATCACCGGCGCCCGCGCTTCCAGGCGATAgcg > 2:3473316/1‑150 (MQ=255) tAAGCATCAGGGCCCGGGGCTGCGTAGCAGCCCCACACACACGGGATTCAGAAAACTTCGCTAGGCTCGTTCAACACCACCGTGCGGTTTGCGTCATATAGCAGCACCAGCGGCTCCAACACCCGCGCCCGCGCGTCCAGGCGATAgcgc > 2:433420/1‑150 (MQ=255) tAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCGTGCGGTTGGCGTCATATAGCAGCACCTGCGGCTCCATCACCGGCGCCCGCGCTTCCAGGCGATAgcgc > 1:5813129/1‑150 (MQ=255) tAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACACACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCATATAGCAGCACCTGCGGCTCCATCACCGGCGCCCGCGCTTCCAGGCGATAgcgc > 2:3218119/1‑150 (MQ=255) cATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCATATAGCAGCACCTGCGGCTCCATCACCGGCGCCCGCGCTTCCAGGCGATAGCGCTCGc < 2:8658210/150‑1 (MQ=255) aTCCGGGCCGGGGGCTGCGACGCACCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCATATAGCAGCACCTGCGGCTCCATCACCGGCGCCCGCGCTTCCAGGCGATAGCGCTCGcc < 1:159002/150‑1 (MQ=255) aTCAGGGCCGGGGGCTGCCACGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCATATAGCAGCACCTGCGGCTCCATCACCGGCGCCCGCGCTTCCAGGCGATAGCGCTCGcc < 1:3720083/150‑1 (MQ=255) aGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCATATAGCAGCACCTGCGGCTCCATCACCGGCGCCCGCGCTTCCAGGCGATAGCGCTCGCCGGc < 2:7232242/150‑1 (MQ=255) ggCCGGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCATATAGCAGCACCTGCGGCTCCATCACCGGCGCCCGCGCTTCCAGGCGATAGCGCTCGCCGGCCt < 1:3233352/150‑1 (MQ=255) ggCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCATATAGCAGCACCTGCGGCTCCATCACCGGCGCCCGCGCTTCCAGGCGATAGCGCTCGCCGGCCt < 1:4357018/150‑1 (MQ=255) tgtggggCTGCTTCGCAGCCCCGCACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCata < 2:8560295/83‑1 (MQ=38) tgtggggCTGCTTCGCAGCCCCGCACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCATATAGCAGCACCTGCGGCTCCATCACCGGCGCCCGCGCTTCCAGGCGATAGCGCTCGCCGGCCTTg > 1:2037392/4‑150 (MQ=255) ccGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACCCTTCGCGAGGCTCGGTCACCACCACCTTGCGGTTGGCGTCATATAGCAGCACCTGCGGCTCCATCACCGGCGCCCGCGCTTCCAGGCGATAGCGCTCGCCGGCCTTGa < 2:4971920/150‑1 (MQ=255) ccGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCATATAGCAGCACCTGCGGCTCCATCACCGGCGCCCGCGCTTCCAGGCGATAGCGCTCGCCGGCCTTGa < 2:2829702/150‑1 (MQ=255) ccGGGGCTCCGACGCCGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCATATAGCAGCACCTGCGGCTCCATCACCGGCGCCCGCGCTTCCAGGCGATAGCGCTCGCCGGCCTTGa < 1:3880288/150‑1 (MQ=255) tggggCTGCTTCGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCATATAGCAGCACCTGCGGCTCCATCACCGGCGCCCGCGCTTCCAGGCGATAGCGCTCGCCGGCCTTGaa > 2:3829997/2‑150 (MQ=255) tggggCTGCTTCGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCATATAGCAGCACCTGCGGCTCCATCACCGGCGCCCGCGCTTCCAGGCGATAGCGCTCGCCGGCCTTGaa > 2:2324171/2‑150 (MQ=255) gggggCTGCGACGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCATATAGCAGCACCTGCGGCTCCATCACCGGCGCCCGCGCTTCCAGGCGATAGCGCTCGCCGGCCTTGaa < 1:2185368/149‑1 (MQ=255) cGGGGCTGCTAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCATATAGCAGCACCTGCGGCTCCATCACCGGCGCCCGCGCTTCCAGGCGATAGCGCTCGCCGGCCTTGaa < 2:1000229/150‑1 (MQ=255) gggCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCATATAGCAGCACCTGCGGCTCCATCACCGGCGCCCGCGCTTCCAGGCGATAGCGCTCGCCGGCCTTGAAGt > 2:5236800/1‑150 (MQ=255) agcagcCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCATATAGCAGCACCTGCGGCTCCATCACCGGCGCCCGCGCTTCCAGGCGATAGCGCTCGCCGGCCTTGAAGTTGTCAAAGc < 2:1486850/150‑1 (MQ=255) | GGCCCAAGGGGTTTCGTCCTACACGCTGGAGATCGTGCCCAACAGCGAGGTCAAGGACCAGAACATGGTCGTCGGGACCTGCGATGGCGGGACGAAGAAGATCATCTATCAGAAGAACGATCGATAAGCATCAGGGCCCGGGGCTGCGAAGCAGCCCCACACTCACGGGATGCAGAACACTTCGCTAGGCTCGTTCACCACCACCTTGCGGTTGGCGTCATATAGCAGCACCTGCGGCTCCATCACCGGCGCCCGCGCTTCCAGGCGATAGCGCTCGCCGGCCTTGAAGTTGTCAAAGC > NC_002947/97445‑97743 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |