| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 955,083 | T→A | 5.5% | intergenic (+34/‑279) | cyoE → / → alaC | protoheme IX farnesyltransferase/aminotransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 955,083 | 0 | T | A | 5.5% | 1441.1 / 48.8 | 454 | intergenic (+34/‑279) | cyoE/alaC | protoheme IX farnesyltransferase/aminotransferase |
| Reads supporting (aligned to +/- strand): ref base T (114/311); new base A (4/21); total (118/336) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.48e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.17e-01 | |||||||||||
Only 100 of 465 total aligned reads displayed.
GCAAGTGGGCCCGCAAGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCT > NC_002947/954934‑955231 | caGTGGGCCCGCAAGGTGTTCGGCTGCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGCCCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACtgn < 1:4946648/149‑2 (MQ=255) gCCCGCAAGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGGAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCggg < 1:4833063/150‑1 (MQ=255) gCCCGCAAGGTGTTCGACTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCggg < 2:7536651/150‑1 (MQ=255) cccGCAAGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCgggg > 1:1834630/1‑150 (MQ=255) ccGCAAGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑t > 2:7189641/1‑150 (MQ=255) ccGCAAGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑t > 1:4653711/1‑150 (MQ=255) ccGCAAGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGG‑CACAGTGGCCGGGG‑‑‑t < 1:5919243/150‑1 (MQ=255) cGCAAGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑tt < 1:7938842/150‑1 (MQ=255) cGCAAGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGG‑CACAGTGGCCGGGG‑‑‑tt < 2:1606619/150‑1 (MQ=255) gCAAGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGG‑CACAGTGGCCGGGG‑‑‑ttt < 2:6070504/150‑1 (MQ=255) aaGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGG‑CACAGTGGCCGGGG‑‑‑ttttc < 2:3571766/150‑2 (MQ=255) tgtTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑ttttttttt > 2:3821820/1‑150 (MQ=255) tgtTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGG‑CACAGTGGCCGGGG‑‑‑ttttcgtga < 2:4570832/150‑6 (MQ=255) tgtTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGG‑CACAGTGGCCGGGG‑‑‑ttttcgtga < 2:1412486/150‑6 (MQ=255) tgtTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGG‑CACAGTGGCCGGGG‑‑‑ttttcgtga < 2:6333152/150‑6 (MQ=255) gtTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTg < 2:6672182/150‑1 (MQ=255) gtTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTg < 2:7954120/150‑1 (MQ=255) gtTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTg < 2:6260005/150‑1 (MQ=255) gtTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTg < 2:6877416/150‑1 (MQ=255) gtTCGGCTTCTCCATCCTCACCGTCACGGCCCTGAGCGTGATGAGGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTg < 2:8182040/150‑1 (MQ=255) ttCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTgg < 2:4321445/150‑1 (MQ=255) ttCGGCTTCTACATCCTCACCGTCACAGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTgg > 1:4159288/1‑150 (MQ=255) gtCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTgg < 1:5360269/149‑1 (MQ=255) tCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGAGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑ATATATTTTggg < 2:5711750/150‑1 (MQ=255) gCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGt < 2:7290951/150‑1 (MQ=255) gCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGt > 2:4138247/1‑150 (MQ=255) gCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGt > 1:6891619/1‑150 (MQ=255) ttCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑AATTTTTTTGGGGGTAt < 2:229844/150‑1 (MQ=255) gTCACTGCCCTGAGCGTGTTGATGGGTGTGGACTGCGAGACCGCTGCGGCTGTGCTGTTGACCTACGCACGCTGAAACTGGTGCCTGTTTCACGAAATGCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TGTTCCTGTGCCggg < 2:6500984/150‑2 (MQ=255) tGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCtt > 2:2833754/1‑150 (MQ=255) gCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTc < 1:3821820/150‑1 (MQ=255) gAGCGTGATGAGGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCggg < 2:4871445/150‑1 (MQ=255) gTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTaaa < 2:7479227/150‑1 (MQ=255) tgatgaTGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCgggggaac > 1:892575/1‑145 (MQ=255) tgatgaTGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAAc < 2:3282308/150‑1 (MQ=255) gatgatGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCggg > 2:6417509/1‑100 (MQ=255) gatgatGGGTGTGGACAGCCAGACCGCTGCGGAGGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGT‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAAc < 2:2593233/150‑1 (MQ=255) tgGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTc < 2:4026639/150‑1 (MQ=255) gggTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTTTACCCGcgaa < 1:6568678/150‑4 (MQ=255) gggTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTcc < 1:1023013/150‑1 (MQ=255) ggTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCACTTCGCGGGTAAACCCGcgaca > 2:1225808/1‑146 (MQ=255) gtgtGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGTTTTTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTc < 1:6384908/150‑1 (MQ=255) gtgtGGACAGCCAGACCGCTGCGGATGTGCTGATGACCCACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTa < 2:8140098/150‑1 (MQ=255) gtgGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACa < 1:7442941/150‑1 (MQ=255) gtgGACAGCCAGACCGCTGCGGATGTGCTGAGGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTTTACCCGcgaagagg < 1:4578832/150‑8 (MQ=255) tgGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACag < 2:2210972/150‑2 (MQ=255) ggACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAg < 2:6603035/150‑1 (MQ=255) aCAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGT‑‑TTTTTTTTTGGGGTTAT‑‑‑‑‑TTTTCCTGTGCCGGCCCGTGCCCGGGTAAACCCGAGCCAACAAgg > 1:8075734/1‑150 (MQ=255) aCAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGCAAACCCGCTCCTACAAGGt > 2:2738402/1‑150 (MQ=255) cAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGtt < 1:6458784/150‑1 (MQ=255) cgCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACGGG‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACaggaacc < 2:5557665/149‑7 (MQ=255) aGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTc < 1:8238716/150‑1 (MQ=255) aGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTc < 2:192739/150‑1 (MQ=255) aGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTc < 1:7763697/150‑1 (MQ=255) ccAGACCGCTGCGGATGTGCTGATGACCTTCGCTCGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCt < 2:4413610/150‑1 (MQ=255) ccAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCt < 2:8602627/150‑1 (MQ=255) aGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCTGGTAAACCCGCTCCTACAAGGTTCCTGt < 1:2376828/150‑1 (MQ=255) aGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGt < 1:3528088/150‑1 (MQ=255) aGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGt < 2:5191334/150‑1 (MQ=255) gACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCtt < 2:3463147/117‑1 (MQ=255) gACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTa < 1:6697649/150‑1 (MQ=255) gCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCt < 2:831353/143‑1 (MQ=255) cTGCGGTTGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGT‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTT‑ATGTGCTGGCCTCTTCGCGGTTAAACCCGCTCCTACAGGAACCTTGTAGGAGCg < 1:2535038/150‑1 (MQ=25) cTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCTTGTAGGAGc < 2:7879332/150‑1 (MQ=38) cTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCTTGTAGGAGc < 1:2668790/150‑1 (MQ=38) cTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCTTGTAGGAGc < 2:505560/150‑1 (MQ=38) cTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAGc < 1:6116315/150‑1 (MQ=255) tGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCTTGTAGGAGCg < 1:7189641/150‑1 (MQ=38) tGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCTTGTAGGAGCg < 1:7580227/150‑1 (MQ=38) gCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑TCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAGCgg < 1:7107253/150‑1 (MQ=255) gCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCTTGTAGGAGCgg < 2:5992223/150‑1 (MQ=38) gCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCTTGTAGGAGCgg < 1:5584584/150‑1 (MQ=38) gCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCTTGTAGGAGCgg < 1:4018328/150‑1 (MQ=38) gCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCTTGTAGGAGCgg < 1:6288793/150‑1 (MQ=38) gCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAGCgg < 1:3339819/150‑1 (MQ=255) gCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAGCgg < 2:7020658/150‑1 (MQ=255) cGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGT‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCTTGTAGGAGCgg < 1:3153873/150‑1 (MQ=37) cGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAGCggg < 2:3034314/150‑1 (MQ=255) cGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAGCggg < 1:989476/150‑1 (MQ=255) cGGATGTGCTGATGACCGACGCACGCTGAAACTGCGGCCTGTTTCACGAAAACCCCGGCCACGGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTCT‑‑‑‑‑TTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCGGAACCTTGTAGGAGCggg < 2:8787656/150‑1 (MQ=25) cGGATGTGCTGAGGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAGCggg < 1:5240126/150‑1 (MQ=255) ggATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGGT‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCTTGTAGGAGCggg < 1:50544/150‑1 (MQ=37) ggATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TATTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAGCGGGt < 1:8510897/150‑1 (MQ=255) gATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGAGGTATTTTTATTTTTCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCTTGTAGGAGc < 1:4354976/150‑1 (MQ=18) tgtgCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAGCGGGTTTa < 2:7795629/150‑1 (MQ=255) gtgCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAGCGGGTTTAc < 2:4469870/150‑1 (MQ=255) ccTACGCACGCTTAAACTGCTGCCTTTTTAACGAAAACCCCGGCCACTGT‑GCCGGGT‑‑‑TTTTTTTTTGGGGTTTT‑‑‑‑‑TTTTCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACATGGTTCCTGTAGGTGGGGTTTTACCCGCGAagag < 2:3702881/150‑1 (MQ=37) cTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCCCGCCTACAAGGTTGCTGGTGGGGGGGGGTTTCCCGCGAAgggg > 1:2105776/1‑150 (MQ=255) cgcacgcTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGGAAAACCGCTCCGACAAGGGTCGGGGAGGGGCGGGGTTAACCGCGGAGAgggcc > 1:1306187/1‑147 (MQ=255) gcacgcTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTGAACCCCCGCCGAACAGGTTCCTGTAGGGGCGGGTGTGCCCCCGGAGAgggccg > 1:5630536/1‑146 (MQ=255) gcTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTTAACCCGCTCCTACAGGAACCTTGTTGGAGCggg < 1:1729125/126‑1 (MQ=25) gcTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGAACCTTGTAGGAGCggg > 2:1729125/1‑126 (MQ=25) cctgcggCCTGTGACACGAAAACCCCGGCCCCGGG‑GCGGGGT‑‑‑TTTTTTTTTGGGGGTTT‑‑‑‑‑TTTACCTGGGCCGGCAACTCCGCGGGTAAACCCGCTCCTACACGGTTCCTGTCGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGaaaaa < 1:3633301/149‑1 (MQ=21) aCTGCTGCCTGTGACACGAACACCCCGGCCACTGT‑GCCGGGG‑‑‑TATTTTTTGGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAACCCCGCTCCTACAAGGTTCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGaaaaa < 2:5390547/150‑1 (MQ=37) tttCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTc < 2:5630411/96‑1 (MQ=255) aaaaCCCCGG‑CACAGTGGCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTGCGGGGGGGGCGGGGTTAACCGCGGAGTGGCCCCCACAGAAAAATAAAAATACCTGATTTTc > 1:8683453/1‑150 (MQ=25) aaCCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTTAAACCGCTCCTACAAGGTTCCGGTTGGAGCGGGGTTACCCGCGGAGAGGCCAGCACAGCAAAATAAAAATAACGGGTTTTGaa > 2:4753093/1‑150 (MQ=38) aCCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCaaa > 2:6518240/1‑150 (MQ=255) ccccGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTGAAACCCCGCCTAAAAAGTTACTGTAGGATCGGGTTTTACCCCGAAGTGGCCCGCACACAAAAATAAAAAAAACAGATTTTAaaaa > 1:2893529/1‑150 (MQ=255) ccGGCCACTGG‑GCCGGGC‑‑‑TTTTATTTTGGGGGTAT‑‑‑‑‑TTTTCCGGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCaaaaaa < 2:8552955/150‑1 (MQ=255) | GCAAGTGGGCCCGCAAGGTGTTCGGCTTCTCCATCCTCACCGTCACTGCCCTGAGCGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGT‑GCCGGGG‑‑‑TTTTTTTTTGGGGGTAT‑‑‑‑‑TTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCT > NC_002947/954934‑955231 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |