| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,316,690 | C→A | 7.0% | intergenic (‑203/+75) | PP_1144 ← / ← rapA | membrane protein/RNA polymerase‑associated protein RapA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,316,690 | 0 | C | A | 7.0% | 1338.3 / 14.7 | 453 | intergenic (‑203/+75) | PP_1144/rapA | membrane protein/RNA polymerase‑associated protein RapA |
| Reads supporting (aligned to +/- strand): ref base C (145/256); new base A (46/3); total (194/259) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.12e-15 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 459 total aligned reads displayed.
TGTCCAGAGGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGC > NC_002947/1316541‑1316838 | tGTCCAGAGGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATc < 1:167538/150‑1 (MQ=255)tGTCCAGAGGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATc < 2:8500945/150‑1 (MQ=255) tCCAGAGGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCa < 2:8337270/150‑1 (MQ=255) tCCAGAGGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCa > 2:6274690/1‑150 (MQ=255) ccAGAGGCATTTTAGTAAGGAGTTCTTAAGCCTTCCTGACTATTGTCACATTGATTTCTACGTTTTGTTTATAACTCCAATCGCAGTGAGGAATAATTTTGGGGCCCTAAGGCCTTCCTGTGGGTGCGGGCGAGCCCGCGAAGCATCCAc < 1:6256598/150‑1 (MQ=255) cAGAGGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACt < 1:6051987/150‑1 (MQ=255) agagGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTg < 2:2017797/150‑1 (MQ=255) ggCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTATTGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAATTTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCgg < 1:3181516/150‑1 (MQ=255) gCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTCCGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGt < 1:1753164/150‑1 (MQ=255) cAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTg < 1:3349143/150‑1 (MQ=255) gTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGa < 2:2635828/150‑1 (MQ=255) gTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGa < 2:2713213/150‑1 (MQ=255) gTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGa < 2:7356720/150‑1 (MQ=255) taGGAAGGAGTACTTAAGCCTTCCTGACTAATGGAACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACCGCAGTGGATGc < 1:284905/150‑1 (MQ=255) taGGAAGGAGTACTTAAGCCATCCTGACTAATGGCACAATGAGTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGCAATAAATGTGGGGCCCTCATGCCTACCTGTGGGAGCGGGCGAGCCCCCGCAGCACCCCCGGCGGTggcggc > 2:5218312/1‑146 (MQ=255) ggaaggaGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTTATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACCGCAGTGGATGctt < 2:7005659/150‑3 (MQ=255) ggaaggaGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCa > 2:5984094/1‑150 (MQ=255) gaaggaGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCGCAGCAACCACAGCGGGGGATGCCAc > 1:7239244/1‑150 (MQ=255) gaaggaGTACTTAAGCCTTCCTAACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGGCCGCGCAGCATCCACGGCGGGGGGTGCCAc > 2:3870083/1‑150 (MQ=255) ttAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGGAGCCTCCCCGGCGGGGGATGCCACCGGCG‑TTGcc > 2:7871121/1‑150 (MQ=255) ttAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCCCAGCAACCACCGCGGTGGGTGCCCCCGGCG‑GTGcc > 2:3758613/1‑150 (MQ=255) ttAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCAAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGACGCCACCGGCT‑TTGcc > 2:3517481/1‑150 (MQ=255) ttAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTGGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGcc < 1:2674592/150‑1 (MQ=255) tAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCg < 2:8804717/150‑1 (MQ=255) tAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCg < 2:6111207/150‑1 (MQ=255) tAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCg < 2:3412195/150‑1 (MQ=255) tAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCg < 1:8052387/150‑1 (MQ=255) aaGCCTTCCTGACTAATTGAAAAATGATTTCTACTATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGCGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCgg < 1:4126456/150‑1 (MQ=255) aaGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGGCCGCGAAGCATGCACTTCGGTGGTTTGCACCGGCT‑TTGGCgg > 2:6733404/1‑150 (MQ=255) aGCCTTCCTGACTAATGGCACAATGATTTCTACGTTTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGgt < 1:6818957/150‑1 (MQ=255) gCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCGAAGCATCCACGGCGGTGGCTGCCACCGGCG‑TTGCCgggg > 2:5325995/1‑148 (MQ=255) ccttccttACTAATGGCACAATGATTTCTACGATTTGGTTATCACTCCATTCGCTTTGAGTAATAATTTTGGGTCCCTAATGCCTTCCTGTGGTAGCGGGCGAGCCCGCGAAGCATCCACTGCGTTGGATGCCACCGGCT‑TTGCCGgtgt < 1:1007003/150‑1 (MQ=38) ccTTCCTGACTAATGGCACAATGATTTCTCCGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGgtgt < 1:8601889/150‑1 (MQ=255) ccTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGGCCGCGCGGCCTCCCCGGCGGGGGATGGCCCCCGCG‑TGGCCGgtgt > 2:8257014/1‑150 (MQ=255) ccTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGgtgt < 2:1113794/150‑1 (MQ=255) ttCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTc < 2:7230750/150‑1 (MQ=255) cTGACTAATGGCACAATTTTTTCTACTATTTGGTTATAACTCCAATCGCAGTGAGGAATAATTTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTcgcg < 1:6629128/150‑1 (MQ=255) cTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCAAACACAGCGGGGGATGCCACCGGCG‑TTGCCGGTGTTcgcg > 2:8150766/1‑150 (MQ=255) cTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCGAAACATACACAGAGGTGGAATCCAACCCCG‑TTGCCCGTGTTagcg > 2:189067/1‑150 (MQ=255) tGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGGCCGCGGAGCAACCACAGGCGGGGGTGGCACCCGCG‑TTGGCGGTGTTCGCgg > 1:5703780/1‑150 (MQ=255) tGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCCCACCAACCACAGCCGGGGATGCCACCCGCG‑TTGCCGGGGTTCGCgg > 2:3205675/1‑150 (MQ=255) aatAATGGCAATTTGATTTCTAAGATTTGGTTATAACTCCACTCGCTTTGAGTAATAAATTTGGGGCCCTATTGCCTTCCTTTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGc < 1:2191354/148‑1 (MQ=25) tAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCAACCACAGCGGGGGGTGCCACCGGCG‑TTGCCGGTGTTAGCGGGCGt > 1:6561972/1‑150 (MQ=255) aTGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCA‑TTGCCGGTGTTAGCGGGCGTgc < 2:4300127‑M2/150‑3 (MQ=255) aTGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCGAAGCAACCCCAGCGGGGGGAGCCACCCGCGGTTGCCGG‑GTTGGCGGGGGTgc < 2:453262‑M2/150‑3 (MQ=255) acaATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCGAAGCAAACAAAGCGGTGGATTCCACCCGCA‑TTGCCCGTGTTCGCCGGCCGGccccca > 1:8815625/1‑147 (MQ=255) caATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCGAAGCAAAAACAGCGGTGGATTCCAACCGCG‑TTTGCGGTGTTAGCGGGCGTgcccccac < 2:1782402‑M2/150‑9 (MQ=255) aaTGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGCAGCATCCACTGCGGTGGCTGCCACCGGCG‑TTGCCGGGGTTCGCGGGCGGgcccgcgcc < 2:5640963‑M2/150‑10 (MQ=255) aTGATTTCTACGATTTGTTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTgcccgctccc > 1:3545798‑M2/1‑140 (MQ=255) tGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGGGGATGCCACCGGCG‑TTGCCGGTGTTCGCGGGCGTgcccgctcccc < 2:1387435‑M2/150‑12 (MQ=255) aTTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCGAAGCAACCACAGCGGGGGGTGCCCCCCGCG‑TTTCCGGGGTTAGCGGGCGGgcccccacccaca < 1:1447521‑M2/150‑14 (MQ=255) tttCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACaa < 2:7660231/150‑1 (MQ=255) tACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGCAGCATACACGGCGGGGGGTGCCACCCGCG‑TTGCCCGGGGTTGCGGGCGTGGCCGCACCCCCCAgggg > 1:2584223/1‑150 (MQ=255) tACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAgggg > 2:7966598/1‑150 (MQ=255) gATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGgcgc < 2:1566927/150‑1 (MQ=255) gATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGgcgc < 1:4987184/150‑1 (MQ=255) tttGGTTATACCTCCAATCGCAGTGTTGAATAATTTTGGGGGCCTACTGCGTTGGTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCgg < 1:4803488/150‑1 (MQ=25) tttGGTCATAACTCCACTCGCCGTGAGGAATAAATTTGGGGCCCTCCGGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCgg < 1:1916524/150‑1 (MQ=37) ttgggTTATAACGCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCgg < 2:8662755/147‑1 (MQ=255) ggTTATACCTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGc < 2:7759930/150‑1 (MQ=255) ggTTAGACCGCCAATCGCAGGGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGGGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGc < 1:6974024/150‑1 (MQ=37) atcaccccAATCGCAGTGAGGAATAAATTGGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTgc < 1:4241073/144‑1 (MQ=255) ataACTCCAATCGCCGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGGGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTgc < 1:8211331/150‑1 (MQ=255) aCTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCt < 2:232875/150‑1 (MQ=255) cTCCACTCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTa < 2:2529795/150‑1 (MQ=255) tCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGGCCGCGAAGCATACACTGCGGTGGATGGCGCCGGGT‑TTTGGGGTGTTGGCGGGGGTGGCCGCTCCCCAAAAGGGGGCGGGGGCAGCGCTag > 2:7086689/1‑150 (MQ=255) tCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGGCCCCCCAACAAACAAAGCGGTGGTTGGCCCCCGCC‑GTTCCGGGGTTGGGGGGCGGGGCCCCTCCCACCAAGGGGGCGGGGGCGGCGCGag > 2:1001572/1‑150 (MQ=255) cAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGGCCCCGGAGCCAAAACTGCGGTGGGTGCCACCCGCG‑TTTGCGGTGTTGGCGGGCGGGCCCCCGCCCACCACGGGGGCGGGGGCGGCGCTagcc > 2:3019132/1‑150 (MQ=255) aTCGCTTTGTGGAATAATTGGGGGGCCCTAAGGCCTGCGGGTGGGCGGGGGCGCCCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTagccag < 1:4452290/150‑1 (MQ=25) aTCGCTGTTAGTAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGGGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGAGCGCAGGCCCCgcgccccttgt < 1:2494341/150‑8 (MQ=25) aTCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGAGCGCAGGCCCCgcgccccttgt < 2:2912865/150‑8 (MQ=25) cAGTGAGGAATAAATTTGGGGCCCTACTGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGccac < 1:577769/150‑1 (MQ=255) aaTTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGGGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAAt < 2:5796879/150‑1 (MQ=255) ttGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGc < 2:6582133/150‑1 (MQ=255) ggggCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGCAGCATCCCCAGCGGTGGCTGCCACCCGCT‑TTGCCGGGGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCGAGCCAGCCACCAGCCCCCGCAAGGCtt > 2:7813858/1‑150 (MQ=37) ttCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGggcg < 1:3854479/150‑1 (MQ=255) cTGTGGGCGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGcc < 2:2759941/150‑1 (MQ=255) cTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGcc < 1:371413/150‑1 (MQ=255) ggAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTtctc < 2:1212705/150‑1 (MQ=255) gAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTcc < 2:1684257/150‑1 (MQ=255) gCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACCAGGGGCGCGGGGCCTGCGCGAGCCAGCCCCCAGCACCCGACTGGCTTCCGGGCGCAGGGCGGCCTTCTcccc > 2:643998/1‑148 (MQ=37) ggCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTgcccgctcccccaggaaggccttagggcccccaaggtattcctcacggcgattggagtgataacccaatcggagaaatcattgtgcca < 2:4855137‑M2/150‑89 (MQ=255) gCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTgcccgctcccacaggaaggcattagg < 1:529434‑M2/87‑27 (MQ=255) gCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCTCgcccgctcccacaggaaggcattagggccccaaatttattcctcactgcgattggagttataaccaaaaagtagaaatcattgtgccattagt < 1:755938‑M2/150‑94 (MQ=255) cccGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAg < 2:2881610/150‑1 (MQ=255) ccGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAgg > 2:4191183/1‑150 (MQ=255) ccggtaGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGc > 2:2568303/6‑150 (MQ=255) gcgAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCTCgcccgctcccaccggaaggcagtagggccccaaatttattcctcactgcgattggaggtataaccaactcgtagaaatccttgtgccagtagtcagg < 2:499591‑M2/150‑98 (MQ=255) gcgAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGcc > 1:7942062/1‑150 (MQ=255) gcgAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGcc > 1:7372909/1‑150 (MQ=255) gcgAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGcc > 2:5531587/1‑150 (MQ=255) cgAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTgcccgctcccacaggaag > 2:3564052‑M2/1‑52 (MQ=255) gAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCAt < 2:3933708/150‑1 (MQ=255) tggCATCCACCGCAGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATc > 2:5044772/3‑150 (MQ=255) gCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCtt < 1:5053279/150‑1 (MQ=255) aTCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcg > 2:2075685/1‑150 (MQ=255) aTCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcg > 1:2068691/1‑150 (MQ=255) tCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTgcccgctcccacaaggggcgcggggccccaaatttattcctcactgcgattggagttataaccaaatcgtagaaatcattgtgccattagtcaggaaggcttaag < 2:4715054‑M2/150‑106 (MQ=255) tCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcgc > 2:3670911/1‑150 (MQ=255) tCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcgc > 1:1088880/1‑150 (MQ=255) | TGTCCAGAGGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGC > NC_002947/1316541‑1316838 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |