| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,316,694 | T→A | 15.7% | intergenic (‑207/+71) | PP_1144 ← / ← rapA | membrane protein/RNA polymerase‑associated protein RapA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,316,694 | 0 | T | A | 15.7% | 1072.6 / 67.8 | 457 | intergenic (‑207/+71) | PP_1144/rapA | membrane protein/RNA polymerase‑associated protein RapA |
| Reads supporting (aligned to +/- strand): ref base T (116/234); new base A (67/9); total (202/255) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.09e-19 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 465 total aligned reads displayed.
CAGAGGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGC > NC_002947/1316545‑1316843 | agagGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTg < 2:2017797/150‑1 (MQ=255) ggCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTATTGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAATTTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCgg < 1:3181516/150‑1 (MQ=255) cAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTACTGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTg < 1:3826847/150‑1 (MQ=255) tataGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGAt < 2:2891336/150‑1 (MQ=255) tataGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGAt < 2:8498649/150‑1 (MQ=255) tataGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAAGGCCTGCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGAt < 1:5356921/150‑1 (MQ=255) taGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACCGCAGTGGATG‑c < 1:5033407/150‑1 (MQ=255) taGGAAGGAGTACTTAAGCCATCCTGACTAATGGCACAATGAGTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGCAATAAATGTGGGGCCCTCATGCCTACCTGTGGGAGCGGGCGAGCCCCCGCAGCACCCCCGGCGGTggcggc > 2:5218312/1‑146 (MQ=255) aggaaggaGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑cc > 2:5769365/1‑150 (MQ=255) ggaaggaGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAACTTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCa < 1:6263381/150‑1 (MQ=255) ggaaggaGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCa > 2:3648083/1‑150 (MQ=255) ggaaggaGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCa > 2:5984094/1‑150 (MQ=255) gaaggaGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCAc < 1:5102531/150‑1 (MQ=255) aggaGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGTTTATAACTCCAATCGGAGTGAGTAATAAATTTGGGGCCATATTGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCg < 1:4443823/150‑1 (MQ=255) ggaGTACTTAATCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATACACAGCGGTGGATG‑Ccccccg > 2:4457573/1‑148 (MQ=255) ggaGTACTTAAGCCTTCCTGACTATGGGCACAATGATTTCTACGATTTGGTTATCACTCCAATCGCAGTGAGGAATAACTTTGGGGCCCTACTGCCTTCCTGTGGGCGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCgg < 1:4867878/150‑1 (MQ=255) cTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGc < 2:2638074/150‑1 (MQ=255) ttAAGCCTTCCTGACTAATGGCACAATTATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGCGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGcc < 1:6029774/150‑1 (MQ=255) ttAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAACTTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGcc < 1:2675047/150‑1 (MQ=255) ttAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCCCAGCAAACACAGCGGGGGATG‑CCACCCGCGTTTcc > 1:691669/1‑150 (MQ=255) ttAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCCCAGCAACCACCGCGGTGGGTG‑CCCCCGGCGGTGcc > 2:3758613/1‑150 (MQ=255) ttAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCAAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGACG‑CCACCGGCTTTGcc > 2:3517481/1‑150 (MQ=255) ttAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTACAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATACACAGCGGTGGGTG‑CCCCCCGCGTTGcc > 2:7399002/1‑150 (MQ=255) tAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCg < 2:8804717/150‑1 (MQ=255) tAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCg < 2:6601490/150‑1 (MQ=255) gCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGTAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGCGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGgtg < 1:4024563/150‑1 (MQ=255) gCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGACTAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGCAGCATCCACGGCGGGGGGTG‑CCACCGGCTGTGCCGgtg > 2:7790769/1‑150 (MQ=255) gCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTCAGGCCTTCCGGTGGGCGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGgtg < 1:4231099/150‑1 (MQ=255) gCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCGAAGCATCCACGGCGGTGGCTG‑CCACCGGCGTTGCCgggg > 2:5325995/1‑148 (MQ=255) ccttccttACTAATGGCACAATGATTTCTACGATTTGGTTATCACTCCATTCGCTTTGAGTAATAATTTTGGGTCCCTAATGCCTTCCTGTGGTAGCGGGCGAGCCCGCGAAGCATCCACTGCGTTGGATG‑CCACCGGCTTTGCCGgtgt < 1:1007003/150‑1 (MQ=38) ccTTCCTGACTAATGGCACAATGATTTCTCCGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGgtgt < 1:8601889/150‑1 (MQ=255) ccTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGGCCGCGCGGCCTCCCCGGCGGGGGATG‑GCCCCCGCGTGGCCGgtgt > 2:8257014/1‑150 (MQ=255) ccTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGgtgt < 2:1113794/150‑1 (MQ=255) ccTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGgggt > 2:7679659/1‑150 (MQ=255) ttCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAATTTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCAAAGCCGgtggca < 2:4838462/150‑4 (MQ=255) ttCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCCCTGCGGTGGATG‑CCACCGGCGTTGCCGGTGTTc > 2:5034907/1‑150 (MQ=255) cTGACTAATGGCACAATTTTTTCTACTATTTGGTTATAACTCCAATCGCAGTGAGGAATAATTTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTcgcg < 1:6629128/150‑1 (MQ=255) cTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCAAACACAGCGGGGGATG‑CCACCGGCGTTGCCGGTGTTcgcg > 2:8150766/1‑150 (MQ=255) cTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCGAAACATACACAGAGGTGGAAT‑CCAACCCCGTTGCCCGTGTTagcg > 2:189067/1‑150 (MQ=255) tGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGGCCGCGGAGCAACCACAGGCGGGGGTG‑GCACCCGCGTTGGCGGTGTTCGCgg > 1:5703780/1‑150 (MQ=255) aatAATGGCAATTTGATTTCTAAGATTTGGTTATAACTCCACTCGCTTTGAGTAATAAATTTGGGGCCCTATTGCCTTCCTTTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGc < 1:2191354/148‑1 (MQ=25) aCTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGc < 2:2721992/150‑1 (MQ=255) tAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGCAGCAAACACAACGGGGGGTGCCCACCCCGTTTGCCGG‑GTTCGCgggggg > 1:7794672/1‑147 (MQ=255) tAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCAACCACAGCGGGGGGTG‑CCACCGGCGTTGCCGGTGTTAGCGGGCGt > 1:6561972/1‑150 (MQ=255) aTGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTgc > 2:7282154‑M2/1‑148 (MQ=255) ggCACAATGATTTCTACGATTGGGTTATAACTCCACGCGCAGTGCGGAATAAATTTGGGGCCCTACGGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTgccc > 1:1736134‑M2/1‑146 (MQ=255) gCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCGAAGCAACCACTGCGGGGGGTG‑CCACCCGCATTGCCGGTGTTCGCGGGCCTgcccg < 2:7008519‑M2/150‑6 (MQ=255) acaATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCCAAGCATCCCCTGCGGTGGGTG‑GCCCCGGGGTTGCCGGGGTTAGCGGGCGTgcccgcg < 2:3222867‑M2/150‑8 (MQ=255) acaATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCGAAGCAAACAAAGCGGTGGATT‑CCACCCGCATTGCCCGTGTTCGCCGGCCGGccccca > 1:8815625/1‑147 (MQ=255) caATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCCCAGCAACCACAGCGGTGGTAG‑CCCCCCCCGTTGGCGGTGTTGGCGGGCGTgccccctc < 2:1782389‑M2/150‑9 (MQ=255) aaTGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCCAAACAACCACAGCGGGGGCTG‑CCACCCGCGTTTCCGGTGTTCGCGGGCGGgcccgcacc < 2:2936529‑M2/150‑10 (MQ=255) aTGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGACTAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCGAAGCAACCACTGCCGTGGATG‑CCACCCGCTATTCCCGTGTTCGCGGGCGTgcccccaccc < 2:8029592‑M2/150‑11 (MQ=255) tGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTACTGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTgcccgctccca > 2:3825522‑M2/1‑139 (MQ=255) tGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGGGGATG‑CCACCGGCGTTGCCGGTGTTCGCGGGCGTgcccgctcccc < 2:1387435‑M2/150‑12 (MQ=255) aTTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCGAAGCAACCACAGCGGGGGGTG‑CCCCCCGCGTTTCCGGGGTTAGCGGGCGGgcccccacccaca < 1:1447521‑M2/150‑14 (MQ=255) tACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGCAGCATACACGGCGGGGGGTG‑CCACCCGCGTTGCCCGGGGTTGCGGGCGTGGCCGCACCCCCCAgggg > 1:2584223/1‑150 (MQ=255) gATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGgcgc < 2:1566927/150‑1 (MQ=255) aTTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCCGCTTTGCCGGTGTTCGCGGGCGTGCCCGCACCCCCAAGGGGcgcg > 2:3559713/1‑150 (MQ=255) aTTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACAGCGGTGGATG‑CCACCGGCGTTTCCCGGGTTAGCGGGCGTGCCCGCTCCCACAAGGGGcgcg > 2:2797468/1‑150 (MQ=38) tttGGTTATACCTCCAATCGCAGTGTTGAATAATTTTGGGGGCCTACTGCGTTGGTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCgg < 1:4803488/150‑1 (MQ=25) ttgggTTATAACGCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCgg < 2:8662755/147‑1 (MQ=255) ggTTATAACTCCAATCGCAGTGAGGAATAATTTTGGGGCCCTAATGCCTTCGTGTGGGCGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGc < 1:6817683/150‑1 (MQ=255) cTCCACTCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTa < 2:2529795/150‑1 (MQ=255) tCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGGCCCCCCAACAAACAAAGCGGTGGTTG‑GCCCCCGCCGTTCCGGGGTTGGGGGGCGGGGCCCCTCCCACCAAGGGGGCGGGGGCGGCGCGag > 2:1001572/1‑150 (MQ=255) tCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCGAAGCAAACACTGCGGTGGATT‑CCACCCGCTTTGCCGGTGTTCGCGGGCGTGCCCGCACCCACAATGGGCGCGGGGACTgcccgag > 2:2108723/1‑145 (MQ=25) cAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCCCATCAACACCGTCGGGGGGTT‑CACCACGCGTTGCCCGGGTTCGGGGGCGGGGCCGCACCCACAAGGGGGGCGGGGCCGGCGCTagcc > 1:3463703/1‑150 (MQ=255) aaTCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTagcca < 2:4708939/150‑1 (MQ=255) gCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAgccagcca < 2:4219927/150‑1 (MQ=255) cAGTGAGGAATAAATTTGGGGCCCTACTGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGccac < 1:577769/150‑1 (MQ=255) cAGTGAGGAATAAATTGGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGccac < 2:782891/150‑1 (MQ=255) gTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCAAACACAGCGGTGGGTG‑CCACCCGCTTTGCCGGTGTTGGCGGGCCTGCCCGCTCCCACAATGGGCGCGGGGCCTGCGCGAGCCCGccccca > 2:6744721/1‑150 (MQ=37) aataatTTTGGTGCCCTTTTGCAGTGGTGTGGGCGGGGGCGAGCCCGCGAAGCATCCACTGGGGTGGATG‑CCACCGGCTTTGCCGGTTTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCAcgc < 1:7366526/150‑1 (MQ=37) aaTTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAAt < 1:7139577/150‑1 (MQ=255) aTTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATg < 1:2020179/150‑1 (MQ=255) tAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACAGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCCCCCGCACGCCAATGGCTTCCAGgcg > 2:7173529/1‑150 (MQ=255) ttCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGggcg < 2:5621893/150‑1 (MQ=255) tgtgGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑TCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCt > 1:3041309/1‑150 (MQ=255) ggAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTtctc < 2:1212705/150‑1 (MQ=255) gCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACCAGGGGCGCGGGGCCTGCGCGAGCCAGCCCCCAGCACCCGACTGGCTTCCGGGCGCAGGGCGGCCTTCTcccc > 2:643998/1‑148 (MQ=37) cGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTACAGGCGCAGGGCGGCCTTCTCCAGc < 2:4166340/150‑1 (MQ=255) gCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCAtt < 2:6107585/150‑1 (MQ=255) cGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTg > 2:6342422/1‑150 (MQ=255) gAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGc < 2:2602859/150‑1 (MQ=255) cccGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAg < 1:8024208/150‑1 (MQ=255) cgcgAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGc < 1:2500388/150‑1 (MQ=255) cgcgAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGc > 2:1672369/1‑150 (MQ=255) gcgAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGcc > 2:4982831/1‑150 (MQ=255) ggtggCATCCACCGCAGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCa > 2:391895/5‑150 (MQ=255) cgAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTgcccgctcccacaggaag < 1:3564052‑M2/70‑19 (MQ=255) tggCATCCACCGCAGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATc > 2:2436406/3‑150 (MQ=255) aTCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcg > 1:2068691/1‑150 (MQ=255) tCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcgc > 1:1088880/1‑150 (MQ=255) tCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcgc > 2:5539488/1‑150 (MQ=255) tCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcgc > 1:8146174/1‑150 (MQ=255) cACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCgcgc > 1:7534358/1‑150 (MQ=255) cACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCgcgc > 2:3024830/1‑150 (MQ=255) cACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCgcgc > 2:3399681/1‑150 (MQ=255) aCTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGcgcc > 1:3712172/1‑150 (MQ=255) aCTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGcgcc > 2:7919479/1‑150 (MQ=255) cTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGcgccg > 1:1753859/1‑150 (MQ=255) | CAGAGGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGC > NC_002947/1316545‑1316843 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |