| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,316,702 | A→G | 8.2% | intergenic (‑215/+63) | PP_1144 ← / ← rapA | membrane protein/RNA polymerase‑associated protein RapA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,316,702 | 0 | A | G | 8.2% | 1291.4 / 23.5 | 454 | intergenic (‑215/+63) | PP_1144/rapA | membrane protein/RNA polymerase‑associated protein RapA |
| Reads supporting (aligned to +/- strand): ref base A (158/237); new base G (31/5); total (208/246) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.88e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 461 total aligned reads displayed.
GTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAG > NC_002947/1316553‑1316851 | tataGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATACCTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGAt < 2:2620357/150‑1 (MQ=255) tataGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGAt < 2:654410/150‑1 (MQ=255) tataGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGAt < 2:2891336/150‑1 (MQ=255) ataGGAAGGAGTACTTAAGCCGTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACCGCAGTGGATg < 2:8550638/150‑1 (MQ=255) taGGAAGGAGTACTTAAGCCTTCCTGACTAATGGAACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACCGCAGTGGATGc < 1:284905/150‑1 (MQ=255) ggaaggaGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGGCCGCGAAGCCTCCCCTGCGGGGGAGGccc > 1:8597696/1‑149 (MQ=255) gaaggaGTACTTAAGCCTTCCTAACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGGCCGCGCAGCATCCACGGCGGGGGGTGCCAc > 2:3870083/1‑150 (MQ=255) aggaGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCg < 2:5939871/150‑1 (MQ=255) gaGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGCAGCAACCACATCGGTGGATGCCaaccgc > 1:7963022/1‑145 (MQ=255) tactgctgCCTTCGTGACTACTGGCACAATGTTTTCGCCGTTTTGGTTCGCACTCCAATCGCAGTGAGGAATACATTTGGGGCCCTACTGCCTGCCGGTGGGAGCGGGCGCGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCt‑tt < 1:4642774/143‑1 (MQ=255) tACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGCTTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTACTGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCt‑tt < 2:6095223/150‑1 (MQ=255) cTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGc < 2:2638074/150‑1 (MQ=255) ttAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAACTTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGcc < 1:2675047/150‑1 (MQ=255) ttAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACAGCGGTGGATGCCCCCGGCT‑TTGcc > 2:1234949/1‑150 (MQ=255) tAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCg < 2:3412233/150‑1 (MQ=255) tAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCg < 2:6411413/150‑1 (MQ=255) tAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCg < 1:7722890/150‑1 (MQ=255) tAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCg < 2:8804717/150‑1 (MQ=255) aaGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGGCCGCGCAGCAACCAAAGCGGGGGGTGGCACCCGCG‑TTggccg > 1:318773/1‑146 (MQ=255) gCCTTCCTGACTAATGGTACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCA‑AAGCCGgtt < 2:3688191/150‑2 (MQ=255) gCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGACTAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGCAGCATCCACGGCGGGGGGTGCCACCGGCT‑GTGCCGgtg > 2:7790769/1‑150 (MQ=255) ccttccttACTAATGGCACAATGATTTCTACGATTTGGTTATCACTCCATTCGCTTTGAGTAATAATTTTGGGTCCCTAATGCCTTCCTGTGGTAGCGGGCGAGCCCGCGAAGCATCCACTGCGTTGGATGCCACCGGCT‑TTGCCGgtgt < 1:1007003/150‑1 (MQ=38) cttcttGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCA‑AAGCCGgtggc < 2:7516627/150‑3 (MQ=255) ttCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGCAGCATCCACAGCGGTGGGTGCCCCCCGCG‑TTGACGGTGTTc > 2:6920354/1‑150 (MQ=255) ttCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCCCTGCGGGGGATGCCACCGGCT‑TTGCCGGTGTTc > 2:8043339/1‑150 (MQ=255) ttCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCAACCACAGCGGTGGGTGCCACCCGCG‑TTGCCGGTGTTc > 2:3525094/1‑150 (MQ=255) cTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCGAAACATACACAGAGGTGGAATCCAACCCCG‑TTGCCCGTGTTagcg > 2:189067/1‑150 (MQ=255) tGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCTGGGAGGCATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGACGCCGCCCATGCGGTGGAGGCCCCCGGCT‑GTGGCGGGGGTGGCgg > 2:5581238/1‑150 (MQ=255) aatAATGGCAATTTGATTTCTAAGATTTGGTTATAACTCCACTCGCTTTGAGTAATAAATTTGGGGCCCTATTGCCTTCCTTTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGc < 1:2191354/148‑1 (MQ=25) tAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCAACCACAGCGGGGGGTGCCACCGGCG‑TTGCCGGTGTTAGCGGGCGt > 1:6561972/1‑150 (MQ=255) tAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCAAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGt > 1:8140876/1‑150 (MQ=255) aTGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCGAAGCAACCCCAGCGGGGGGAGCCACCCGCGGTTGCCGG‑GTTGGCGGGGGTgc < 2:453262‑M2/150‑3 (MQ=255) acaATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCGCACCAACCACAGCGGTGGGTTCCCCCCGCG‑TTTCCGGTGTTAGCGGGCGTgccccca < 2:3222912‑M2/150‑8 (MQ=255) caATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCCCAGCAACCACAGCGGTGGTAGCCCCCCCCG‑TTGGCGGTGTTGGCGGGCGTgccccctc < 2:1782389‑M2/150‑9 (MQ=255) aaTGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTgcccgctcc < 2:5027145‑M2/150‑10 (MQ=255) tGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGGGGATGCCACCGGCG‑TTGCCGGTGTTCGCGGGCGTgcccgctcccc < 2:1387435‑M2/150‑12 (MQ=255) aTTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCGAAGCAACCACAGCGGGGGGTGCCCCCCGCG‑TTTCCGGGGTTAGCGGGCGGgcccccacccaca < 1:1447521‑M2/150‑14 (MQ=255) tttCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACaa < 1:7316707/150‑1 (MQ=255) tACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGCAGCATACACGGCGGGGGGTGCCACCCGCG‑TTGCCCGGGGTTGCGGGCGTGGCCGCACCCCCCAgggg > 1:2584223/1‑150 (MQ=255) aTTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCCAACCAAACACAGCGGTGGTTTGCAACCCCC‑TTGCCGGTTTTAGCGGGCGTGCCCCCGCCCACCAAGGGcgcg > 1:3602266/1‑150 (MQ=255) gTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGCAGCATACACAGCGGTGGGTGGCCCCCGCG‑TTTGCGGTGGTGGCGGGCGTGCCCGCGACCCCAACGGGGGCgggggc > 1:5695271/1‑148 (MQ=255) gTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATACACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTAGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGcc > 2:7066622/1‑150 (MQ=255) ataACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGGAGCAACCACTGCGGGGGATTCCACCCGCG‑TTGCCGGTGTTCGCGGGCGTGGCCGCGCCCCCCACGGGCGCGGGGCCGgc > 2:4876324/1‑150 (MQ=37) aCTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATACACAGCGGTGGATGCCACCCGCG‑TTTCCGGTGTTCGCGGGCGTGCCCGCTCCCACAACGGGCCCGGGGCCAgcgcg > 2:5724319/1‑149 (MQ=38) cTCCAATCGCAGTGAGTAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTa < 1:3487757/150‑1 (MQ=255) cTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTACCCGCTCCCACAAGGGGCGCAGGCCCCgcgccc < 2:721100/150‑3 (MQ=255) tCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGGCCCCCCAACAAACAAAGCGGTGGTTGGCCCCCGCC‑GTTCCGGGGTTGGGGGGCGGGGCCCCTCCCACCAAGGGGGCGGGGGCGGCGCGag > 2:1001572/1‑150 (MQ=255) tCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGCAGCATCCACAGCGGTGGATGCCACCCGCG‑TTGCCGGGGTTCGCGGGCGTGCCCCCGCCCACCACGGGCGCGGGGCCAGCGCGag > 2:4320109/1‑150 (MQ=255) tCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCCCAGCAAACCCAGCCCTGGCTGCCCCCCCCT‑ATTCCCGGGTTCGCGGGCGGGCCCCCACCCCCCACGGGCGCCCGGCCAgcgcgac > 2:7350545/1‑147 (MQ=255) ccAATCGCTGTGTGGAATAAATTTGGGGCCATAATGCCTTCCTGTGGGAGCGGGCGCCCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCAGGCCCCgcgcccct < 1:3990247/150‑5 (MQ=25) aaTCGCAGTGTGTAATAATTTTGGGGCCCTAATGCCTTCGTGTGGGAGCGGGCGCGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTagcca < 1:6209695/150‑1 (MQ=37) aTCGCTGTTAGTAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGGGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGAGCGCAGGCCCCgcgccccttgt < 1:2494341/150‑8 (MQ=25) ccgTGAGTAATAAATTTGGGGCCCTAAGGCCTGCCTTTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGccac < 1:577472/148‑1 (MQ=255) ccgTGAGGAATAAATTTGGGGCCCCAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGccac < 1:4220798/148‑1 (MQ=255) aaTAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCAcgc < 2:7836365/150‑1 (MQ=255) aaTAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCAcgc < 2:8261310/150‑1 (MQ=255) attttGGGGCCCTATGGCGTTCGTGGGGGCGCGGGCGACCCCGCGAAGCATCCACGGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAAt < 1:5914358/148‑1 (MQ=37) aTTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATg < 1:2020179/150‑1 (MQ=255) aTTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATg < 2:8204087/150‑1 (MQ=255) cTAATGCCTTCCTGTGGGAGCGGGCGAGGCCGCGAAGCATCCACGGCGGGGGGTGCCACCGGCG‑TTTCCGGTGTTCGCGGGCGTGCCCCCTCCCACAAGGGGCGCGGGGGCGGCGCGAGCCACCCCCCACCACCCGAATGGCGTCCAGgc > 2:6688169/1‑150 (MQ=255) aggCCTTCCGGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCa < 1:7108809/148‑1 (MQ=255) aTGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCa < 2:2066228/150‑1 (MQ=255) ttCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGggcg < 2:5125456/150‑1 (MQ=255) cgtgtgGGCGGGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGGGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGggcggc < 1:6889933/148‑1 (MQ=255) gCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTgcccgctcccacaggaaggcattagg < 1:529434‑M2/87‑27 (MQ=255) gCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTgcccgctcccacaggaaggcattagg > 2:529434‑M2/1‑61 (MQ=255) gAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGGGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCCGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCAGTGc > 2:1084828/1‑150 (MQ=255) aGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGcc < 2:7686454/150‑1 (MQ=255) cccGCGAAGCATCCATTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAg < 1:4362894/150‑1 (MQ=255) cccGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAg < 2:2540041/150‑1 (MQ=255) cccGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGCgcccgctcccacaggaaggcattagggccccaaatttattcctcactgcgattggagttataaccaaatcgtagaaatcattgtgccattagtc < 1:661044‑M2/150‑95 (MQ=255) cccGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGCgcccgctcccacaggaaggcattagggccccaaatttattcctcactgcgattggagttataaccaaatcgtagaaatcattgtgccattagtc < 1:3735095‑M2/150‑95 (MQ=255) ccGCGAAGCATCCACTGCGGTGGATGCCACCGGCG‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAgg > 2:4191186/1‑150 (MQ=255) cgcgAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGc > 2:1672369/1‑150 (MQ=255) gcgAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGcc > 2:1563149/1‑150 (MQ=255) gcgAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGcc > 2:5531587/1‑150 (MQ=255) gcgAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGcc > 2:2969763/1‑150 (MQ=255) gcgAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGcc > 2:6188230/1‑150 (MQ=255) gAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCAt > 1:7497944/1‑150 (MQ=255) gAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCAt < 2:3933708/150‑1 (MQ=255) tggCATCCACCGCAGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTagcc < 2:2515474/85‑1 (MQ=255) atcATCCTCTGGGGTGGATGCCACGGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTGCCACAAGGGGCGCGGGGCCTGCTCTAGCCAGCCACCAGCACGCGAATGGCTTCCATGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCt < 1:6766218/148‑1 (MQ=39) gCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCtt < 1:5053279/150‑1 (MQ=255) cATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTc > 2:2726254/1‑150 (MQ=255) aTCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAgg < 2:2803377/111‑1 (MQ=255) aTCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcg > 2:2241886/1‑150 (MQ=255) aTCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcg > 1:2068691/1‑150 (MQ=255) tCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTgcccgctcccacaaggggcgcggggccccaaatttattcctcactgcgattggagttataaccaaatcgtagaaatcattgtgccattagtcaggaaggcttaag < 2:4715054‑M2/150‑106 (MQ=255) tCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcgc > 2:3626864/1‑150 (MQ=255) tCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcgc > 1:1088880/1‑150 (MQ=255) cACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCgcgc > 2:3780373/1‑150 (MQ=255) cACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCgcgc > 2:3024830/1‑150 (MQ=255) aCTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGcgcc > 2:7919479/1‑150 (MQ=255) aCTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGcgcc > 1:48673/1‑150 (MQ=255) cTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGcgccg > 1:1753859/1‑150 (MQ=255) tGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGcgccgc > 1:495735/1‑150 (MQ=255) gccGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGcgccgc > 1:1605962/3‑150 (MQ=255) cGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCtt < 1:8810281/150‑1 (MQ=255) cGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCtt > 1:8714106/1‑150 (MQ=255) aTGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCCGCCACCCGCACGCGAATGGCTGCCAGGCGCGGGGCGGCCTGCTCCCGCGTGGCCCGGCCATCGTCGCGCCGCTTgcgcgg > 2:8664430/1‑148 (MQ=37) | GTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCT‑TTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAG > NC_002947/1316553‑1316851 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |