| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,316,710 | G→C | 13.9% | intergenic (‑223/+55) | PP_1144 ← / ← rapA | membrane protein/RNA polymerase‑associated protein RapA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,316,710 | 0 | G | C | 13.9% | 1334.4 / 66.3 | 462 | intergenic (‑223/+55) | PP_1144/rapA | membrane protein/RNA polymerase‑associated protein RapA |
| Reads supporting (aligned to +/- strand): ref base G (160/231); new base C (59/12); total (219/243) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.28e-11 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 472 total aligned reads displayed.
AGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGA > NC_002947/1316561‑1316859 | aggaGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAAGGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCg < 1:1085206/150‑1 (MQ=255) gaGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGCAGCATACACAGCGGTGGATG‑CCACCCGc > 2:2622008/1‑150 (MQ=255) tACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGCTTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTACTGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCttt < 2:6095223/150‑1 (MQ=255) tACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCttt < 2:8048330/150‑1 (MQ=255) cTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGc < 2:1346099/150‑1 (MQ=255) ttAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGGAGCAAGCCCAGCGGGGGTTG‑CCCCCggggtttgc > 2:5917829/1‑143 (MQ=255) ttAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGGAGCAAACACAGCGGTGGATG‑CCACCCGCGTTGcc > 1:3543149/1‑150 (MQ=255) ttAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCCCAGCAACCACCGCGGTGGGTG‑CCCCCGGCGGTGcc > 2:3758613/1‑150 (MQ=255) ttAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCAAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGACG‑CCACCGGCTTTGcc > 2:3517481/1‑150 (MQ=255) tAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCg < 1:7722890/150‑1 (MQ=255) tAAGCCTTCCTGACTAATGGCACAATGAGTTCTACGATTGGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCg < 2:7411295/150‑1 (MQ=255) gCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGTAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGCGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGgtg < 1:4024563/150‑1 (MQ=255) gCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACACCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGCGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGgtg < 1:890095/150‑1 (MQ=255) ccttccttACTAATGGCACAATGATTTCTACGATTTGGTTATCACTCCATTCGCTTTGAGTAATAATTTTGGGTCCCTAATGCCTTCCTGTGGTAGCGGGCGAGCCCGCGAAGCATCCACTGCGTTGGATG‑CCACCGGCTTTGCCGgtgt < 1:1007003/150‑1 (MQ=38) ccTTCCTGACTAATGGCACAATGATTTCTCCGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGgtgt < 1:8601889/150‑1 (MQ=255) ttCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATTACTCCCATCGCAGTTAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCTCGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTc < 2:8744893/150‑1 (MQ=38) ttCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAATTTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCAAAGCCGgtggca < 2:4838462/150‑4 (MQ=255) ccTGAATAATGGCACAATTATTTCTACTTTTTTTTTATAACTCCAATCGCAGTGAGTAATAATTTGGGGGCCATAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTcgc < 1:4544145/150‑1 (MQ=37) tGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCTGGGAGGCATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGACGCCGCCCATGCGGTGGAGG‑CCCCCGGCTGTGGCGGGGGTGGCgg > 2:5581238/1‑150 (MQ=255) tGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCgg < 2:6393402/150‑1 (MQ=255) tGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCCCACCAACCACAGCCGGGGATG‑CCACCCGCGTTGCCGGGGTTCGCgg > 2:3205675/1‑150 (MQ=255) aCTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGc < 2:2721992/150‑1 (MQ=255) aTGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTgc > 2:4287918‑M2/1‑148 (MQ=255) aTGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTgc > 2:7282154‑M2/1‑148 (MQ=255) ggCACAATGATTTCTACGATTGGGTTATAACTCCACGCGCAGTGCGGAATAAATTTGGGGCCCTACGGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTgccc > 1:1736134‑M2/1‑146 (MQ=255) acaATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCGAAGCAAACAAAGCGGTGGATT‑CCACCCGCATTGCCCGTGTTCGCCGGCCGGccccca > 1:8815625/1‑147 (MQ=255) tGATTTCTACGTTTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTgcccgctccca > 1:1319074‑M2/1‑139 (MQ=255) tGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGGCCCCGCATCAACCACAGCGGTGGTTG‑GCACCCGCGTTTGCGGGGTTTGCGGGGGGGGCCGCGCCca > 2:2264931/1‑150 (MQ=255) tGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCCAAGCAAACACAGCCGTGGATG‑CCACCCGCGTTTCCGGTGTTGGCGGGCGTgccccctcccc < 2:5478845‑M2/150‑12 (MQ=255) tACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGGGGAGCATCCACTGCGGGGGGTG‑CCCCCCGCGTTTCCGGTGGTCGCGGGGGTGGCCGCACCCACAAaggg > 2:1925573/1‑150 (MQ=255) tACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCCTCCACTGCGGGGGGAG‑CCACCCGCATTTCCGGGGTTGGCGGGGGGGGCCCCACCCACAAgggg > 1:2136236/1‑150 (MQ=255) tACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCAACCACAGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAgggg > 2:7943119/1‑150 (MQ=255) tACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCCAAGCAACCACAGCGGTGGGTT‑CCACCCGCGTTGGCCGTGTTGGCGGGCGGGCCCCCACCCACaaacgg > 1:6412587/1‑146 (MQ=255) gATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGgcgc < 2:1566927/150‑1 (MQ=255) ttgggTTATAACGCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCgg < 2:8662755/147‑1 (MQ=255) tgggTTAAAACTCCAATCGCAGTGAGTAATAATTTTGGGGCCCTAATGCCTTCCTGGGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCggg < 1:6069889/148‑1 (MQ=255) ggTTAGACCGCCAATCGCAGGGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGGGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGc < 1:6974024/150‑1 (MQ=37) gTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGGCCCCCCACCAAACACAGCGGTGGGTGCCCACCCCCTTTACC‑GTGTTGGCGGGCGGGCCCCCGACCCCAAAGGGCGCCGGGcc > 1:526832/1‑150 (MQ=255) gTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGAGGGAGCGGGCGAGCCCCCCAACCAAACACCGCGGTGGTTG‑CCCCCGGCGTTGGCGGTGTTCGCGGGCGTGCCCGCACCCACAAGGGGCGCgggggc > 2:7038573/1‑148 (MQ=255) ataACTCCAAGCGCAGTGCGGAATAACTTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTgc < 2:7715098/150‑1 (MQ=255) tCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGCAGCATCCACAGCGGGGGATT‑GCACCCGCGGTTCCGGTGTTCGCGGGCGTGCCCGCGCCCCCCAGGGGCGCGGGGCCAGCGCTag > 2:6658031/1‑150 (MQ=255) ccACTCGCAGTGAGTAATAAATTTGGGGCCCTAATGCCTTCCGTTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTagc < 1:2027307/150‑1 (MQ=255) cAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCGGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGAGCGCAGGCCCCgcgcccctt < 2:8313335/150‑6 (MQ=37) cctCGCTGTGCGGAATAATTTGGGGGCCCTATTGCCTTCGTGTGGGCGCGGGCGCGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTagcca < 1:1785343/148‑1 (MQ=25) gCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCCAAACAAACACAGCCGTGGATG‑CCACCCGCTTTTCCCGTGTTCGCGGGCGTGCCCCCAACCACAAAGGGCGCGGGGCCAGCGCAAgccaccca > 1:6587587/1‑150 (MQ=255) ccgTGAGTAATAAATTTGGGGCCCTAAGGCCTGCCTTTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGccac < 1:577472/148‑1 (MQ=255) ccgTGAGGAATAAATTTGGGGCCCCAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGccac < 1:4220798/148‑1 (MQ=255) aGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGccacc < 1:686459/150‑1 (MQ=255) aaTAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCAcgc < 2:7836365/150‑1 (MQ=255) aaTAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCGAACCAAACACTGCGGTGGATT‑CCACCCGCATTTCCCGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCAGCGCAAGCCAGCCACCACCAcgc > 2:5705854/1‑150 (MQ=255) attttGGGGCCCTATGGCGTTCGTGGGGGCGCGGGCGACCCCGCGAAGCATCCACGGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAAt < 1:5914358/148‑1 (MQ=37) aaTTGGGGGCCCTAATGCCTTCCTGGGGGCGGGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAAt < 1:3751506/150‑1 (MQ=255) aTTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATg < 2:6511214/150‑1 (MQ=255) cTACTGCCTTCCTGTGGGCGCGGGCGCGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGgc < 1:2518548/150‑1 (MQ=255) tAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACAGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCCCCCGCACGCCAATGGCTTCCAGgcg > 2:7173529/1‑150 (MQ=255) gCCTTCCTGTGGGAGCGGGCGAGGCCGGGAAGCATACAAAGCGGTGGATT‑GCACCCGCGTTTGCGGTGTTGGCGGGCGTGGCCGCGCCCCCCACGGGCGCGGGGGCGGCGCGAGCCCGCCCCCACCACCCCCATGGCGTCCCGGCGCacg > 2:8207295/1‑148 (MQ=255) gCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAgg < 2:3646113/150‑1 (MQ=255) gCCTTCCTGGGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAgg < 1:2697592/150‑1 (MQ=255) cTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGggc < 2:4416531/150‑1 (MQ=255) ccTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGggcggc < 1:570160/150‑1 (MQ=255) cTGTGGGCGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGcc < 2:2759941/150‑1 (MQ=255) gggAGCGGGCGAGCCCCCCAAGCAACCACTGCGGTGGATG‑CCACCCGCGTTGCCGGTGTTCGCCGGCGTgcccgctcccacaggaaggcaatagggccccaaatgtattcctcacggcgattggagttataaccaaatcgtagaaatcat < 2:384789‑M2/150‑82 (MQ=255) gAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTcc < 2:1684257/150‑1 (MQ=255) cGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTACAGGCGCAGGGCGGCCTTCTCCAGc < 2:4166340/150‑1 (MQ=255) gggCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCa < 2:7795051/150‑1 (MQ=255) gCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCTCgcccgcgcccacaggaaggcattagggccccaaaattattactaacagcgattggggttataaccaaaaaggagaaataattgttccat < 1:3219919‑M2/150‑90 (MQ=255) gCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTgcccgctcccacaggaaggcattagggccccaaatttattcctcactgcgattggagttataaccaaatcgtagaaatcattgtgccat < 1:3619589‑M2/150‑90 (MQ=255) gAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTgcccgctcccacaggaaggcattagggccccaaatttattcctcactgcgattggagttataaccaaatcgtagaaatcattgtgccatta < 1:4932798‑M2/150‑92 (MQ=255) gAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGc > 1:2599290/1‑150 (MQ=255) gAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGc < 2:1817656/150‑1 (MQ=255) gAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGGGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCCGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCAGTGc > 2:1084828/1‑150 (MQ=255) cccGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAg < 1:8024208/150‑1 (MQ=255) cccGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAg < 2:2540041/150‑1 (MQ=255) cccGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAg < 2:2881610/150‑1 (MQ=255) ccGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAgg > 2:2451273/1‑150 (MQ=255) ccGCGAAACATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCTCgcccgctcccacaggaaggcagtagggccccaaatttattcctcacggcgattggagttataaacaaatcgtagaaatcattgtgccattagtca < 1:2325135‑M2/150‑96 (MQ=255) cgcgAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCCGCCCCCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGc > 1:4852694/1‑150 (MQ=255) ccggtaGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGc > 2:5222169/6‑150 (MQ=255) gcgAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCTCgcccgctcccaccggaaggcagtagggccccaaatttattcctcactgcgattggaggtataaccaactcgtagaaatccttgtgccagtagtcagg < 2:499591‑M2/150‑98 (MQ=255) gcgAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGcc > 1:1500721/1‑150 (MQ=255) gcgAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGcc > 2:6188230/1‑150 (MQ=255) gcgAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGcc > 1:7372909/1‑150 (MQ=255) cgAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTgcccgctcccacaggaag > 2:3564052‑M2/1‑52 (MQ=255) tggCATCCACCGCAGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATc > 2:5044772/3‑150 (MQ=255) aTCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcg > 2:2075685/1‑150 (MQ=255) aTCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcg > 1:5037692/1‑150 (MQ=255) cACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCgcgc > 1:7534358/1‑150 (MQ=255) cACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCgcgc > 2:3399681/1‑150 (MQ=255) cACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCgcgc > 2:1452294/1‑150 (MQ=255) cACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCgcgc > 2:3024830/1‑150 (MQ=255) tGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGcgccgc > 1:6652987/1‑150 (MQ=255) ggTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTg < 1:8719520/150‑1 (MQ=255) ggATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTgcgc < 2:4559096/150‑1 (MQ=255) gATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCa < 1:3024830/150‑1 (MQ=255) aTG‑CCACCGGCTGTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAg < 2:6888900/150‑1 (MQ=255) tG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAgg < 1:8150766/150‑1 (MQ=255) tG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAgg < 2:3891110/150‑1 (MQ=255) cACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCg > 1:7150021/1‑150 (MQ=255) aCCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGt > 2:1181739/1‑150 (MQ=255) ggCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGa < 1:4300127/150‑1 (MQ=255) | AGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGA > NC_002947/1316561‑1316859 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |