| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,316,713 | T→G | 10.3% | intergenic (‑226/+52) | PP_1144 ← / ← rapA | membrane protein/RNA polymerase‑associated protein RapA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,316,713 | 0 | T | G | 10.3% | 1281.6 / 12.2 | 460 | intergenic (‑226/+52) | PP_1144/rapA | membrane protein/RNA polymerase‑associated protein RapA |
| Reads supporting (aligned to +/- strand): ref base T (151/223); new base G (49/12); total (219/241) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.55e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 473 total aligned reads displayed.
TACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTT > NC_002947/1316566‑1316862 | tactgctgCCTTCGTGACTACTGGCACAATGTTTTCGCCGTTTTGGTTCGCACTCCAATCGCAGTGAGGAATACATTTGGGGCCCTACTGCCTGCCGGTGGGAGCGGGCGCGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑ttt < 1:4642774/143‑1 (MQ=255) cTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGc < 2:1346099/150‑1 (MQ=255) ttAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGGAGCAAACACAGCGGTGGATG‑CCACCCGC‑GTTGcc > 1:3543149/1‑150 (MQ=255) tAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCg < 2:3412233/150‑1 (MQ=255) tAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCg < 2:6411413/150‑1 (MQ=255) aaGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGGCCGCGAAGCATGCACTTCGGTGGTTT‑GCACCGGC‑TTTGGCgg > 2:6733404/1‑150 (MQ=255) aaGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCgg < 2:6929992/150‑1 (MQ=255) gCCTTCCTGACTAATGGTACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑AAAGCCGgtt < 2:3688191/150‑2 (MQ=255) gCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGTAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGCGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGgtg < 1:4024563/150‑1 (MQ=255) gCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTCAGGCCTTCCGGTGGGCGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGgtg < 1:4231099/150‑1 (MQ=255) ccttccttACTAATGGCACAATGATTTCTACGATTTGGTTATCACTCCATTCGCTTTGAGTAATAATTTTGGGTCCCTAATGCCTTCCTGTGGTAGCGGGCGAGCCCGCGAAGCATCCACTGCGTTGGATG‑CCACCGGC‑TTTGCCGgtgt < 1:1007003/150‑1 (MQ=38) ccTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGgtgt < 2:1113794/150‑1 (MQ=255) ccTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGGGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑AAAGCCGgtgg < 1:7544077/150‑2 (MQ=255) cttcttGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑AAAGCCGgtggc < 2:7516627/150‑3 (MQ=255) ttCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATTACTCCCATCGCAGTTAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCTCGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTc < 2:8744893/150‑1 (MQ=38) ttCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTc < 2:7230750/150‑1 (MQ=255) ttCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACAGCGGTGGATA‑CCACCCGC‑GTTGCCGGGGTTc > 2:3884346/1‑150 (MQ=255) ttCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCAACCACAGCGGTGGGTG‑CCACCCGC‑GTTGCCGGTGTTc > 2:3525094/1‑150 (MQ=255) tCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGGCCGCGTATCAAACAATGCGGTGGTTT‑GCACCGGC‑TTTTGCCGTGttgg > 2:3064529/1‑148 (MQ=255) tGACTAATGGCACAATGATTTCTACGTTTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCgg < 1:6682193/150‑1 (MQ=255) tGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGGCCGCGGAGCAACCACAGGCGGGGGTG‑GCACCCGC‑GTTGGCGGTGTTCGCgg > 1:5703780/1‑150 (MQ=255) tGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCgg < 2:5274601/150‑1 (MQ=255) tAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGCAGCAAACACAACGGGGGGTGCCCACCCCG‑TTTGCCGG‑GTTCGCgggggg > 1:7794672/1‑147 (MQ=255) aTGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTgc > 2:7282154‑M2/1‑148 (MQ=255) aTGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑ATTGCCGGTGTTAGCGGGCGTgc < 2:4300127‑M2/150‑3 (MQ=255) ggCACAATGATTTCTACGTTTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTgccc > 1:1486265‑M2/1‑146 (MQ=255) gCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGGCCGCCCACCAAACACAGCGGGGGGTG‑GCACCCGCGTTTGCCGG‑GTTGGGGGGCggggccc > 1:1899888/1‑144 (MQ=255) acaATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCGCACCAACCACAGCGGTGGGTT‑CCCCCCGC‑GTTTCCGGTGTTAGCGGGCGTgccccca < 2:3222912‑M2/150‑8 (MQ=255) acaATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCGAAGCAAACAAAGCGGTGGATT‑CCACCCGC‑ATTGCCCGTGTTCGCCGGCCGGccccca > 1:8815625/1‑147 (MQ=255) aaTGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCCAAACAACCACAGCGGGGGCTG‑CCACCCGC‑GTTTCCGGTGTTCGCGGGCGGgcccgcacc < 2:2936529‑M2/150‑10 (MQ=255) tGATTTCTACGTTTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTgcccgctccca > 1:1319074‑M2/1‑139 (MQ=255) tGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGGCCCCGCATCAACCACAGCGGTGGTTG‑GCACCCGC‑GTTTGCGGGGTTTGCGGGGGGGGCCGCGCCca > 2:2264931/1‑150 (MQ=255) tACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCCTCCACTGCGGGGGGAG‑CCACCCGC‑ATTTCCGGGGTTGGCGGGGGGGGCCCCACCCACAAgggg > 1:2136236/1‑150 (MQ=255) ttgggTTATAACGCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCgg < 2:8662755/147‑1 (MQ=255) ggTTATACCTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGc < 2:7759930/150‑1 (MQ=255) gTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATACACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTAGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGcc > 2:7066622/1‑150 (MQ=255) aaCTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑GTTGCCGGTGTTCGCGGGCGTGCCCGCACCCACCAGGGGCGCGGGGCCTgcgc > 2:5008112/1‑150 (MQ=255) tCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGGCCCCCCAACAAACAAAGCGGTGGTTG‑GCCCCCGC‑CGTTCCGGGGTTGGGGGGCGGGGCCCCTCCCACCAAGGGGGCGGGGGCGGCGCGag > 2:1001572/1‑150 (MQ=255) tCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCGAAGCAAACACAGCGGTGGATG‑CCACCCGC‑GTTGCCCGTGTTCGCGGGCGTGCCCCCACCCACAAAGGGCCCGGGGCCTGCGCTag > 2:1974495/1‑150 (MQ=255) tCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGAGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTag > 2:7846282/1‑150 (MQ=255) ccACTCGCAGTGAGTAATAAATTTGGGGCCCTAATGCCTTCCGTTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTagc < 1:2027307/150‑1 (MQ=255) cAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCGGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGAGCGCAGGCCCCgcgcccctt < 2:8313335/150‑6 (MQ=37) aaTCGCAGTGTGTAATAATTTTGGGGCCCTAATGCCTTCGTGTGGGAGCGGGCGCGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTagcca < 1:6209695/150‑1 (MQ=37) aaTCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTagcca < 1:6559621/150‑1 (MQ=255) cAGTGAGGAATAAATTTGGGGCCCTACTGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGccac < 1:577769/150‑1 (MQ=255) aaTTGGGGGCCCTAATGCCTTCCTGGGGGCGGGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAAt < 1:3751506/150‑1 (MQ=255) ttGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGc < 2:6582133/150‑1 (MQ=255) ggggCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGCAGCATCCCCAGCGGTGGCTG‑CCACCCGC‑TTTGCCGGGGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCGAGCCAGCCACCAGCCCCCGCAAGGCtt > 2:7813858/1‑150 (MQ=37) gCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCa < 2:1569724/150‑1 (MQ=255) cTACTGCCTTCCTGTGGGCGCGGGCGCGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGgc < 1:2518548/150‑1 (MQ=255) aggCCTTCCGGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCa < 1:7108809/148‑1 (MQ=255) gCCTTCCTGTGGGAGCGGGCGAGGCCGGGAAGCATACAAAGCGGTGGATT‑GCACCCGC‑GTTTGCGGTGTTGGCGGGCGTGGCCGCGCCCCCCACGGGCGCGGGGGCGGCGCGAGCCCGCCCCCACCACCCCCATGGCGTCCCGGCGCacg > 2:8207295/1‑148 (MQ=255) cTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGggc < 2:4416531/150‑1 (MQ=255) ttCGTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGggcg < 2:5422746/150‑1 (MQ=255) cgtgtgGGCGGGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGGGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGggcggc < 1:6889933/148‑1 (MQ=255) cTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGcc < 2:2635226/150‑1 (MQ=255) ggAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTgcccgctcccacaggaaggcattagggccccaaatttattcctcactgcgattggagttataaccaaatcgtagaaatcatt < 1:8674817‑M2/150‑83 (MQ=255) ggAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTtctc < 2:3793335/150‑1 (MQ=255) gAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTcc < 2:1684257/150‑1 (MQ=255) gCGGGCGAGCCCGCGAAGCATACACTGCGGTGGATT‑CCACCGGC‑TTTTCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAg > 2:7960936/1‑150 (MQ=255) ggCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTgcccgctcccccaggaaggccttagggcccccaaggtattcctcacggcgattggagtgataacccaatcggagaaatcattgtgcca < 2:4855137‑M2/150‑89 (MQ=255) gCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCTCgcccgcgcccacaggaaggcattagggccccaaaattattactaacagcgattggggttataaccaaaaaggagaaataattgttccat < 1:3219919‑M2/150‑90 (MQ=255) gCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTgcccgctcccacaggaaggcattagggccccaaatttattcctcactgcgattggagttataaccaaatcgtagaaatcattgtgccat < 1:3619589‑M2/150‑90 (MQ=255) gCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTgcccgctcccacaggaaggcattagggccccaaatttattcctcactgcgattggagttataaccaaatcgtagaaatcattgtgccat < 2:5669513‑M2/150‑90 (MQ=255) gCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTgcccgctcccacaggaaggcattagg < 1:529434‑M2/87‑27 (MQ=255) gCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCAtt < 2:6107585/150‑1 (MQ=255) gCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCAtt < 1:5917829/150‑1 (MQ=255) gAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGc < 2:1817656/150‑1 (MQ=255) gAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGc > 1:2599290/1‑150 (MQ=255) cccGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAg < 2:2540383/150‑1 (MQ=255) cccGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAg < 1:8024208/150‑1 (MQ=255) ccGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTgcccgctcccacaagaaggcattagggccccaaatttattcctcactgcgattggagttataaccaaatcgtagaaatcattgtgccattagtca < 1:2778509‑M2/150‑96 (MQ=255) ccGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑GTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAgg > 2:4191186/1‑150 (MQ=255) ccGCGAAACATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCTCgcccgctcccacaggaaggcagtagggccccaaatttattcctcacggcgattggagttataaacaaatcgtagaaatcattgtgccattagtca < 1:2325135‑M2/150‑96 (MQ=255) gcgAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGcc > 1:7372909/1‑150 (MQ=255) cggtggCATCCACCGCAGTGGATG‑CTACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGcc > 1:6592209/6‑150 (MQ=255) gAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCAt < 2:3933708/150‑1 (MQ=255) tggCATCCACCGCAGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTagcc < 2:2515474/85‑1 (MQ=255) tggCATCCACCGCAGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATc > 2:5044772/3‑150 (MQ=255) gCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCtt < 1:5053279/150‑1 (MQ=255) cATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTc > 2:2726254/1‑150 (MQ=255) aTCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAgg < 2:2803377/111‑1 (MQ=255) aTCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcg > 2:2075685/1‑150 (MQ=255) tCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcgc > 1:1088880/1‑150 (MQ=255) tCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcgc < 2:5844313/150‑1 (MQ=255) tCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcgc > 2:5539488/1‑150 (MQ=255) aCTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGcgcc > 1:48673/1‑150 (MQ=255) tGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGcgccgc > 2:8080538/1‑150 (MQ=255) ggTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTg < 1:8719520/150‑1 (MQ=255) gATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCa < 1:3024830/150‑1 (MQ=255) tG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAgg < 1:8150766/150‑1 (MQ=255) g‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAggg > 1:4988491/1‑150 (MQ=255) g‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAggg > 2:1504674/1‑150 (MQ=255) aacACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCAGTGCCAGGCCATCTACGCGCCGCTTGCGCAggg > 2:4630438/3‑150 (MQ=255) aCCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGt > 2:1181739/1‑150 (MQ=255) ccGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTc > 2:6250388/1‑150 (MQ=255) ccGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTc < 1:1666080/150‑1 (MQ=255) ccGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTc < 2:3611415/150‑1 (MQ=255) ggC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGa < 1:4300127/150‑1 (MQ=255) tttGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGAttt > 1:7241233/1‑150 (MQ=255) | TACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATG‑CCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTT > NC_002947/1316566‑1316862 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |