BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	1,388,209	A→T	5.8%	L16Q (CTG→CAG)	PP_1204 ←	lipoprotein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	1,388,209	0	A	T	5.8%	1114.0 / 27.2	432	L16Q (CTG→CAG)	PP_1204	lipoprotein
Reads supporting (aligned to +/- strand): ref base A (186/192); new base T (9/21); total (207/225)
Fisher's exact test for biased strand distribution p-value = 5.65e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 440 total aligned reads displayed.

GCACACGTCGCTGCGGAAGCTCCATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCTGCTCGGTGCGGTGCTTGTACTCCA  >  NC_002947/1388060‑1388358

     cGTCGCTGCGGAAGCTCCATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTgcg                                                                                                                                                   <  2:1334284/150‑1 (MQ=255)

       tCGCTGCGGAAGCTCCATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTgcggc                                                                                                                                                 <  1:7576468/150‑1 (MQ=255)

         gCTGCGGAAGCTCCATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCCCAGTGCGgcg‑c                                                                                                                                              >  2:2220583/1‑150 (MQ=255)

         gCTGCGGAAGCTCCATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGgcg‑c                                                                                                                                              <  1:3457345/150‑1 (MQ=255)

          cTGCGGAAGCTCCATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACTGTGCGGCG‑cc                                                                                                                                             <  2:6035309/150‑1 (MQ=255)

            gCGGAAGCTCCATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACTGTGCGGCG‑ccct                                                                                                                                           <  1:1900554/150‑2 (MQ=255)

            gCGGAAGCTCCATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACTGTGCGGCG‑ccct                                                                                                                                           <  1:3893759/150‑2 (MQ=255)

            gCGGAAGCTCCATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACTGTGCGGCG‑ccct                                                                                                                                           <  1:6118435/150‑2 (MQ=255)

                aaGCTCCATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAg                                                                                                                                       <  2:1747668/150‑1 (MQ=255)

                aaGCTCCATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAg                                                                                                                                       >  2:1772871/1‑150 (MQ=255)

                aaGCTCCATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAg                                                                                                                                       <  2:7013201/150‑1 (MQ=255)

                  gCTCCATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGAGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAggg                                                                                                                                     >  2:669177/1‑150 (MQ=255)

                    tCCATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTa                                                                                                                                   >  1:6064263/1‑150 (MQ=255)

                    tCCATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTa                                                                                                                                   >  1:1969056/1‑150 (MQ=255)

                    tCCATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTa                                                                                                                                   >  1:4431922/1‑150 (MQ=255)

                    tCCATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTa                                                                                                                                   >  1:804885/1‑150 (MQ=255)

                      cATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCCAGGGTaaa                                                                                                                                 >  2:6848704/1‑150 (MQ=255)

                      cATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTaaa                                                                                                                                 >  2:1937643/1‑150 (MQ=255)

                       aTCACCTTCGGCTCGCCTACATGGTTCTGCTGGGTTTGCTCGAGCTGTTTGCGCTCGACGCGCTCCTCTTGGTCGCTGCGGTGGGACATGTGGTTGGCGCTGCCGCTGACGTGCTGGGCGCCGCACTGTGCGGCG‑CCCCCAAGGGTAAAg                                                                                                                                <  2:79105/150‑1 (MQ=255)

                       aTCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCCAGGGTAAAg                                                                                                                                >  1:8728908/1‑150 (MQ=255)

                       aTCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCCAGGGTAAAg                                                                                                                                >  1:2059987/1‑150 (MQ=255)

                        tCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAgg                                                                                                                               <  2:7185462/150‑1 (MQ=255)

                            cTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACt                                                                                                                           >  2:3385278/1‑150 (MQ=255)

                             ttCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACCCTGCGGCG‑CCCCCCAGGGTAAAGGTAAtt                                                                                                                          >  1:6619468/1‑150 (MQ=255)

                             ttCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACtt                                                                                                                          >  1:7904822/1‑150 (MQ=255)

                             ttCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACtt                                                                                                                          >  2:6929043/1‑150 (MQ=255)

                              tCGGCTCGCCGACATCGATCTGCTGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTc                                                                                                                         <  1:5016086/150‑1 (MQ=255)

                                   tCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGGAAAGGTAGTTCGCttt                                                                                                                    >  1:1742475/1‑149 (MQ=255)

                                     gCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTgca                                                                                                                  >  2:1982066/1‑148 (MQ=255)

                                     gCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTa                                                                                                                  <  2:3260470/150‑1 (MQ=255)

                                     gCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTa                                                                                                                  <  1:8037059/150‑1 (MQ=255)

                                          cATCGATCTGCCGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCTTGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGa                                                                                                             <  2:3010998/150‑1 (MQ=255)

                                           aTCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGAt                                                                                                            <  1:4331791/150‑1 (MQ=255)

                                             cGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCa                                                                                                          >  1:8646312/1‑150 (MQ=255)

                                              gATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCCAGGGTTAAGGTTCTTCGCTGGTACATGATCAc                                                                                                         >  1:5422684/1‑150 (MQ=255)

                                                tCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTc                                                                                                       <  2:4228886/150‑1 (MQ=255)

                                                  tGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCCAGGGTAAAGGTACTTCGCGTGTACCTGATCACTCGt                                                                                                     >  2:3146981/1‑150 (MQ=255)

                                                  tGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGt                                                                                                     <  2:5924267/150‑1 (MQ=255)

                                                       ggTATGCTCGCGCAGTTGGCGCTCGACGGGCTCCTCTTGGTCGGTGGGCGGGGACATGTGGTTGGCGCCGCCGCTGAGGCGCTGGGGGCCGCACTGTGGGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCAtt                                                                                                <  1:2257670/150‑1 (MQ=255)

                                                       ggTATGCTCGAGCCGTTTGCGCTCGACGCGCTCCTCAGGGGCGCTGCGCGGGGACATCTGGTTGGCGCCGCCGCTGACGAGCTGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGCTCACTCGTGCAtt                                                                                                <  1:4083709/150‑1 (MQ=255)

                                                       ggTAGGCTCGAGCAGTGTGCGCTCGACGCGCTCCTCATGGTCGCTGGGCTGGGACATCTGGTTGGCGCAGCCGCTTAGGAGCTGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCAtt                                                                                                <  1:1608513/150‑1 (MQ=255)

                                                        gTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTg                                                                                               <  2:5600826/150‑1 (MQ=255)

                                                         tATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCCTTgg                                                                                              >  1:5826334/1‑150 (MQ=255)

                                                          aTGCTCGAGCAGTGTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCCGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGt                                                                                             <  1:1396269/150‑1 (MQ=255)

                                                            gCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTa                                                                                           >  2:6376001/1‑150 (MQ=255)

                                                             cTCGAGCAGTGTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTAt                                                                                          <  2:4646604/150‑1 (MQ=255)

                                                                gAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGGACATGATCACTCGTGCCTTGGTTATCAg                                                                                       >  1:7142311/1‑150 (MQ=255)

                                                                gAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACGTCGCTTGTACATGATCACTCGTGCCTTGGTTATCAg                                                                                       >  2:2449446/1‑150 (MQ=255)

                                                                  gCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAgcg                                                                                     <  2:2701172/150‑1 (MQ=255)

                                                                   cAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACCGTGCGGCG‑CCCCCAAGGGGAAAGGTACTTCGCTTGTGCAAGATCACACGTGGATTGGTTATCAgcgg                                                                                    >  1:3112232/1‑150 (MQ=255)

                                                                   cAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGGGCGGCG‑CCCCCAAGGGTAAAGGTACTTAGCGTGTACATGATCACTCGTGGATTGGTTATCAgcgg                                                                                    >  1:1011667/1‑150 (MQ=255)

                                                                     gTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTCAAGGTACTTCGCTGGTACATGATCACTCGTGCCTTGGGTATCAgcggcg                                                                                  >  2:5993391/1‑150 (MQ=255)

                                                                      tttGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGa                                                                                 >  1:5258684/1‑150 (MQ=255)

                                                                           gcTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAAcgcg                                                                            >  2:445168/1‑150 (MQ=255)

                                                                           gcTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACACTGCGGCG‑CCCCCCAGGGGAAAGGTAATTAGCGTGTACAAGATCACACGTGCATTGGTTATAAGCGGCGAAcgcg                                                                            >  1:1202874/1‑150 (MQ=255)

                                                                           gcTCGACGCGCGCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAAcgcg                                                                            <  2:1543812/150‑1 (MQ=255)

                                                                            ctggACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCgg                                                                           <  2:5161791/147‑1 (MQ=255)

                                                                            cTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCgg                                                                           <  1:7222686/150‑1 (MQ=255)

                                                                                   cgcTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCa                                                                    >  2:8749205/1‑150 (MQ=255)

                                                                                      tcctcATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGa                                                                 <  2:5377006/150‑1 (MQ=255)

                                                                                      tcctcATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGa                                                                 >  2:5295720/1‑150 (MQ=255)

                                                                                        ctctTGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCTGGGCGCCGCACTGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAg                                                               <  1:1519967/150‑1 (MQ=255)

                                                                                        ctcATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAg                                                               <  2:2105251/150‑1 (MQ=255)

                                                                                         tcATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTAATTCGCTTGTACAAGATAACTCGTGCATTGGTTATAAGCGGCGAACGCGGGCCTGCCGGAAgg                                                              >  1:6899616/1‑150 (MQ=255)

                                                                                           aTGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTc                                                            >  2:7692970/1‑150 (MQ=255)

                                                                                                 gctgcgctgGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACt                                                      >  2:7786217/1‑150 (MQ=255)

                                                                                                  ctgcgctgGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTTCGGCC‑CCCCCCAGGGTAAAGGTACTTCGCTTTTAAATTATAAAAAGTGCAATTGTTATCAGCGGCGAACCCGGGCCAGCAGGAAGGTCAGCaaat                                                     >  1:8196362/1‑147 (MQ=255)

                                                                                                    gcgctgGGACATCTGGTTGGCGCAGCCGCTGACGAGCTGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCa                                                   <  2:5542005/150‑1 (MQ=255)

                                                                                                    gcgctgGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCa                                                   <  2:645660/150‑1 (MQ=255)

                                                                                                    gcgctgGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACACTGCGGCG‑CCCCCCAGGGTAAAGGTACTTAGCGTGTACATTATCAATAGTGCATTGGTTATAAGCGGCGAACCCCGGCCTGCAGGAAGGTCAGCAcaaga                                                   >  1:267897/1‑146 (MQ=255)

                                                                                                     ggctgGTACATGTGGTTGGCGCCGCCGCTGACGAGCAGGGCCCCGCACAGTGCGGCGCCCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCa                                                   <  1:4803846/149‑1 (MQ=255)

                                                                                                      gctgGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCAtt                                                 <  1:6544526/150‑1 (MQ=255)

                                                                                                          ggACTTCTGTTTGGCGCCGCGGGTGACGCGCTGGGCGCCGCACTGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGc                                             <  1:2945460/150‑1 (MQ=255)

                                                                                                            aCATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCgg                                           >  2:2856476/1‑150 (MQ=255)

                                                                                                            aCATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCgg                                           >  2:8693436/1‑150 (MQ=255)

                                                                                                              aTCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCGTGTACATGATCACTCGTGCAGTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCa                                         >  2:5447249/1‑150 (MQ=255)

                                                                                                                    ttGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCt                                   >  2:8549859/1‑150 (MQ=255)

                                                                                                                      ggCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTgg                                 <  2:7576979/150‑1 (MQ=255)

                                                                                                                        cgcAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGc                               >  2:7072495/1‑150 (MQ=255)

                                                                                                                           aGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAATGGTGCGTCGCGTGTACATGCGGACTCGTGCAGTGGGTATCAGCGGCGACCGCGGGCCTGCAGGAAGGTCAGCCCGTCAGTGAGCGGCACCGCCTGGGCGTc                            >  2:2052701/1‑150 (MQ=255)

                                                                                                                             ccGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCt                          <  1:466599/150‑1 (MQ=255)

                                                                                                                                 tGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCCAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCTGCTc                      >  2:5843884/1‑150 (MQ=255)

                                                                                                                                  gACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCTGCTcg                     <  2:6532665/150‑1 (MQ=255)

                                                                                                                                  gACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCTGCTcg                     <  1:3270058/150‑1 (MQ=255)

                                                                                                                                     gAGCAGGGCGCCGCCCAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGGTATCAGCGGCGAACGCCGGCCTGCAGGAAGGTCAGCCCGTCATTTAGCGGCAACGCCTGGGCGTCCAGCTaggtg                  >  2:4761577/1‑150 (MQ=255)

                                                                                                                                     gAGCAGGGCGCCGCACCGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCTGCTcggtg                  <  2:804885/150‑1 (MQ=255)

                                                                                                                                      ttgggggCGCCGCACTGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCTGCTcggtgc                 >  1:3530035/5‑150 (MQ=255)

                                                                                                                                      aGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGCACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCTGCTcggtgc                 <  1:5546320/150‑1 (MQ=255)

                                                                                                                                       gCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCTGCTcggtgcg                >  2:5741041/1‑150 (MQ=255)

                                                                                                                                       gCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCTGCTcggtgcg                >  2:434866/1‑150 (MQ=255)

                                                                                                                                             cgccgcACCGTGCGGCG‑CCCCCACGGGTAAAGGTACTTCGCTTGTACATGATCACTCGAGCATTGGGTCTCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCTGCTCGGTGCGGTGCtt          <  2:8571506/150‑1 (MQ=255)

                                                                                                                                             cgccgcACCGTGCGGCG‑CCCCCAAGGGTAAAGGTACTGCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCTGCTCGGTGCGGTGCtt          <  2:2345561/150‑1 (MQ=255)

                                                                                                                                             cgccgcACAGTGCGGCG‑CCCCCCAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCTGCTCGGTGCGGTGCtt          <  1:2007914/150‑1 (MQ=255)

                                                                                                                                             cgccgcACAGTGCGGCG‑CCCCCACGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGGTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCTGCTCGGTGCGGTGCtt          <  2:4499732/150‑1 (MQ=255)

                                                                                                                                                cgcACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATGTCTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCTGCTCGGTGCGGTGCTTGTa       <  2:7236121/150‑1 (MQ=255)

                                                                                                                                                cgcACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCTGCTCGGTGCGGTGCTTGTa       >  1:772084/1‑150 (MQ=255)

                                                                                                                                                cgcACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCTGCTCGGTGCGGTGCTTGTa       <  2:4098359/150‑1 (MQ=255)

                                                                                                                                                cgcACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCTGCTCGGTGCGGTGCTTGTa       >  2:3896233/1‑150 (MQ=255)

                                                                                                                                                     aGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCTGCTCGGTGCGGTGCTTGTACTCCa  <  2:1124566/150‑1 (MQ=255)

                                                                                                                                                     aGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCTGCTCGGTGCGGTGCTTGTACTCCa  <  2:8335152/150‑1 (MQ=255)

GCACACGTCGCTGCGGAAGCTCCATCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCG‑CCCCCAAGGGTAAAGGTACTTCGCTTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCTGCTCGGTGCGGTGCTTGTACTCCA  >  NC_002947/1388060‑1388358

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`