| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,644,577 | A→G | 5.3% | intergenic (‑176/‑135) | czcR‑III ← / → PP_1439 | response regulator/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,644,577 | 0 | A | G | 5.3% | 856.8 / 23.7 | 286 | intergenic (‑176/‑135) | czcR‑III/PP_1439 | response regulator/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (162/96); new base G (7/8); total (170/116) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.75e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.32e-02 | |||||||||||
Only 100 of 291 total aligned reads displayed.
CGATTCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCAAA > NC_002947/1644428‑1644726 | cGATTCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGaa < 2:2610267/150‑1 (MQ=255) gATTCTTGACCCTGTAGTGACATCAGTGTCAAGCGCACCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAAc < 1:3205514/150‑1 (MQ=255) ttCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACgg < 2:2037058/150‑1 (MQ=255) ttCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACgg > 2:2127834/1‑150 (MQ=255) tCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACggg < 1:1026449/150‑1 (MQ=255) tCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACggg < 2:4504856/150‑1 (MQ=255) ttGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑tt > 1:126572/1‑150 (MQ=255) ttGACCCTGATGTCACTACAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑tt > 2:4452529/1‑150 (MQ=255) ttGACCCTGATGTCACTACAGGGTCAAGAGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATATGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTCTAGGAACGGG‑tt > 2:5406291/1‑150 (MQ=255) tGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGGGTAAACCCGTTCCTACAGGCGCGGG‑ttt < 2:4726938/150‑1 (MQ=38) tGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑ttt < 2:1874488/150‑1 (MQ=255) gACCCTGATGTCACTACAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTa > 1:4211547/1‑150 (MQ=255) cccTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTAcc < 2:17512/150‑1 (MQ=255) ccTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTAccc > 2:7925017/1‑150 (MQ=255) ccTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTAccc > 2:283311/1‑150 (MQ=255) tGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCcgc < 2:649125/150‑1 (MQ=255) tGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCcgc < 2:1137851/150‑1 (MQ=255) aGTGACATCAGTGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACTGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGGGTAAACCCGTTCCTACAGGCTCGGG‑TTTACTCGCGaa < 2:365214/150‑1 (MQ=25) gACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAagag < 2:2324684/150‑1 (MQ=255) aTCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGcc > 1:6471483/1‑150 (MQ=255) ggacAAGCGCCCAAATGTAACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAAc < 2:7725767/147‑1 (MQ=255) gTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACa < 2:5562077/150‑1 (MQ=255) cAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGt < 1:8031147/150‑1 (MQ=255) ccccAATGTTACGGCAGGAAAAATGGCCTGCGGTGCATATAACGGTTTTGTATTTCTGCTGTTTTCTGGCTGTCTGTTCGGGCCTCTTCGCTAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCTAAGAGGCCCGAACAGTCcacac < 2:7432982/150‑1 (MQ=255) cccAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCcacaca > 1:217443/1‑150 (MQ=255) aaTGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAgg > 1:5058801/1‑150 (MQ=255) aaTGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTAACCGCGAAGAGGCCCGAACAGTCCACACAAgg > 1:1884330/1‑150 (MQ=255) gCATGAAAAAAGGCCTGCGGTGCAGATACCGGATTTGTATTTCTGCGGTTTTCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGACCGGG‑TTTACCCGCGAAGTGGCCCGAACAGTCCACACAAGGCCACATTGc < 1:7947395/150‑1 (MQ=255) gCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGc < 2:2728173/150‑1 (MQ=255) gAAAAAAGGCCTGCGGTGCAGATAACGGTTTGTTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGa < 2:7685476/150‑1 (MQ=255) aaaatGGCCTGCGGTGCAGATAACGGATTTTTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAAGGGG‑TTTACCCGCTAAGAGGTCCGAACAGTCCACACAAGGCCACATTGCAGGACt < 1:656794/150‑1 (MQ=255) aaaaGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTg < 2:1436012/150‑1 (MQ=255) aaaGGCCTCCGGAGCAGATAACGGATTAGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGCG‑TTTAACCGCGAAGAGGCCCGAACAGTCCACACAAGCCCACATAGCAGGACTGt > 2:718395/1‑150 (MQ=38) cTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATccc > 2:4329939/1‑150 (MQ=255) tGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAAACCGCGCCTGTAGGAACGGG‑TTTTACCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACAATGCAGGACTGTAATaccc > 1:4389666/1‑150 (MQ=39) gATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCt > 2:8386785/1‑150 (MQ=255) aTACCGTATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCATCTTCGCGTGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCTAATAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCtt < 1:4986399/150‑1 (MQ=255) aCGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGcc < 1:2112057/150‑1 (MQ=255) aCGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGcc < 2:6384190/150‑1 (MQ=255) ggATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCACTTCGCGAGTAAAACCCCGCCGGTAGGAACGGG‑TTTAACCCCGAAGAGGCCCCAACAGTCCACACAAGGCCACAATGCAGGACTGTAATACCCCCCACACCATTCCGt > 1:342645/1‑150 (MQ=255) gATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGACCGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGtt < 1:7826105/150‑1 (MQ=255) gATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGtt > 2:888295/1‑150 (MQ=255) tttttTAATTCTGCTGTTATCTGTCTGTGTGTTGGGGCCTTTAAGCGCGTAATCCCGGGCGTTTAGGAAGGGG‑TTTACCCGCTACTAGGCCCTAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTa < 1:3604642/149‑1 (MQ=255) aTTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTa < 2:2063213/150‑1 (MQ=255) ttGTAATTCTGCTGTTATCTGGCTGTCTGATCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTagc < 2:5861410/150‑1 (MQ=255) aTTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTagccagcc < 2:855617/150‑1 (MQ=255) aTTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACAGTAATCCCCGCCTCACCTTGCCGTTagccagcc > 2:331755/1‑150 (MQ=255) ctgctgTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGGACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTc > 2:4222214/1‑150 (MQ=255) ctgctgTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTc > 2:7334411/1‑150 (MQ=255) tgctgTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCg > 2:5632403/1‑150 (MQ=255) tgTTCTCTGGCGGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTa < 2:5460132/150‑1 (MQ=255) tgTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTa > 2:6207067/1‑150 (MQ=255) tgTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTa < 2:5087137/150‑1 (MQ=255) tgTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCAAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTa > 2:4833774/1‑150 (MQ=255) ttCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGAt < 2:344354/149‑1 (MQ=255) tCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATg < 2:7030851/150‑1 (MQ=255) tGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGc > 2:5195639/1‑150 (MQ=255) ggCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCGGTTGGAACCGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGcc > 1:890355/1‑150 (MQ=255) ctgtctgtTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCgt > 1:5640612/1‑150 (MQ=255) ctgtctgtTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCgt < 1:7216555/150‑1 (MQ=255) tgtctgtTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCgtg > 2:6696066/1‑150 (MQ=255) tttttCGGGCCTATTCGCGATTAAACCGGCGCCTGTTGTACGGGT‑TTTACCCGCTAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCTGTGTCt < 1:1138714/147‑1 (MQ=255) gtTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGa > 1:2677510/1‑150 (MQ=255) ttCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACAATGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCGAGGATGGCCGTGTCTGAt > 2:4084702/1‑150 (MQ=255) ggCCTCTTCGCGAGAAAACCCGCGCCTTTAGGAAGGGT‑TTTACCCGCGATGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGt < 1:5984826/150‑1 (MQ=255) cccctTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGtta < 1:6114605/147‑1 (MQ=255) tctTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGttatt > 1:259535/1‑150 (MQ=255) tctTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGttatt > 1:2883969/1‑150 (MQ=255) ttCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTCGGATGGCCGTGTCTGATCGGTTATTAc > 1:8720355/1‑150 (MQ=255) ttCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTAAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGGTATTAc > 2:1335117/1‑150 (MQ=255) tCGCGAGTAACCCCGCGCCTGTCGTACCGGG‑TTTACCCGCGACGAGCCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACg < 1:3883782/150‑1 (MQ=255) tCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACg > 1:7374120/1‑150 (MQ=255) tCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACg > 1:5469141/1‑150 (MQ=255) tCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTAGTACg > 2:8165135/1‑150 (MQ=255) cgccAGAAACCCCGCGCCGGTCGGAACGGT‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGa < 1:4727205/150‑1 (MQ=255) gcgAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAg > 1:6769890/1‑150 (MQ=255) gAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGc > 1:524112/1‑150 (MQ=255) gAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGc > 2:105548/1‑150 (MQ=255) gAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCCCGAAGAGCCCCGAACAGACCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTGGCCGTTAGCCAGCCCTCCCTCGGATGGCCGTGTCTGATCGGTTATTACGCGGc > 1:6650133/1‑150 (MQ=255) aaCCCGCGCCTGTAGGACCGGG‑TTTACCCGCTAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAaca < 1:457458/150‑1 (MQ=255) aCCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAacac > 1:1597751/1‑150 (MQ=255) cccGCGCCTGTAGGAACGGG‑TTTACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACg > 1:7036350/1‑150 (MQ=255) cccGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACg < 2:4601051/150‑1 (MQ=255) ccGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGa > 1:4666661/1‑150 (MQ=255) ccGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGa > 2:8572600/1‑150 (MQ=255) ccGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGa > 2:7536077/1‑150 (MQ=255) cgcgCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGAt < 1:8641362/150‑1 (MQ=255) cgcgCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGAt > 1:6756200/1‑150 (MQ=255) cgcgCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGAt < 2:3303743/150‑1 (MQ=255) cgcgCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGAt > 1:8367358/1‑150 (MQ=255) gcCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGaa > 2:8067939/1‑150 (MQ=255) cTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCATGTCTGATCGGTTATTACGAGGCAAACACGATGAAcc > 1:2022261/1‑150 (MQ=255) tGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCt > 1:544264/1‑150 (MQ=255) tGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCt > 1:4880685/1‑150 (MQ=255) gTAGGAACGGG‑TTTACCCGCGAAGAGGCCTGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTg > 2:1261310/1‑150 (MQ=255) agtaaCGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGAc < 1:8524233/147‑1 (MQ=255) aGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGAc < 2:4060813/150‑1 (MQ=255) agtaCGGGTTTTACCCGCTAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGAc < 1:5132961/147‑1 (MQ=255) gAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCa > 2:5279458/1‑150 (MQ=255) gAACGCT‑TTTACCAGCGAATAGGCCCGAACAGTCCAAACAAGGCCACATTGCAGGAAACTAATCCAAGCCTCACCTAGACGATAGCCAGCAAACGCTAGTATGGCCGAGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGAcaa > 1:8238214/1‑148 (MQ=255) | CGATTCTTGACCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGTAAACCCGCGCCTGTAGGAACGGG‑TTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCAAA > NC_002947/1644428‑1644726 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |