| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,682,620 | A→G | 7.3% | intergenic (+22/‑109) | thrC → / → PP_5471 | threonine synthase/two‑component system response regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,682,620 | 0 | A | G | 7.3% | 867.5 / 38.6 | 297 | intergenic (+22/‑109) | thrC/PP_5471 | threonine synthase/two‑component system response regulator |
| Reads supporting (aligned to +/- strand): ref base A (136/131); new base G (7/14); total (143/154) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.73e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.65e-01 | |||||||||||
Only 100 of 309 total aligned reads displayed.
CGCTGGAGCTACCCGCGCACCTCAGCGACCTGTTCAGCCGTGAAGAGCGTTGCACGGTCCTGGCCAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCGGTCCTCCCATCAGGAGCGGCTCATGCACCAGCCCTATGTGTTGATTCACCAGGCTCGCCCAT > NC_002947/1682471‑1682768 | cgcTGGAGCTACCCGCGCACCTCAGCGACCTGTTCAGCCGTGAAGAGCGTTGCACGGTCCTGGCCAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTgca > 1:3877225/1‑150 (MQ=255) tGGAGCTACCCGCGCACCTCAGCGACCTGTTCAGCCGTGAAGAGCGTTGCACGGTCCTGGCCAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTgcagcg > 2:5967705/1‑150 (MQ=255) gtgCTACCCGCGCACCTCAGCGACCTGTTCAGCCGTGAAGAGCGTTGCACGGTCCTGGCCAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTgcagcgca < 1:4111124/148‑1 (MQ=255) gAGCTACCCGCGCACCTCAGCGACCTGTTCAGCCGTGAAGAGCGTTGCACGGTCCTGGCCAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTgcagcgca < 1:5496299/150‑1 (MQ=255) tACCCGCGCACCTCAGCGACCTGTTCAGCCGTGAAGAGCGTTGCACGGTCCTGGCCAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCGCTGCAGccc < 1:7453766/150‑1 (MQ=255) tACCCGCGCACCTCAGCGACCTGTTCAGCCGTGAAGAGCGTTGCACGGTCCTGGCCAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCGCTGCAGccc < 2:4046097/150‑1 (MQ=255) ccGCGCACCTCAGCGACCTGTTCAGCCGTGAAGAGCGTTGCACGGTCCTGGCCAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCaa > 2:7313159/1‑150 (MQ=255) cgcgCACCTCAGCGACCTGTTCAGCCGTGAAGAGCGTTGCACGGTCCTGGCCAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCGCTGCAGCCCCaaa < 1:1892806/150‑2 (MQ=255) cgcgCACCTCAGCGACCTGTTCAGCCGTGAAGAGCGTTGCACGGTCCTGGCCAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCGCTGCAGCCCCaaa < 2:5524234/150‑2 (MQ=255) cgcgCACCTCAGCGACCTGTTCAGCCGTGAAGAGCGTTGCACGGTCCTGGCCAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAAc < 2:5038148/150‑1 (MQ=255) cgcgCACCTCAGCGACCTGTTCAGCCGTGAAGAGCGTTGCACGGTCCTGGCCAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCG‑TTGGGGCTGCGCTGCAGCCCCaaac < 1:4706368/150‑3 (MQ=255) gcgcACCTCAGCGACCTGTTCAGCCGTGAAGAGCGTTGCACGGTCCTGGCCAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCGCTGCAGCCCCaaac < 1:5980983/150‑3 (MQ=255) cACCTCAGCGACCTGTTCAGCCGTGAAGAGCGTTGCACGGTCCTGGCCAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGtct > 2:4312482/1‑150 (MQ=255) ccTCCGCGACCTGTTCCGCCGTTAAGAGGGTTGCACGGTCCTGGCCAACGACCTGATGGCTGTACAGGGATTTGTAAGCCAGCAGGGCAACCGGGGAAAGCGGCTTTAATTGCTTGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCa < 2:739521/150‑1 (MQ=255) ccTCAGCGACCTGTTCTGCGGTGAAGAGCTTTGCAGGGTCGTGGCCAACTACCTTAAGGCTGTACTGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTATTTGATTGGGGTTTGGGGCTGCTGGGCAGCCCCAACGTCTCa < 2:816335/150‑1 (MQ=255) tCAGCGACCTGTTCAGCCGTGAAGAGCGTTGCACGGTCCTGGCCAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGc > 1:1259472/1‑150 (MQ=255) cAGCGACCTGTTCAGCCGTGAAGAGCGTTGCACGGTCCTGGCCAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGcc > 1:5561001/1‑150 (MQ=255) aGCGACCTGTTCAGCCGTTAAGAGCGTTGCACGGTCCTGGCCAACGACCTTAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGAAACCGCGGCAAGCCGCTTTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCt < 2:7025129/150‑1 (MQ=255) aGCGACCTGTTCAGCCGTGAAGAGCGTTGCACGGTCCTGGCCAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCt > 1:1684788/1‑150 (MQ=255) cccaCCTGTACAGCCGTGAAGAGCGTGGCACGGTCCTGGCCAACGCCCTGACGGCTTTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCACGCCGCTGGAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCtt < 2:1791273/147‑1 (MQ=255) gACCTGTTCAGCCGTGAAGAGCGTTGCACGGTCCTGGCCAACGACCTGACGGGTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCtttt < 2:2117761/150‑1 (MQ=255) gACCTGTTCAGCCGTGAAGAGCGTTGCACGGTCCTGGCCAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCtttt < 2:3589449/150‑1 (MQ=255) ccTGTTCAGCCGTGAAGAGCGTTGCACGGTCCTGGCCAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTcc > 1:4078398/1‑150 (MQ=255) cTGTTCAGCCGTGAAGAGCGTTGCACGGACCTGGCCAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTccc < 2:4479721/150‑1 (MQ=255) gTTCTGCCGTGAAGAGCGTTGCACGGTCCTGGCCACCGACCTGATGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCGGCTGTTATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCATCGTCTCAGCCTTTTCcctc < 2:6468941/150‑1 (MQ=255) gTTCAGCCGTGAAGAGCGTTGCACGGTCCTGGCCAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCcctc > 1:148992/1‑150 (MQ=255) ttCAGCCGTGAAGAGCGTTGCACGGTCCTGGCCAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCcctcc > 1:2669525/1‑150 (MQ=255) gCCGTGAAGAGCGTTGCACGGTCCTGGCCAACGACCTGAGGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGAAAGCCGATGTAATTGCTTGGGGTTTGGGGATGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTc < 2:850739/150‑1 (MQ=255) gCCGTGAAGAGCGTTGCACGGTCCTGGCCAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTc < 2:3502920/150‑1 (MQ=255) gCCGTGAAGAGCGTTGCACGGTCCTGGCCAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTc < 2:5731194/150‑1 (MQ=255) ccGTGAAGAGCGTTGCACGGTCCTGGCCAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCt > 1:111449/1‑150 (MQ=255) cGTGAAGAGCGTTGCACGGTCCTGGCCAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTa > 1:452741/1‑150 (MQ=255) gTGAAGAGGGTTGCACGGTCCTGGCCAACGACCTGATGGCTTTACTGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTATTTGCATGGCTTTTGGGGCTGCAGCGCACCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTAt < 1:7513323/150‑1 (MQ=255) tGAAGAGCGTTGCACGGTCCTGGCCAACGACCTGAAGGCTGTACAGGGATTTGTCAGCCAGCACGGCAACCGCGGAAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATc < 1:3529420/150‑1 (MQ=255) gAAGAGCGTTGCACGGTCCTGGCCAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCATTTCCCTCCTGTCTATCa > 1:6067578/1‑150 (MQ=255) aaGAGCTTTGCACGGTCCTGGCCAACTACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAg < 2:2037287/150‑1 (MQ=255) agCGTTGCACGGTCCTGGCCAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGaaa > 1:4255201/1‑150 (MQ=255) agCGTTGCACGGTCCTGGCCAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGaaa > 1:3385165/1‑150 (MQ=255) ttGCAGGGTCCTGGCAAACGACCTGATGGTTGTACTGGGATTTTTCAGCCAGCACGGCAACCGGGGAACGCCGCTTTATTTGCTTGGCTTTTGGGGCTGCAGCGCAGCCCAAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATc < 1:8121945/150‑1 (MQ=255) ttGCACGGTCCTGGCCAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATc > 1:4981825/1‑150 (MQ=255) ttGCACGGTCCTGGCCAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATc > 2:6121795/1‑150 (MQ=255) gCACGGTCCTGGCCAACGACCTGAAGGCTGTACTGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTTTATTTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCt < 2:3652011/150‑1 (MQ=255) cACGGTCCTGGCCAACTACCTGAAGGCTTTACTGGGCTTTGTCAGCCAGCACGGCAACCGGGGCAAGCCGCTTTAATTGCTTGGGTTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTa < 1:7671195/150‑1 (MQ=255) tCCTGGCCAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAg > 2:7126729/1‑150 (MQ=255) ccAACGACCTGAAGGCTTTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTATTTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGcc < 2:2259905/150‑1 (MQ=255) ccAACGACCTGAAGGCTGTACTGGGCTTTGTCAGCCAGCACGGCAACGGCGGCAAGCCGCTTTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGcc < 1:5367682/150‑1 (MQ=255) cAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCg > 2:4990248/1‑150 (MQ=255) cAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCg > 2:4167356/1‑150 (MQ=255) aaCGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCgg > 2:3321674/1‑150 (MQ=255) cGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTATTTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGgc < 2:2377729/150‑1 (MQ=255) ccTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTa < 2:6567207/132‑1 (MQ=255) cTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCa > 2:4878648/1‑150 (MQ=255) tGACGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCaa < 1:7044096/150‑1 (MQ=255) tGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGTCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCaa > 1:2008752/1‑150 (MQ=255) tGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCaa < 1:7969577/150‑1 (MQ=255) gCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCTTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATa < 1:1013559/150‑1 (MQ=255) gCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATa > 1:917583/1‑150 (MQ=255) tGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATaaa > 2:2479640/1‑150 (MQ=255) tGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCGGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATaaa < 1:6484228/150‑1 (MQ=255) aGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGc < 2:3299090/150‑1 (MQ=255) aGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGc > 1:3462043/1‑150 (MQ=255) gggCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTTTAATTGCTTGGCGTTTGGGGCTGCAGCGCAGCCCAAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGcc < 1:7361561/150‑1 (MQ=255) gggCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTACTCAGCCTGCCGGGCGCCAAGCATAAATTAGcc > 2:2579969/1‑150 (MQ=255) ggCTTTGTCAGCCAGCACGGCAACCGCGGCAAGTCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCg > 2:2831205/1‑150 (MQ=255) ggCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCg < 2:7975288/150‑1 (MQ=255) gCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCgg > 1:6632716/1‑150 (MQ=255) cTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTCGCCGGt < 2:4505797/150‑1 (MQ=255) cTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTATCCGGt > 1:5186359/1‑150 (MQ=255) tttGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCGGtc > 1:3789720/1‑150 (MQ=255) gTCAGCCAGCACGGAAACCGGGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCCGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCGGtcctc < 1:4390403/150‑1 (MQ=255) gccagcACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCGGTCCTCCCAt < 2:6948750/150‑1 (MQ=255) gccagcACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCGGTCCTCCCAt > 2:5096114/1‑150 (MQ=255) cagcACGGCAACCGCGGCAAGCCGCTGTAATTGCATGTCGTTTGGGGCTGCAGCGCAGCCCCATCGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCGGTCCTCCCATCa < 2:5600051/150‑1 (MQ=255) cACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCGGTCCTCCCATCAGGa > 1:2331735/1‑150 (MQ=255) aCGGCAACCGCGGCAAGCCGCTGTAATTGCTTGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCGGTCCTCCCATCAGGAg < 2:7217691/150‑1 (MQ=255) aCGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCAAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCGGTCCTCCCATCAGGAg < 2:1060731/150‑1 (MQ=255) cGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCGGTCCTCCCATCAGGAGc > 1:7797111/1‑150 (MQ=255) ccGCGGCAAGCCGCTTTATTTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCGGTCCTCCCATCAGGAGCGGCTCa < 1:1160102/150‑1 (MQ=255) ccGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCGGTCCTCCCATCAGGAGCGGCTCa < 2:4759765/150‑1 (MQ=255) cgcgGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCGGTCCTCCCATCAGGAGCGGCTCAt < 2:3877225/150‑1 (MQ=255) cgcgGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACAGCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCGGTCCTCCCATCAGGAGCGGCTCAt > 2:4539852/1‑150 (MQ=255) cAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCGGTCCTCCCATCAGGAGCGGCTCATGCAcc < 1:3630475/150‑1 (MQ=255) gCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCGGTCCTCCCATCAGGAGCGGCTCATGCACCAGc > 2:2949061/1‑150 (MQ=255) gTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCGGTCCTCCCATCAGGAGCGGCTCATGCACCAGCCCTAtg < 1:6750645/150‑1 (MQ=255) tAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCGGTCCTCCCATCAGGAGCGGCTCATGCACCAGCCCTAtgt < 2:1551688/150‑1 (MQ=255) aTTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCGGTCCTCCCATCAGGAGCGGCTCATGCACCAGCCCTAtgtcc > 2:3855251/1‑148 (MQ=255) aTTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCGGTCCTCCCATCAGGAGCGGCTCATGCACCAGCCCTATgtgt < 1:4884624/150‑1 (MQ=255) ttGCATGGCTTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCGGTCCTCCCATCAGGAGCGGCTCATGCACCAGCCCTATGTGtt < 1:8441234/150‑1 (MQ=255) gCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCGGTCCTCCCATCAGGAGCGGCTCATGCACCAGCCCTATGTGTTGa > 1:2489360/1‑150 (MQ=255) tGGGGTTTGGGGCTGCTGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCGGTCCTCCCATCAGGAGCGGCTCATGCACCAGCCCTATGTGTTGATTc < 1:3892653/150‑1 (MQ=255) gTTTGGGGGTGCTGCGCTGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCATGCATAAATTAGCCGGTCCTCCCATCAGGAGCGGCTCATGCACCAGCCCTATGTGTTGATTCACCa < 1:5135232/150‑1 (MQ=255) gTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCGGTCCTCCCATCAGGAGCGGCTCATGCACCAGCCCTATGTGTTGATTCACCa > 2:1186120/1‑150 (MQ=255) ttGGGGCTGCGCTGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCGGTCCTCCCATCAGGAGCGGCTCATGCACCAGCCCTATGTGTTGATTCACCggg > 1:8671766/1‑150 (MQ=255) ggggCTGCGCTGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCGGTCCTCCCATCAGGAGCGGCTCATGCACCAGCCCTATGTGTTGATTCACCAGGCt > 2:7647370/1‑150 (MQ=255) gggCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCGGTCCTCCCATCAGGAGCGGCTCAt > 1:3107152/1‑118 (MQ=255) gggCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCGGTCCTCCCATCAGGAGCGGCTCAt < 2:3107152/118‑1 (MQ=255) gggCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCGGTCCTCCCATCAGGAGCGGCTCATGCACCAGCCCTATGTGTTGATTCACCAGGCTc > 2:6788548/1‑150 (MQ=255) gggCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTAGTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCGGTCCTCCCATCAGGAGCGGCTCATGCACCAGCCCTATGTGTTGATTCACCAGGCTc > 2:3945042/1‑150 (MQ=255) tGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCGGTCCTCCCATCAGGAGCGGCTCATGCACCAGCCCTATGTGTTGATTCACCAGGCTCGccc > 2:5277562/1‑150 (MQ=255) cagcgcagcCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCGGTCCTCCCATCAGGAGCGGCTCATGCACCAGCCCTATGTGTTGATTCACCAGGCTCGgccgg > 2:3749093/1‑148 (MQ=255) | CGCTGGAGCTACCCGCGCACCTCAGCGACCTGTTCAGCCGTGAAGAGCGTTGCACGGTCCTGGCCAACGACCTGAAGGCTGTACAGGGCTTTGTCAGCCAGCACGGCAACCGCGGCAAGCCGCTGTAATTGCATGGCGTTTGGGGCTGCAGCGCAGCCCCAACGTCTCAGCCTTTTCCCTCCTGTCTATCAGAAACATCCTATTCAGCCTGCCGGGCGCCAAGCATAAATTAGCCGGTCCTCCCATCAGGAGCGGCTCATGCACCAGCCCTATGTGTTGATTCACCAGGCTCGCCCAT > NC_002947/1682471‑1682768 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |