| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,708,248 | A→T | 6.3% | intergenic (+106/‑61) | lysS → / → PP_1497 | lysine‑‑tRNA ligase/TetR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,708,248 | 0 | A | T | 6.3% | 931.1 / 3.2 | 322 | intergenic (+106/‑61) | lysS/PP_1497 | lysine‑‑tRNA ligase/TetR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (209/73); new base T (11/15); total (220/102) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.21e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 329 total aligned reads displayed.
TCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCC > NC_002947/1708099‑1708396 | tCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGCCT‑TTGTa < 1:4600065/150‑1 (MQ=255)tCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAAGGCC‑TTGTa < 2:5171613/150‑1 (MQ=255)tCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAAGGCC‑TTGTa < 1:7647116/150‑1 (MQ=255)tCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAAGGCC‑TTGTa < 1:2795315/150‑1 (MQ=255)tCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAAGGCC‑TTGTa < 1:5405739/150‑1 (MQ=255) gcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGCCT‑TTGTAGGa < 2:3105741/150‑1 (MQ=255) gcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGCCT‑TTGTAGGa < 1:7861490/150‑1 (MQ=255) gcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGCCT‑TTGTAGGa < 2:7350247/150‑1 (MQ=255) gcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGa > 2:6533209/1‑150 (MQ=255) gACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGc < 1:1485782/150‑1 (MQ=255) gACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCCCTTCGC‑GGGTAAACCCGCTCCTACAAGGCCT‑TTGTAGGAGc < 1:7159243/150‑1 (MQ=255) cGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCTCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑gg < 1:7507363/150‑1 (MQ=255) cGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑gg < 1:1730446/150‑1 (MQ=255) cGTCATCCTGGTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTGCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGCCT‑TTGTAGGAGC‑gg < 1:2177394/150‑1 (MQ=38) gTCATCCTGTTCCCGCACATTCTTCCGCAGGCCTGAGTGAGCTGAACGATCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACAGGCCTCTTCGC‑GGGTAAACCCTCTCCTACAAAGGCC‑TTGTAGGAGC‑ggg < 2:1874653/150‑1 (MQ=39) gTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑ggg > 2:3473298/1‑150 (MQ=255) gTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑ggg > 1:8668141/1‑150 (MQ=255) gTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑ggg < 2:4776374/150‑1 (MQ=255) tCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGt > 1:7970142/1‑150 (MQ=255) aTCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGGCCT‑TTGTAGGAGc < 1:4250265/144‑1 (MQ=255) aTCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTGTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGttt > 2:7296971/1‑150 (MQ=255) tCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGGTAAACCC‑CGCCAACACAGGCC‑GTGTTGGGGC‑GGGtttt > 1:7578537/1‑149 (MQ=255) tCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCACCAACAAAGGCC‑TTGTAGGAGC‑GGGTTTa > 2:3898294/1‑150 (MQ=255) ccTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAAGGCC‑GTGTAGGAGC‑GGGTTTAc > 2:6275729/1‑150 (MQ=255) tGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTAccc > 2:8049021/1‑150 (MQ=255) ccGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAAGGCC‑GTGTAGGAGC‑GGGTTTACCCGCGaa > 2:3262557/1‑150 (MQ=255) acctGCGCCCGCCGGCCTGTGTCCGCTGACCGCGCCGCCTTTCGCGGCGGCTTTTTCTGGCCTGAAGATTTTTGTTGTCTTTACGGGCCTCTTCGG‑GGTTAACCCCGCTCCTACACGCCCT‑TTGTTGGAGC‑GGGTTTACCCGCGAAgagg < 2:2213456/147‑1 (MQ=12) gCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAg > 2:7185920/1‑150 (MQ=255) gCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAAACCCCAACAAAAAACGCC‑GTGTAGGAGC‑CGGTTTAACCCCCAACGGGCCACCACCTACGaa > 1:8517944/1‑150 (MQ=255) ccTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCGACAAAGGCC‑ATGTATGAGC‑GGGTTTAACCCCGAAGGGGCCAGCACAGACGaaa > 1:2870104/1‑150 (MQ=38) cTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTTAAACCGCTCCAAAAAATGCC‑AAGTAGGTGCGGGGTTTACCC‑CGGAGGGGCCAGCACAGACGAAac > 1:6274893/1‑150 (MQ=255) agtgagCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGACAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAACGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACAcc < 2:2845376/150‑1 (MQ=255) gccgccTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGTTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGTTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATcc < 2:5804902/150‑1 (MQ=255) gccgccTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATcc > 2:7709899/1‑150 (MQ=255) ccgccTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAAGGCC‑GTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATccc > 2:1442712/1‑150 (MQ=255) cgccTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACACAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGCAACACCCCCATGAGGTATcccc > 2:5956820/1‑150 (MQ=255) gccTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATccccc > 2:6772772/1‑150 (MQ=255) gccTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGGTAATCCGCGCCGAAAAAAGGC‑GTTTATGTGCGGGGTTTGCCCCCCACGGGGCC‑GCCCGGACCGCACAACCCCCAGAGGGATccccc > 1:4787815/1‑150 (MQ=255) ccTTTCGTGGGGGCTTTTTCTTGCCTGAAGCTTTTTGTTGTCTGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGTGC‑GGTTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCg < 2:1991494/150‑1 (MQ=37) ccTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTTAACCCCCACCGACAAAAGGC‑GTGTTGGGGC‑GGGTTTAAACCCGAACGGGCCCGCACAGACGAAAAACCCCCAAAAGGTAAgccccc > 1:993868/1‑149 (MQ=255) tCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCGCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACAGACGAAACACCCCCATGAGGTATCCCCCGTGac > 1:6545959/1‑150 (MQ=255) gAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCCCGCCGACAAAGGCC‑GGGTAGGAGC‑GGGGTTACCCGCGCAGGGGCCCGCACAGACCCAACACCCCCAAGAGGGATACCCCGGGacac > 1:3549876/1‑150 (MQ=25) gcTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAAGGCC‑GTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGccc > 1:8000168/1‑149 (MQ=255) cTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAg > 2:1262357/1‑150 (MQ=255) tGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAAGGCC‑GTGTAGGAGC‑GGGTTTACCCCCGAAGGGGCCAGCACTGACGAAAACCCCCCATGAGGTATCCCCCGTGACACCCGCCCAGCCTGACCAAgg > 1:5855843/1‑150 (MQ=37) tGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCCCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACAGACGAAACACCCCCATGAGGTATCCCCCGTGAAACCCCCCATGCCTGACCAAgg > 2:3404932/1‑150 (MQ=255) tGAAGCTTTATGTGGACCGTCCCGCCCTCTTCGC‑GGGTAAACCCGCTCCTCCACCGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAgg < 2:5263225/150‑1 (MQ=37) gAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAATGCC‑TTGGAGGAGC‑GGGTTTACCCGCGCAGGGGCCCGCACTGACGAAACACCCCCCAGTGGGATCCCCCCTGACACCCGCCCAGCCTGGCCAAGgc > 2:818275/1‑150 (MQ=25) aTGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAACGGCC‑TTGTTGGCGG‑GGTTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCgg < 1:7259982/150‑1 (MQ=38) ttgtCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAAGGCC‑TTGTTGGATC‑GGGTTTACCCCCGGAGGGGCCAGCACTGACGAAACACCCCCATGTGGTATGCCCCGTGACACCCGCCATGCCGGACCAAGGCGCCGCCGGCAt > 1:8055074/1‑150 (MQ=38) ttgtCAGTACCGGCCTCTTCGC‑GGGTAAACCCCCTCCTCCAAAGGCC‑GGGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCCGCACGGTCGAAAAACCCCCCTGAGGTATCCCCCCGGACACCCGCCCTGCCGGACCCAGGCGCCGCCGGCAt > 1:614917/1‑150 (MQ=25) tACCGGCCTCTTCGC‑GGGTAAACCCGCGCCAACAAAGGCC‑GTGTTGGAGC‑CGGTTTAACCCCGAACGGGCCAGCACAGACGAAACACCCCCCAGAGGGATCCCCCGGGACACCCCCCAAGCCAGACCAAGGCGCCCCCGGCCGCGCcccc > 2:5144176/1‑150 (MQ=19) ggCCTCTTCGC‑GGGTAAACCCCCTCCAACAAAGGCC‑TTGTTGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCCCTGACCAAACACCCCCATGAGGTATCCCCCCTGACACCCGCCCAGCCAGACCAAGGCGCCGCCGGCATCGCCAcccccg > 1:5698344/1‑150 (MQ=37) ttCGC‑GGGTAAACCCGCTCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCCCCGCCGTCGCCg > 2:3352051/1‑150 (MQ=255) ttCGC‑GGGTAAACCCCCTCCTACAAATGCC‑TTGGAGGATC‑GGGTTTAACAGCGAAGCGGCCAGCACAGACGAAACACCCCCATGAGGTATCCCCCGGGACACCCGCCAAGACTTAACAACGCGCCCCCCGCATCGCCACCGCCGTCGCCg > 2:5714632/1‑150 (MQ=255) ttCGC‑GGGTAAAACCGCTCCTA‑AAAGGCCGTTTTTGGAGC‑CGGTTTAACCGCGGAGGGGCCAGCACAGCCGAAAAACCCCCCATAGGTATCCCCCGTGACACCCGCCAAGCCAGGACAATGCGCCGCCGGCATCGCCACCGCCGGCGccc > 1:2482918/1‑149 (MQ=255) gc‑gGGTAAACCCGCTCCTACAACGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGaaa < 2:4908930/150‑1 (MQ=255) gc‑gGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGaac > 1:6833590/1‑149 (MQ=255) gc‑gGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGaaa > 1:3173963/1‑150 (MQ=255) gTAAACCCGCTCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGt > 2:6098270/1‑150 (MQ=255) tAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTg > 2:8407419/1‑150 (MQ=255) tAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTg > 2:2632592/1‑150 (MQ=255) tAAACCCGCGCCTACACCGGCC‑TTTTCGGTGG‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTg < 1:7800969/150‑1 (MQ=255) ccccGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCaa < 2:4637976/149‑1 (MQ=255) aCCTGCTCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGa < 2:6877461/74‑1 (MQ=17) aCCCGCTCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCaa > 2:7137453/1‑150 (MQ=255) cccGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAAt > 2:4197731/1‑150 (MQ=255) ccGCTCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCATGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 2:1387878/1‑150 (MQ=255) ccGCTCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 1:1230827/1‑150 (MQ=255) ccGCTCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 1:1996186/1‑150 (MQ=255) ccGCTCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 1:4294904/1‑150 (MQ=255) ccGCTCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 2:8652198/1‑150 (MQ=38) ccGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 2:4464277/1‑150 (MQ=255) ccGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 2:2445221/1‑150 (MQ=255) ccGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 2:5647944/1‑150 (MQ=255) gCTCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 2:3492401/1‑150 (MQ=255) gCTCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATACCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 1:5504707/1‑150 (MQ=255) gCTCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGTACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 1:6413772/1‑150 (MQ=37) gCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 2:3158992/1‑150 (MQ=255) gCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 2:7551355/1‑150 (MQ=255) gCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 1:5352174/1‑150 (MQ=255) cTCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGTACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATTGCCACCGCCGTCGCCGAAAGCGTGCAATACCa > 2:2321957/1‑150 (MQ=37) ccTACACCGGCC‑TTGTTGGAGC‑GGTTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAg < 2:885267/150‑1 (MQ=255) ccTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAg > 1:1007880/1‑150 (MQ=255) ccTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAg > 1:3486361/1‑150 (MQ=255) cTACAAGGCCT‑TTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAgg > 2:4128515/1‑150 (MQ=38) taccacggCC‑TTGTTGGCGG‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGc < 2:1617654/144‑1 (MQ=255) tACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGc > 1:2978280/1‑150 (MQ=255) tACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGc > 2:3684167/1‑150 (MQ=255) acaaGGCCTTTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGcc > 2:2952114/3‑150 (MQ=255) aaaGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGc > 2:3948313/1‑150 (MQ=255) aaaGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGc > 2:6186856/1‑150 (MQ=255) aaaGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGc > 1:3731078/1‑150 (MQ=255) cggCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCaa < 2:5506925/149‑1 (MQ=255) ggcctttGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCaa > 2:1787566/6‑150 (MQ=255) gcctttGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAg > 2:4676802/5‑150 (MQ=255) gCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGa > 1:7391967/1‑150 (MQ=255) c‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACt > 2:635081/1‑150 (MQ=255) ttGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTg > 1:8194826/1‑150 (MQ=255) tAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGccc > 2:8549456/1‑150 (MQ=255) | TCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCC > NC_002947/1708099‑1708396 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |