Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,549,4920GC43.4% 151.9 / inf 244intergenic (+60/+54)mdfA/ampGmultidrug MFS transporter/muropeptide permease AmpG
Reads supporting (aligned to +/- strand):  ref base G (46/92);  new base C (63/43);  total (109/135)
Fisher's exact test for biased strand distribution p-value = 5.57e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.46e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 264 total aligned reads displayed.

GCGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTAGG  >  NC_002947/1549346‑1549638
                                                                                                                                                   |                                                                                                                                                   
gcggcgGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCtt                                                                                                                                                  <  2:1475931/150‑1 (MQ=255)
  ggcggGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTg                                                                                                                                                <  1:4007968/150‑1 (MQ=255)
   gggggggTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGt                                                                                                                                               <  1:7101680/148‑1 (MQ=255)
   gcggGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGt                                                                                                                                               <  2:3260035/150‑1 (MQ=255)
   gcggGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGt                                                                                                                                               <  2:4887578/150‑1 (MQ=255)
   gcggGGGTGGCGGGGCCTTTGGCGATGTGGCCGCTGTGTTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGt                                                                                                                                               <  1:3772708/150‑1 (MQ=255)
    gggggggggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTa                                                                                                                                              <  2:4003846/149‑1 (MQ=37)
    gggggggggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCGGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTa                                                                                                                                              <  1:166153/149‑1 (MQ=25)
    ggggggTGGGGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTa                                                                                                                                              <  1:1020512/149‑1 (MQ=255)
    ggggggTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTa                                                                                                                                              <  1:6363573/149‑1 (MQ=37)
     ggggggggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAg                                                                                                                                             <  1:3884451/150‑1 (MQ=37)
     gggggTGGGGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAg                                                                                                                                             <  2:2394702/150‑1 (MQ=255)
     gggggTGGGGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAg                                                                                                                                             <  1:652488/150‑1 (MQ=37)
     gggggTGGCGGGGGGGTTGGCGCTTTGGCGTCTGTGTTTTGTGGTGGTTGGGCGGCCTGGGTAAGTGTCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAg                                                                                                                                             <  1:4789221/150‑1 (MQ=21)
       ggggggggggggCGTTGGCGGTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGa                                                                                                                                           <  1:3536380/150‑1 (MQ=255)
       ggggggCGGGGGCTTTGGCGCTGTGGCCGATTTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGa                                                                                                                                           <  2:78451/150‑1 (MQ=255)
       ggggggCGGGGGCGGGGGCGCGGGGGCCGCGGTGGTGGGGGGGGGGGGGGCGGCCGGGGGACGGGGCGGGAGCTCGATACTCGGTCTTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGa                                                                                                                                           <  2:6947774/150‑1 (MQ=25)
       gggTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGa                                                                                                                                           <  1:3040111/150‑1 (MQ=255)
       gggTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGa                                                                                                                                           <  1:5228947/150‑1 (MQ=255)
       gggTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGGGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGa                                                                                                                                           <  1:6669798/150‑1 (MQ=255)
         ggggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGc                                                                                                                                         <  2:1691928/148‑1 (MQ=37)
         gTGGGGGGGGCGTGGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGc                                                                                                                                         <  1:5955537/150‑1 (MQ=255)
           ggggggggCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCgg                                                                                                                                       <  1:5025504/147‑1 (MQ=25)
           ggggggggCGTTGGCGCTGTGGCCGCGGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCgg                                                                                                                                       <  1:7761447/147‑1 (MQ=255)
           ggCGGGGGCGTTGGCGCTGTGGCCGCTGTGTTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCgg                                                                                                                                       <  1:2025450/150‑1 (MQ=25)
           ggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCgg                                                                                                                                       <  1:2833660/150‑1 (MQ=255)
           ggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCgg                                                                                                                                       <  1:282330/150‑1 (MQ=255)
           ggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCgg                                                                                                                                       <  2:900017/150‑1 (MQ=255)
           ggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCgg                                                                                                                                       <  2:4545128/150‑1 (MQ=37)
           ggCGGGGGCGTTGGCGCTGGGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCgg                                                                                                                                       <  2:1400529/150‑1 (MQ=255)
           ggCGGGGGCGTGGGCGCTGTGGCCGCTGCGGTTGGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGGTGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGGGCTGTGTAGGAGCgg                                                                                                                                       <  2:7355681/150‑1 (MQ=25)
           ggCGGGGGCGTGGGCGCTGGGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGTGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCgg                                                                                                                                       <  2:4194746/150‑1 (MQ=25)
            ggggggggGTTGGCGCTGTGGCCGCTGTGTTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCAGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCggg                                                                                                                                      <  1:7612474/148‑1 (MQ=255)
            gCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCggg                                                                                                                                      <  2:6204261/150‑1 (MQ=37)
              gggggCTTTGGCGCTGGGGCCGCTGGGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGtt                                                                                                                                    <  1:2348735/150‑1 (MQ=255)
                     ttGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCcgc                                                                                                                            <  2:592575/150‑1 (MQ=255)
                     tgggCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCcgc                                                                                                                            <  1:824624/148‑1 (MQ=255)
                        gcgcTGTGCCCCATGTGGTTTGTGGTGGGTGGGCGGCCTGGGTAAGGCGCTGTAGCACGATAATCGGAATTGCCGGGGCCGGCCTCTTCGCGGGAAAACCCGATCCTACAAAGGCCCGCGCCGATTTGTAGGAGCGGGATTACCCGCGaa                                                                                                                         <  2:4078690/150‑1 (MQ=255)
                           cTGTGGCCGCGGTGGTTGGGGGGGGGGGGGCGGCCGGGGGAAGGGGCTGTAGCTCGATAAGCGGTATTGCCGGGGCCGGCCTCTGCGGGGGAACACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAagag                                                                                                                      <  2:5681895/150‑1 (MQ=37)
                                    cTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGACGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGcaca                                                                                                             <  2:7107014/150‑1 (MQ=255)
                                     ggtggtgGGTGGGGGGGGGGGGGCCGGGGGACGGGGCGGTAGCGCGATAACCGTTATGGCGGGGGCCGGCCACTGCGGGGTAAAACCCGCTCCAACACCGGGCCGCGCCGCTTTGTAGGCGCGGGTTTACCCGCGAAGAGGCCAGCACAg                                                                                                            <  2:5472429/149‑1 (MQ=255)
                                      gtgGTTGGTGGTGGGGGGGCGGCCGGGGGACGGGGCTGTAGCTCGAGAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTCCCCAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAgg                                                                                                           <  2:7691520/150‑1 (MQ=37)
                                      ggggTTTGGGGTGGGGGGGCGGCGTGGGGCAGGGGCTGTCGCTCGACACGCGTTTTGGCCGGGGCCGGCCACTCCGCGGGTAAACCCGCTCCTACACTGGGCCGCGCCGCTTTGTAGGTGCGGTTTTACCCGCGAAGAGGCCAGCACAgg                                                                                                           <  2:2880415/148‑1 (MQ=25)
                                           ttGGGGGGGGGGGGCGGCGGGGGGGACGGGGCTGTCGCTCGATAATCGGTATTGCGGGGGCGGGCCTCTCCGGGGGTAAACCCGCCCCTACACCGGGCCGCGCCGCTTTGTAGGAGCGGTTTTACCCGCGAAGAGGCCAGCACAGGCAAt                                                                                                       <  2:2332179/150‑1 (MQ=25)
                                                    gtgggCGGCCTGGGCACGGGGCTGTAGCTCGATAACCGGTTTTGCGGGGCCCGGCCACTTCGCGGGTAAACCCGCTCCTACACCGGGCCGCGCCGCTTTGAAGCCGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTc                                                                                             <  1:1899906/150‑1 (MQ=37)
                                                     ggggCGGCCGGGGCCCGGGGCGGTTGCTCTATAAGGGTTTGGGCGGGGGCCGGCCTCTCGGGGGGAAACCCCGCCCCAACACCGGGCCGCGCCGCTTTGTCGTAGGGGTTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCa                                                                                            <  2:8389/149‑1 (MQ=255)
                                                        gcggcCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGGTAACCCCCGCCAACACAGGGCCGCGCCCCGGTGGTGGGGCGGGGTTAACCCCGCAGAGGGCAGCACCGGCCAAACAAAGCTTGAggg                                                                                         >  2:3754965/1‑150 (MQ=255)
                                                                                        tCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCAACAAAGGGCCGCGCCGCGTTGTAGGCGCGGGGTTACCCCCCAAGAGGCCACCACACGCAAAACAAAGCGTCAGGGCCGCTCAGCCACCCAGTGGTCGTCCGCCAcc                                                          >  2:5088382/1‑150 (MQ=25)
                                                                                        tCGGTATTGCCGGGGCCGGCCTCTTCGCGGGGAAAACCCCGACCACACCGGGGCCCGCCGCGGTGTGGGGGCGGGGTTAACCCCGCAGAGGCCCGCCCCGGCCAAACAAAGCATCAGGGCCCCGCACCCCCCCAGGGGTCGTCCGCcccc                                                          >  2:651302/1‑150 (MQ=255)
                                                                                           gTATTGCGGGGGCCGGCCTCTTCGGGGGTAAACCCGCTCCTACACCGGGCCGCGCGGCTTTGTAGGCGCGGTTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGc                                                       <  2:2813111/150‑1 (MQ=38)
                                                                                                        cggccTCTTCGCGGGTAAACCCGCTCCAACACAGGGCCGCGCCCCTTTGTTGGAGCGGGTTTACCCCCGAAGAGGCCAGCACAGGCAATACAAAACATCAGGGCCGCGCAGCCACCGAGTTGTCGTCCGCCACCGGCGTCcccccccccg                                          >  1:1217664/1‑148 (MQ=25)
                                                                                                              ctTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCt                                    <  2:7377771/150‑1 (MQ=255)
                                                                                                               ttCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGCGCGGGTTTACCCGCGAAGAGGCCAGCACACGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTACACCACCCGCGTCCCCCGCCCGGCTTCCTg                                   >  2:7318881/1‑150 (MQ=21)
                                                                                                                tCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGa                                  <  2:2135719/150‑1 (MQ=255)
                                                                                                                 cgcgGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGAt                                 <  2:3822800/150‑1 (MQ=255)
                                                                                                                      gTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCAc                            >  2:43699/1‑150 (MQ=25)
                                                                                                                       tAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGATCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTACCTTATGCCACt                           >  1:4584801/1‑150 (MQ=255)
                                                                                                                          aCCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCcccgcc                                             >  1:747410/1‑129 (MQ=255)
                                                                                                                          aCCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCa                        >  2:1767922/1‑150 (MQ=255)
                                                                                                                           cccGCTCCTACCCCGGGCGGCGCCGCTTTGTTGGCGCGGGTTTCCCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAg                       <  1:5697102/150‑1 (MQ=255)
                                                                                                                           cccGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAg                       >  2:4991036/1‑150 (MQ=255)
                                                                                                                           cccGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAg                       >  2:7487996/1‑150 (MQ=255)
                                                                                                                           cccGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAg                       >  2:1903491/1‑150 (MQ=255)
                                                                                                                            ccGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAgg                      >  2:3368473/1‑150 (MQ=255)
                                                                                                                            ccGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGAt                                 <  1:5471665/139‑1 (MQ=25)
                                                                                                                            ccGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGAt                                 >  2:5471665/1‑139 (MQ=25)
                                                                                                                            ccGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAgg                      >  1:4833225/1‑150 (MQ=37)
                                                                                                                            ccGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAgg                      >  2:611977/1‑150 (MQ=37)
                                                                                                                            ccGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAgg                      >  1:6952068/1‑150 (MQ=37)
                                                                                                                              gCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCCGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGc                    >  1:6464662/1‑150 (MQ=21)
                                                                                                                                tCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCga                  >  2:3602158/1‑150 (MQ=255)
                                                                                                                                tCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCga                  >  2:4288858/1‑150 (MQ=255)
                                                                                                                                tCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCga                  >  2:3571267/1‑150 (MQ=25)
                                                                                                                                tCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTcc                                     <  1:4201904/131‑1 (MQ=25)
                                                                                                                                tCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTcc                                     >  2:153335/1‑131 (MQ=25)
                                                                                                                                tCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAggg                     <  2:557868/147‑1 (MQ=37)
                                                                                                                                tCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCga                  >  2:1931733/1‑150 (MQ=37)
                                                                                                                                tCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCga                  >  2:5809633/1‑150 (MQ=37)
                                                                                                                                tCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCga                  >  2:2484104/1‑150 (MQ=37)
                                                                                                                                  cTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatc                >  1:7551440/1‑150 (MQ=255)
                                                                                                                                  cTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCCGGCAATACAAAGCTTCAGGGCCGCTCAGACACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatc                >  1:3577470/1‑150 (MQ=21)
                                                                                                                                  cTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatc                >  2:2934968/1‑150 (MQ=37)
                                                                                                                                  cTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatc                >  2:3177290/1‑150 (MQ=37)
                                                                                                                                  cTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatc                >  2:1419690/1‑150 (MQ=37)
                                                                                                                                  cTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatc                >  1:4408623/1‑150 (MQ=37)
                                                                                                                                   tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca               >  2:7506528/1‑150 (MQ=37)
                                                                                                                                   tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca               >  2:1889095/1‑150 (MQ=37)
                                                                                                                                   tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca               >  1:2232766/1‑150 (MQ=37)
                                                                                                                                   tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca               >  2:5740756/1‑150 (MQ=37)
                                                                                                                                   tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca               >  2:1194731/1‑150 (MQ=37)
                                                                                                                                    acacAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCAcc                                                          <  1:6194252/106‑1 (MQ=255)
                                                                                                                                     cacaGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcagg             >  2:368542/1‑150 (MQ=255)
                                                                                                                                      acaGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcagga            >  2:6189659/1‑150 (MQ=255)
                                                                                                                                        agcggcgcggcccTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcaggatc          >  2:2470238/6‑150 (MQ=255)
                                                                                                                                         ggccggcgccgcTTTGTCGGCGGGTTTTACCCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcaggatca         <  1:154400/145‑1 (MQ=255)
                                                                                                                                           gccgcgccgcGTGGGCGGAGGGGGTTCACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGc       <  1:6055835/150‑1 (MQ=255)
                                                                                                                                             cgcgccgcTTTGTAGGAGCGGTTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGt     <  2:693758/150‑1 (MQ=255)
                                                                                                                                              gcgccgcTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTa    >  1:5348245/1‑150 (MQ=255)
                                                                                                                                              gcgccgcTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTa    >  1:6777118/1‑150 (MQ=255)
                                                                                                                                               cgccgcTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTAg   >  2:1116676/1‑150 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
GCGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTAGG  >  NC_002947/1549346‑1549638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: