Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_002947 | 2,043,352 | (G)10→11 | coding (1120/1143 nt) | rffE ← | UDP‑N‑acetylglucosamine‑2‑epimerase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,043,342 | 1 | . | G | 86.8% | 469.2 / 68.4 | 152 | coding (1130/1143 nt) | rffE | UDP‑N‑acetylglucosamine‑2‑epimerase |
Reads supporting (aligned to +/- strand): ref base . (19/1); new base G (132/0); total (151/1) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.32e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 162 total aligned reads displayed.
GCATTCCAAGGCAAATCTCTTCGTCGTGATTGTTGACTGTTGTTGGGGGGGCACGCGGAAGGGGGGCTGCTGGCCAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGT‑‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACAATCGATGCTACTTC > NC_002947/2043197‑2043487 | gCATTCCAAGGCAAATCTCTTCGTCGTGATTGTTGACTGTTGTTGGGGGGGCACGCGGAAGGGGGGCTGCTGGCCAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGT‑‑‑ggg > 1:868457/1‑149 (MQ=255) gCATTCCAAGGCAAATCTCTTCGTCGTGATTGTTGACTGTTGTTGGGGGGGCACGCGGAAGGGGGGCTGCTGGCCAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGT‑‑‑ggg > 1:2758466/1‑149 (MQ=255) ttCCAAGGCAAATCTCTTCGTCGTGATTGTTGACTGTTGTTGGGGGGGCACGCGGAAGGGGGGCTGCCGGCCAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGT‑‑‑ggg‑ggg > 1:5925089/1‑149 (MQ=255) cAAGGCAAATCTCTTCGTCGTGATTGTTGACTGTTGTTGGGGGGGCACGCGGAAGGGGGGCTGCTGGCCAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGT‑‑‑ggg‑gggggg > 1:2590243/1‑149 (MQ=255) aGGCAAATCTCTTCGTCGTGATTGTTGACTGTTGTTGGGGGGGCACGCGGAAGGGGGGCTGCTGGCCAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGT‑‑‑ggg‑gggggggg > 1:3119390/1‑148 (MQ=255) gCAAATCTCTTCGTCGTGATTGTTGACTGTTGTTGGGGGGGCACGCGGAAGGGGGGCTGCTGGCCAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGT‑‑‑ggg‑ggggggggcc > 1:8174785/1‑146 (MQ=255) aTCTCTTCGTCGTGATTGTTGACTGTTGTTGGGGGGGCACGCGGAAGGGGGGCTGCTGGCCAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGt > 1:5743277/1‑149 (MQ=255) tctcTTCGTCGTGATTGTTGACTGTTGTTGGGGGGGCACGCGGAAGGGGGGCTGCTGGCCAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTg > 1:6217396/1‑149 (MQ=255) ttCGTCGTGATTGTTGACTGTTGTTGGGGGGGCACGCGGAAGGGGGGCTGCTGGCCAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCa > 1:4297559/1‑149 (MQ=255) cgtGATTGTTGACTGTTGTTGGGGGGGCACGCGGAAGGGGGGCTGCTGGCCAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCt > 1:8649297/1‑149 (MQ=255) tGATTGTTGACTGTTGTTGGGGGGGCACGCGGAAGGGGGGCTGCTGGCCAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCttt > 1:7109891/1‑149 (MQ=255) aTTGTTGACTGTTGTTGGGGGGGCACGCGGAAGGGGGGCTGCTGGCCAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGc > 1:7890511/1‑149 (MQ=255) aTTGTTGACTGTTGTTGGGGGGGCACGCGGAAGGGGGGCTGCTGGCCAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGT‑‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCg > 1:1573800/1‑149 (MQ=255) tgttgACTGTTGTTGGGGGGGCACGCGGAAGGGGGGCTGCTGGCCAGTTTTTACTGGGGGGCGGCGGGGCTGCGGAAATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGt > 1:5232591/1‑149 (MQ=255) cTGTTGTTGGGGGGGCACGCGGAAGGGGGGCTGCTGGCCAGTCTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATgcgc > 1:8496893/1‑149 (MQ=255) ttgGGGGGGCACGCGGAAGGGGGGCTGCTGGCCAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAg > 1:4434038/1‑149 (MQ=255) tgGGGGGGCACGCGGAAGGGGGGCTGCTGGCCAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAgg > 1:3927380/1‑149 (MQ=255) gggggCACGCGGAAGGGGGGCTGCTGGCCAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCtt > 1:3805602/1‑149 (MQ=255) gCACGCGGAAGGGGGGCTGCTGGCCAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGcc > 1:2632375/1‑149 (MQ=255) cACGCGGAAGGGGGGCTGCTGGCCAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCa > 1:8350158/1‑149 (MQ=255) cACGCGGAAGGGGGGCTGCTGGCCAGTTTTTAATGGTGGGCGGCGGGGCTGCGGAAATCGTATTCGCGGGTGAACCCGCACCAACATTGA‑GC‑GGT‑‑‑GGGCGGGGGGGCCATGGGGCAAGCGCTTTGCCTATGAGCGCGCAGGCATTGCCa > 1:5377736/1‑149 (MQ=255) cgGAAGGGGGGCTGCTGGCCAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGc > 1:8120197/1‑149 (MQ=255) cgGAAGGGGGGCTGCTGGCCAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGc > 1:5790095/1‑149 (MQ=255) cgGAAGGGGGGCTGCTGGCCAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGc > 1:5790063/1‑149 (MQ=255) cgGAAGGGGGGCTGCTGGCCAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGT‑‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGcc > 1:2907899/1‑149 (MQ=255) gAAGGGGGGCTGCTGGCCAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTAAGCGCCCGCAGGCATTGCCAACGCCa > 1:1492507/1‑149 (MQ=255) ggggggCTGCTGGCCAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAg > 1:3329425/1‑149 (MQ=255) gggggCTGCTGGCCAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGAAGGCTTTGCCATCGCCATAgg > 1:7393139/1‑149 (MQ=255) gctgctGGCCAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCCGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGtt > 1:790532/1‑149 (MQ=255) gctgGCCAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATg > 1:7016832/1‑149 (MQ=255) ctgGCCAGTTTTTACTGGGTGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCAGAGGGGTTATgg > 2:6120482/1‑149 (MQ=255) tgGCCAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGT‑‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGc > 1:6131781/1‑149 (MQ=255) ggCCAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GCGGGG‑‑‑GGG‑GGGGGGGCCAGGGGGCCCGGGCTTTGGGTATGCGCGCCCCGGCTTTGCCAACGCCAGGGGGGTGATGGGc > 2:5607156/1‑149 (MQ=255) ccAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGa > 1:2888429/1‑149 (MQ=255) ccAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGa > 1:7539375/1‑149 (MQ=255) ccAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGa > 1:2888021/1‑149 (MQ=255) cAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCCGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCAAAGGGGTTATGGGCGaa > 1:3924987/1‑149 (MQ=255) aGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCGTTGCCATCGCCATAGGGGTTATGGGCGAAg > 1:7947145/1‑149 (MQ=255) aGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTCCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAg > 1:3548524/1‑149 (MQ=255) aGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGT‑‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGc > 2:4447575/1‑149 (MQ=255) aGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATGGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAg > 2:4354025/1‑149 (MQ=255) tttttACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GCGGGG‑‑‑GGG‑GGGGGGGCCCGGTGGCCCGGGCTTTGCGTATGCGCGCGCAGGCGTTGCCATCGCCATAGGGGTTCAGGGCGCAGcg > 2:5720351/1‑148 (MQ=255) ttttACTGGGGGGCGGCGGGGCTGCGGATATCGTCTTCGCGGGGGAACCCGCACCGACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCCGGGGGCCAGGGCGTTGCGTGGGCCCGCGGAGGCTTTGCCGTCGCCCTGGGGGGGCTGGGCGAAGCTc > 2:2697420/1‑149 (MQ=255) ttACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGCACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCGGGGGGCCCGGGCTTTCCGTAGGCCCGCGCAGCCATTGCCAACGCCAGGGGGGTTAGGGGCGagggtatt > 2:1669459/1‑142 (MQ=255) tACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCAtt > 1:2348431/1‑149 (MQ=255) tACTGGGGGGCCGCGGGGCTGCGGAAAAAGTAATCCCCGGTGAACCCCCACCAACAATGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTTCGTATTCGCGCGCACGCATTTCCAACGCCAAAGGGGTTAATGGCGAAGCTCaat > 1:3250462/1‑147 (MQ=255) cTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTc > 1:252278/1‑149 (MQ=255) tGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTcg > 1:4868878/1‑149 (MQ=255) ggggggCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACCTTGAGGG‑GGG‑‑‑GGG‑GGGGGGGCCAGGTGGCCCGGGCGTTGCGGGGGCGCGCGCGGGCTTTGCCATCGGCCGGGGGGTGATGGGCGTCGCTCCTGTcgc > 2:5360101/1‑149 (MQ=255) ggggggCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTcgc > 1:7007146/1‑149 (MQ=255) ggggggCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGT‑‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTcgcg > 1:4051520/1‑149 (MQ=255) ggggCGGCGGGGGTGCGGTTATCGTATTCGCGGGTGAACCCGCACCTTCATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCGGGTGGCCAGGGCGTTGGGTGTGCGGGGGCAGGCGTTGCCAGCGCGCTAGGGGTTTTGGGCGGAGCTCATTTcgcgg > 2:2216481/1‑148 (MQ=255) gggCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGAt > 1:2628408/1‑149 (MQ=255) gcggGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATAcgcc > 1:450673/1‑149 (MQ=255) cggGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATAcgccg > 1:2440659/1‑149 (MQ=255) gggCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGGTTTGCGTATGCGCGCGCCGGCTTTGCCATCGCCATGGGGGTTATGGGCGACGCTCATGTCGCGATAGgccgcc > 2:3022154/1‑149 (MQ=255) gCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTGG‑GGG‑GGGGGGGCCAGGTGGCAAGGGCTTAGCGTATGCGCGCGAAGGCTTTGACATCGCCATAGGGGTTATGGGCTAAGCTCATTTAGCGATAACCCGCCTCAt > 2:5719323/1‑149 (MQ=255) cGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTTTGGGCGAAGCGCATTTAGCGATACGCCGCCGCATCg > 2:2866458/1‑149 (MQ=255) cGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCg > 1:5913240/1‑149 (MQ=255) cGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCg > 1:6534764/1‑149 (MQ=255) gATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGAATGCGCGCGCAGGATTTGCCATCGCCCTAGGGGTTATGGGCGAAGCTCATTTAGCGATACGCCGCCTCATCGGt > 2:3593441/1‑149 (MQ=255) atCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAg > 1:1339823/1‑149 (MQ=255) tCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCACGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCAATCGCCAAAGGGGTTATTGGCCAACCTCATGTCCCGATACGCCGCCTCATCGGTCAGc > 1:2706996/1‑149 (MQ=255) cGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCa > 1:2050717/1‑149 (MQ=255) cGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGT‑‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCaa > 1:1110439/1‑149 (MQ=255) gTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGAAGGCTTTGCCATCGCCAGAGGGGGTATGGGCGACGCTCATTTCGCGTTACGCCGCATCAGCGGGCAGCaa > 2:3642847/1‑149 (MQ=255) taggtgcgGGTTCACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCGTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATCGGGGTTAGGGGCGAAGCTCATTTCGCGATACGCCGCCTCAGCGGTCAGCGAg > 2:8070375/6‑149 (MQ=255) tATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAg > 1:8620236/1‑149 (MQ=255) tATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCAAAGGGGTTATGGGCCAAGCTCATGTCGCGATACGCCGCCTCATCGGTCAGCacg > 2:4554369/1‑147 (MQ=255) ttCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCGTAGCGTATGCGCCCGCAGGAGTTGCCAACGCCAAACGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGt > 2:345470/1‑149 (MQ=255) tgcgGGTTCACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTAc > 1:1082359/2‑149 (MQ=255) gcgGGTTCACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACt > 1:6796146/1‑149 (MQ=255) gcgGGTTCACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCGTTGCGGATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCGCAGCGGTCAGCAAGGTAcg > 2:4314446/1‑148 (MQ=255) cgGGTGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTAGCGAAACGCCGCCTCATAGGTCAGACATGTACTc > 2:7865943/1‑149 (MQ=255) tggaCCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACg > 2:7320511/4‑149 (MQ=255) tGAACCCGCACCTACATTGA‑GC‑GGTGGGGGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTaaa > 1:6458706/1‑149 (MQ=255) tGAACCCGCACCTACATTGA‑GC‑GGTGG‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAAc > 1:7782068/1‑149 (MQ=255) tGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACg > 1:6917516/1‑149 (MQ=255) tGAACCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACg > 2:6197634/1‑149 (MQ=255) aaCCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTCCTCAACGcc > 2:5154426/1‑149 (MQ=255) aaCCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGcc > 2:4242346/1‑149 (MQ=255) aCCCGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGccc > 1:6634137/1‑149 (MQ=255) cccGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCg > 2:6598666/1‑149 (MQ=255) cccGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCg > 2:4077290/1‑149 (MQ=255) cccGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATAGCCATAGGGGTTATTGGCGAAGCACATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCg > 1:1327131/1‑149 (MQ=255) ccGCACCTACATTGA‑GC‑GGTGG‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATAGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATAGGTCAGCAAGGTAATCAACGCCCg > 2:3097840/1‑149 (MQ=255) cGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGca > 1:5651314/1‑149 (MQ=255) cGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGca > 1:5650870/1‑149 (MQ=255) cGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGGTATGGGCGAAGCTCATTGCGCGATACGCCGCCGCAGCGGTCAGCAAGGTACTCAccgcccgcc > 2:6024069/1‑148 (MQ=255) cGCACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCACGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGca > 2:1545932/1‑149 (MQ=255) cACCTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTAAGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCCCCTAAAAGGTCAGCAAGGAACAAAACGCCCCcaca > 2:2879968/1‑149 (MQ=255) cACCTACATTGA‑GC‑GGT‑‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACaa > 1:480262/1‑149 (MQ=255) ccTACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACAAt > 1:1674220/1‑149 (MQ=255) tACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACAATCg > 1:277881/1‑149 (MQ=255) tACATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCACATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACAATCg > 1:5883538/1‑149 (MQ=255) aCATTGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACAATCGa > 2:6369835/1‑149 (MQ=255) tGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCCGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTGTGCCATCGCCATGGGGGTTATGGGCGGAGCTCATTTCGCGATACGCCGCCGCATCGGTCAGCAAGGTACTCAGCGCCCGAACAAACGATGCt > 2:2501382/1‑149 (MQ=255) tGA‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGAATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCGCAGCGGTCAGCCCGGTACTCAACGCCCGCACAATCGATGCt > 2:122575/1‑149 (MQ=255) a‑GC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCACAACGGTCAGCAAGGTCCTCAACGCCCGCACAATCGATGCTAc > 2:6922953/1‑149 (MQ=255) gC‑GGTG‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACAATCGATGCTACt > 1:2293228/1‑149 (MQ=255) | GCATTCCAAGGCAAATCTCTTCGTCGTGATTGTTGACTGTTGTTGGGGGGGCACGCGGAAGGGGGGCTGCTGGCCAGTTTTTACTGGGGGGCGGCGGGGCTGCGGATATCGTATTCGCGGGTGAACCCGCACCTACATTGA‑GC‑GGT‑‑‑GGG‑GGGGGGGCCAGGTGGCCAGGGCTTTGCGTATGCGCGCGCAGGCTTTGCCATCGCCATAGGGGTTATGGGCGAAGCTCATTTCGCGATACGCCGCCTCATCGGTCAGCAAGGTACTCAACGCCCGCACAATCGATGCTACTTC > NC_002947/2043197‑2043487 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |