Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,471,833 | 0 | T | G | 29.4% | 545.3 / 80.9 | 349 | intergenic (‑16/+108) | PP_3081/PP_5560 | hypothetical protein/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base T (62/168); new base G (83/13); total (168/181) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.06e-24 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
Only 100 of 357 total aligned reads displayed.
GCGTACCTGCGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTCCGCTGGCTC > NC_002947/3471685‑3471981 | gcgTACCTGCGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCt < 1:4045895/149‑1 (MQ=255) cgTACCTGCGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTg < 1:578625/149‑1 (MQ=255) caaCCTGCCCGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGgc > 1:4318634/3‑149 (MQ=255) aCCTGCGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTgcgg < 1:7099264/149‑1 (MQ=255) ccTGCGGGCAGGTTGTCCCAGCTCCGTTGCGGGGTCCGCTCGTCACCGGCACCGCATGCCGGGTCCCGGCCGACCTGTTGCAGGGCAAGGACGCCGCCATCAGTGAAAGACGCGGAACGGACCGACATCGCGCCTGGGCCGCCTgcggc < 2:5059830/149‑1 (MQ=255) ccTGCGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGGCCCCggcggc > 1:937099/1‑149 (MQ=255) ccTGCGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTgcggc < 2:2555833/149‑1 (MQ=255) ccTGCGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTgcggc < 1:8382108/149‑1 (MQ=255) tGCGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGcggcgg < 2:1466120/149‑1 (MQ=255) cGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCCGCGGCGGcc > 1:213080/1‑149 (MQ=255) gggCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCa < 1:8158856/149‑1 (MQ=255) gggCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGCAGGCGGCCa < 2:7489283/149‑1 (MQ=255) gggCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCAGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGCAGGCGGCCa < 1:4550014/149‑1 (MQ=255) cAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACg > 2:8288077/1‑149 (MQ=255) cAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCCGCGGCCCAcc > 1:2248834/1‑148 (MQ=255) cAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGAATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGACCTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACg > 2:1492794/1‑149 (MQ=255) aGGTTGTCCCAGCTCAGTTGCGGGCTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGc < 2:7922032/149‑1 (MQ=255) ggTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCCCCGGCGGCGGcccccccc > 1:3775762/1‑143 (MQ=255) ttGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGGCGCCTGCGGCGGCCAACGCggt > 2:6571110/1‑149 (MQ=255) cAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGTAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAggg < 2:5992362/149‑1 (MQ=255) cAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGCCGGCGGCCAACCCTGTGCAggg > 2:4134990/1‑149 (MQ=255) aGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACCCGGTGCAGGgc > 2:1146367/1‑149 (MQ=255) cTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACACCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCCACGCTGTGCAGGgcag > 2:5757654/1‑149 (MQ=255) aGTTGCGGGGTCCGCTCTTCACCGGCCCCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCaa < 2:2887666/149‑1 (MQ=255) gTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCAACGCGGTGCCGGGCAGCcaa > 1:8560710/1‑149 (MQ=255) gTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCAATCAGTTAAAGACGTGTAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCaaa < 2:1067255/149‑1 (MQ=255) ggggTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCAACGCTGTGCAGGGCAGCAAagccgc > 2:8318753/1‑149 (MQ=255) gggTCCGCTCTTCACCGGCACCGATTGCGGGGTCCTGGCCGACCTGTTGCTGGGCACTGACGCCGCCATCTTTTAAAGACGCGTAACTGACCGACATCGCGCCTGGGCCGCCTGGGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCg < 1:2516691/149‑1 (MQ=255) ggTCCGCCCTTCCCCGGCACCGCATGCCGGGACCGGGCCGACCGGTGGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGCCAACGCGCCTGGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGa < 2:4782019/149‑1 (MQ=255) gTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGGCATCGCGCCTTGGCCGCCGGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGaa > 2:4360695/1‑149 (MQ=255) gTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCCGGGCAGCAAAGCAGCGaa > 2:7221897/1‑149 (MQ=255) tCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCTGGGCAATGACGCCGCCATCTGTGAAAGACGAGGAACTGACCCACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAAc < 1:620240/149‑1 (MQ=255) ccGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCAGCGGCGGGCAACGCGGTGCAGGGCAGCAAACCAGCGAACa > 1:4933660/1‑149 (MQ=255) cGCTCTTCACCGGCACCGCTTGCGGGGTCCTGGCCGACCTGTTGCTGGGCAATGACGCCGCCATCTGTGAAAGACGAGTAACTGACCGACATCGCGCCTTGGCCGCCTGCGGGGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAg < 2:1544804/149‑1 (MQ=255) gCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCAACGCGGTGCAGGGCAGCAAAGCAGCGCACAGc > 2:3533060/1‑149 (MQ=255) ctctTCCCGGGCACCGCATGCGGGGTCCTGGCCGCCCTGTTGCAGGGCAATGACGCCGCCATCTGTTAAAGACGAGGAACTGACCGACACCGCGCCTGGGCCGCCTGGGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGcc < 1:1610984/149‑1 (MQ=255) ctTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCTGGGCAATGACGCCGCCATCAGTTAAAGAGGTGGAACTGACCTACATCGCGCCTTGGCCGCCTGGGGGGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAg < 1:5647030/149‑1 (MQ=255) ctTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAg < 2:7765302/149‑1 (MQ=255) ggCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCAGCGGCGGCCAACCCGGTGGAGGGCAGCAAAGCAGCCAACAGCCACGGTCTGa > 1:5446295/1‑149 (MQ=255) gCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCCACCCGGGGCAGGGCAGCAAAGCAGCGAACAGCCCGTGTCTGAg > 2:3733958/1‑149 (MQ=255) cATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGGCGCCGGCGGCGGCCAACCCGGTGGCGGGGAGCAAAGCCGCGAACAGCCCGTGTCTGGGGTGcct > 1:7796348/1‑147 (MQ=255) tggcggggTCCGGGCCGACGTGTTGCTGGGCATTGCCGCCGCCATCTGTTAAAGACGCGGAACGGCCCGACATCGCGCCTTGGCCGCCTGGGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATg < 1:6049777/144‑1 (MQ=255) tGCCGGGTCCTGGCCGACCTGTTGCTGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATgg < 2:7611816/149‑1 (MQ=255) tGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGCGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATgg < 2:1926521/149‑1 (MQ=255) gCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGt < 1:1423053/149‑1 (MQ=255) gggTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCAGCGGCGGCCCACGCGGTGCCGGGCCGCACAGCAGCGAACAGCCCGGGTCGGGGGGGCCTgggcca > 2:4009835/1‑145 (MQ=255) gTCCTGGCCGACGTGTTGCTGGGCAATGACGCCGCCATCAGTTAAAGACGAGCAACGGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATc < 1:3210711/149‑1 (MQ=255) gTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGGCGCCGGCGGGGGGCCACCCGGTGCAGGGGCGCAAAGCAGCGAACAGCCACGGTGTGAGTGGGAGGGTCaaac > 1:3831017/1‑147 (MQ=255) gTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCAACGCAGTGCCGGGCAGCACAGCAGCGAACACCCCGGGTGGGTGGTGCATGGTCAATc > 2:7670078/1‑149 (MQ=255) ccTGGCCGCCCTGGTGCCGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTGGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCt < 2:3315987/149‑1 (MQ=255) ccTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGCGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCt < 2:2358204/149‑1 (MQ=255) ccTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGTAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCt < 2:6527945/149‑1 (MQ=255) ccTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCt < 2:1397469/149‑1 (MQ=255) cTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGCGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCtt < 2:3352232/149‑1 (MQ=255) tGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCCACGCGGTGCAGGGCAGCAAAGCAGCGCACAGCCCGTGTCTGAGGGGCATGGTCAATCCATg > 2:4287928/1‑149 (MQ=255) tGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTg < 2:2139445/149‑1 (MQ=255) tGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTg < 1:7256520/149‑1 (MQ=255) ggCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCCGTGTCTGAGGTGCATGGTCAATCCTTgg > 2:4956098/1‑149 (MQ=255) gACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGTCGGGGGCCAAACCGGTGCAGGGCAGCAAAGCATCCAAAAGCCACTGTGTGAGGTGCATGGTCAAACCGTGGCAgg > 2:3768611/1‑149 (MQ=255) gACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCCACCCGGTGCAGGGCCGCAAAGCAGCGAACAGCCCGGGTGGGTGGTGCCTTGTCAATACATGGCAgg > 2:3111777/1‑149 (MQ=255) cacgtGTTGCCGGGCAATGCCGCCGCCATCAGTTAAAGACGAGCACCTGACCGACTTCGCCCCTGGGCCGCCGGGGGGGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAgg < 1:12286/145‑1 (MQ=255) aCCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGTGGAACTGTCCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAggg < 2:1212780/149‑1 (MQ=255) aCCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAggg < 2:7289216/149‑1 (MQ=255) ccTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCCACCCTGTGCAGGGCCGCAAACCAGCCCACAGCCCCTGTCTGGGGGGGATGGTCAATCCTTGGGAGGGc > 2:1695519/1‑149 (MQ=255) cTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCCACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCCGTGTCGGAGGTTCATGGTCAAACCTTGGCCGGGCg > 2:660404/1‑149 (MQ=255) cTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCCACCCGGTGCAGGGCAGCACAGCAGCGCCAAGCCAGGGTCTGGGGTGCCTGGTCCATCCGTGGCAGGGCg > 2:172745/1‑149 (MQ=255) tGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCGGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCGTGGCAGGGCGt > 2:6335690/1‑149 (MQ=255) gTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTc < 2:6905678/149‑1 (MQ=255) ttGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCCGCGGCGGCCAACCCTGTGCACGGCAGCAAAGCAGCGAACAGCCCCTGTGTGAGGTGCATGGTCAAAACTTTGCAGGGCGGCa > 1:3502157/1‑149 (MQ=255) ttGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCCCCGGCCGCGGCCCACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCCGTGGCTGAGGTGCATGGTGAATCCATGGGAGGGCGTcc > 2:5260305/1‑148 (MQ=255) gCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCAACGCTGTGCAGGGCAGCAAAACAGCGAACAGCCAGTGTCTTATGTGGATGGTCAATACATGGCAGGGCGTCACGGcgcc > 1:6423340/1‑146 (MQ=255) gccgccATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGcc < 2:2776325/149‑1 (MQ=255) ccgccATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCCCCAGCGGCGGCCAACGCTGTGGAGGGCAGCAAAGCAGCGAACAGCCCCTGTCTGAGGTGCATGGTCAAAACTTTGCAGGGCGTCACCGCTCAGACTATccc > 1:8714134/1‑149 (MQ=255) cgccATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCCGCCCACCCGGTGCACGGCAGCAAACCCGCCCACACCCCGGGTCAGAGGGGCCGGGTCCCTCCATGGCCGGGCCGCACCGCGCAGTCGAGcccc > 2:4580043/1‑148 (MQ=255) cATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTGGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGt < 2:6128951/149‑1 (MQ=255) tCAGTGAAAGTCGAGGAACTGACCGACATCGCGCCTTGGCCGCCGGCGGCGGCCAACGCGGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAAACCTTGGCAGGGCGTCACGGCTCAGTCAAGCCCAGGTCt > 2:5881189/1‑149 (MQ=255) gTGAAAGACGAGGAACTGACCGACCTCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCt < 2:3233766/149‑1 (MQ=255) tGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCtt < 2:1819064/149‑1 (MQ=255) gACGAGGACCTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCg < 1:4201847/149‑1 (MQ=255) ggAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGt < 1:4971062/149‑1 (MQ=255) gAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTc < 2:2079566/149‑1 (MQ=255) aaCTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTcc < 2:249803/149‑1 (MQ=255) aCTGACCGACAGCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCt < 2:6297272/149‑1 (MQ=255) ccGACATCGCGCCTTGGGCGCCTGCGGCGGGCAAAGCTGTGGAGGGCCGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATACATGGCAGGGCGTCACGGCTCAGGCTAGCCCACGTCTGCTTCACCCGCTGTACTGGTcc > 2:5321824/1‑149 (MQ=255) gACATCGCGCCTTGGGCGCCGGCGGCGGCCAACCCGGTGGAGGGCAGCAAAGCAGCGAACAGCCAGTGTGTGTGGTGCATGGTCAATACATGGGAGGGCGTCACGGCGCAGTCTATCCCAGGTCTGCGTCAGCGGCGGTCCTGGGCCta > 2:4452308/1‑148 (MQ=255) tCGCGCCTTGGCCGCCTGCGGCGACCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCa > 2:5789604/1‑149 (MQ=255) cgcgCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAg < 2:865636/149‑1 (MQ=255) cgcgCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAg < 1:3413006/149‑1 (MQ=255) cgcgCCTTGCCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAg < 1:1782608/149‑1 (MQ=255) cgcCTGGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTg < 1:6770908/149‑1 (MQ=255) ttGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTc > 1:8027609/1‑149 (MQ=255) tGGCCGCCGCAGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTcc > 1:8079885/1‑149 (MQ=255) tGGCCGCCGCAGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTcc > 1:2935519/1‑149 (MQ=255) gccgccTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTCCGc > 2:2408409/1‑149 (MQ=255) ccgccTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTCCGCt > 1:7700226/1‑149 (MQ=255) ccgccTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTCCGCt > 1:4520564/1‑149 (MQ=255) cgccTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTCCGCTg < 2:8010729/149‑1 (MQ=255) cgccTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTCCGCTg < 1:6069578/149‑1 (MQ=255) gccTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCGGCGGCTGTCCTGGTCCTCGGCAGTGCCTCCGCTgg > 2:3189182/1‑149 (MQ=255) tGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTCCGCTGGCTc < 1:8783639/149‑1 (MQ=255) | GCGTACCTGCGGGCAGGTTGTCCCAGCTCAGTTGCGGGGTCCGCTCTTCACCGGCACCGCATGCCGGGTCCTGGCCGACCTGTTGCAGGGCAATGACGCCGCCATCAGTGAAAGACGAGGAACTGACCGACATCGCGCCTTGGCCGCCTGCGGCGGCCAACGCTGTGCAGGGCAGCAAAGCAGCGAACAGCCAGTGTCTGAGGTGCATGGTCAATCCTTGGCAGGGCGTCACGGCTCAGTCTAGCCCAGGTCTGCTTCAGCGGCTGTCCTGGTCCTCGGCAGTGCCTCCGCTGGCTC > NC_002947/3471685‑3471981 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |