Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,877,8050TG25.1% 492.2 / 28.2 237Q443P (CAG→CCG) PP_3421sensor histidine kinase
Reads supporting (aligned to +/- strand):  ref base T (42/113);  new base G (52/0);  total (124/113)
Fisher's exact test for biased strand distribution p-value = 3.20e-23
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 239 total aligned reads displayed.

AATCCTGATGTCATTTAACGAATTCACGCCAGTCGGAAACTTAACGAAACCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGACAGGCGCAAAGTCAGGCTGCGCCGGTTGTGACGTACCACCTCGATACGCAACCGCCCGCCCTGCTCCATCGACTCCA  >  NC_002947/3877658‑3877952
                                                                                                                                                    |                                                                                                                                                     
aaTCCTGATGTCATTTAACGAATTCACGCCAGTCGGAAACTTAACGAAACCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑Tg                                                                                                                                                      >  2:6769636/1‑149 (MQ=255)
 aTCCTGATGTCATTTAACGAATTCACGCCAGTCGGAAACTTAACGAAACCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑Tgg                                                                                                                                                     >  2:1435088/1‑148 (MQ=255)
  tCCTGATGTCATTTTACGAATTCACGCCAGTCGGAAACTTAACGAAACCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGtt                                                                                                                                                    <  2:3161115/149‑1 (MQ=255)
    cTGATGTCATTTAACGAATTCACGCCAGTCGGAAACTTAACGAAACCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTtg                                                                                                                                                  <  1:1388898/149‑1 (MQ=255)
     tGATGTCATTTAACGAATTCACGCCAGTCGGAAACTTAACGAAACCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCCCCCCCACCCCCCCC‑CGTTtgg                                                                                                                                                 >  1:8195409/1‑149 (MQ=255)
     tGATGTCATTTAACGAATTCACGCCAGTCGGAAACTTAACGAAACCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTtgg                                                                                                                                                 <  1:6448541/149‑1 (MQ=255)
       ctGTCATTTAACGAATACCCGCCCGTCGGAAACTTAACGAAACCCTAGTGCCATGGCCGTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTtggtg                                                                                                                                               <  2:6578770/148‑1 (MQ=38)
          tCATTTAACGAATTCACGCCAGTCGGAAACTTAACGAAACCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTa                                                                                                                                            <  1:8760937/149‑1 (MQ=255)
           cATTTAACGAATTCACGCCAGTCGGAAACTTAACGAAACCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTaa                                                                                                                                           <  1:1076771/149‑1 (MQ=255)
            aTTTAACGAATTCACGCCAGTCGGAAACTTAACGAAACCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCCCCCCCCCCCCACCC‑CGGTTGGTGGTaaa                                                                                                                                          >  1:3966936/1‑149 (MQ=255)
            aTTTAACGAATTCACGCCAGTCGGAAACTTAACGAAACCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCCGCCCACCC‑AGGTTGGGGGTaaa                                                                                                                                          >  2:4529064/1‑149 (MQ=255)
             tttAACGAATTCACGCCAGTCGGAAACTTAACGAAACCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCAACCCCAGCCCACCC‑GGGTTGGTGGTaaat                                                                                                                                         >  1:2774119/1‑148 (MQ=255)
              ttAACGAATTCACGCCAGTCGGAAACTTAACGAAACCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑GGTTTGGTGGTAAAGa                                                                                                                                        >  1:4333492/1‑149 (MQ=255)
                aaCGAATTCACGCCAGTCGGAAACTTAACGAAACCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAAc                                                                                                                                      <  2:1319776/149‑1 (MQ=255)
                 aCGAATTCACGCCAGTCGGAAACTTAACGAAACCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑AGTTTGGTGGTAAAGAACg                                                                                                                                     >  2:8795093/1‑149 (MQ=255)
                  cGAATTCACGCCAGTCGGAAACTTAACGAAACCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACgg                                                                                                                                    <  1:3798939/149‑1 (MQ=255)
                    aaTTCACGCCAGTCGGAAACTTAACGAAACCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCCCCCCACCC‑CGGTTGGTGGTaaaaaaacgtc                                                                                                                                  >  1:456142/1‑144 (MQ=255)
                     aTTCACGCCAGTCGGAAACTTAACGAAACCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGACACGTTCCATGATGCGTGTCACCAGCACCAGCCCCCCCCCCCCCCCCCCC‑GGGGTGGGGGGAAAGAACGGTCg                                                                                                                                 >  2:3793953/1‑149 (MQ=255)
                      ttCACGCCAGTCGGAAACTTAACGAAACCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCACCCCACCC‑GGGTTGGGGGTAAAGAACGGTCgc                                                                                                                                >  2:5574238/1‑148 (MQ=255)
                        cACGCCAGTCGGAAACTTAACGAAACCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCACCCCACCC‑GGTTTGGGGGTAAAGAACCGGCGaaa                                                                                                                              >  1:7046968/1‑149 (MQ=39)
                          cGCCAGTCGGAAACTTAACGAAACCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑GGTTTGGTGGTAAAGAAAGGTCGAAAAg                                                                                                                            >  2:1795338/1‑149 (MQ=255)
                          cGCCAGTCGGAAACTTAACGAAACCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑GGGTTGGTGGTAAAGAACGGTCGAAAAg                                                                                                                            >  2:5782823/1‑149 (MQ=255)
                          cGCCAGTCGGAAACTTAACGAAACCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCACCCCACCC‑GGGTTGGGGGGAAAGAACGGGGGAAAAg                                                                                                                            >  1:3395800/1‑149 (MQ=255)
                          cGCCAGTCGGAAACTTAACGAAACCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCAACCCCAGCCCAACC‑TGTTTTGTGGTAAATAAAGGTCGaaaat                                                                                                                            >  1:1704318/1‑148 (MQ=255)
                           gCCAGTCGGAAACTTAACGAAACCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGc                                                                                                                           <  1:3874050/149‑1 (MQ=255)
                           gCCAGTCGGAAACTTAACGAAACCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCACCCCACCC‑AGTTTGGGGGGAAAGAACGGTCGTAAAGc                                                                                                                           >  1:799360/1‑149 (MQ=255)
                            ccAGTCGGAAACTTAACGAAACCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGcc                                                                                                                          <  2:6187464/149‑1 (MQ=255)
                            ccAGTCGGAAACTTAACGAAACCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCAACCCCAGCCCACCC‑CGTTGGGGGGGAAAAAACGGGAGAAAAGcc                                                                                                                          >  2:2390809/1‑149 (MQ=38)
                             cAGTCGGAAACTTAACGAAACCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCa                                                                                                                         <  2:5217238/149‑1 (MQ=255)
                                  ggAAACTTAACGAAACCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACgc                                                                                                                    >  2:2856880/1‑149 (MQ=255)
                                        ttAACGACACCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCCCCCCCCCC‑AGGGTGGGGGTGAAGAACCGGCGCAAAGCCCAACgcggctgc                                                                                                              >  2:1937896/1‑149 (MQ=255)
                                            cGAAACCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCACCCCCCCC‑CGGTTGGGGGTTAAGAACCGGCGAAAATCCAAAAGCTGCTGctcgt                                                                                                          >  1:2902044/1‑147 (MQ=37)
                                              aaaCCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCCACCCCACCCCACCCGCGTTTGGGGTTAATAAACGGGCCAAAA‑CCCTAAGCGGCAGCGCTTCg                                                                                                        >  1:2249793/1‑149 (MQ=255)
                                              aaaCCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCACCCCAACC‑GGGTTGGTGGTAAAAAACCGGCGAAAAACCAAACGCGGCAGCTCttgg                                                                                                        >  2:1515458/1‑147 (MQ=255)
                                                 cccTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTc                                                                                                     >  1:8100788/1‑149 (MQ=255)
                                                   cTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑t                                                                                                  <  1:5845040/149‑1 (MQ=255)
                                                          cttGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTg                                                                                          <  1:5393189/147‑1 (MQ=255)
                                                          cATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCACCCCACCC‑GGTTTGGTGGTAAATAACGGTCGGAAAGCCAAACCCAGCGGCTCGTCGGTAA‑TGGCC‑GTg                                                                                          >  2:1962977/1‑149 (MQ=255)
                                                            tGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGcc                                                                                        <  1:1242601/149‑1 (MQ=255)
                                                                 ttCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGt                                                                                   <  2:2464560/149‑1 (MQ=255)
                                                                 ttCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGt                                                                                   <  2:2302639/149‑1 (MQ=255)
                                                                 ttCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGt                                                                                   <  2:2039878/149‑1 (MQ=255)
                                                                 ttCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGt                                                                                   <  2:1668895/149‑1 (MQ=255)
                                                                 gtCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGt                                                                                   <  1:5585976/148‑1 (MQ=255)
                                                                  tCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCCCCCCACCC‑GGTTTGGTGGTAAAGAACGGTCGAAAAGCCCAAAGCAGCGGCTCGTCGTTCA‑TGGCC‑GTGGCCTTggg                                                                                  >  1:1100264/1‑147 (MQ=255)
                                                                    aCTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCgg                                                                                <  1:3137334/149‑1 (MQ=255)
                                                                     ctgctgctgAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGTTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGa                                                                               <  1:4809146/149‑1 (MQ=255)
                                                                       gctgctgAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCCGCCCCCCC‑GGTTTGGTGGTAAAGAACGGTCGGAAAGCCCTACGCTGCGGCGCTTCGTTCA‑TGCCC‑GTGCCAGTGTCGGACa                                                                             >  2:6881300/1‑149 (MQ=255)
                                                                        ctgctgAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGACAg                                                                            <  2:1301727/149‑1 (MQ=255)
                                                                         tgctgAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCCCCC‑GGTGTGGGGGTAAAGAACGGGCGCAAAGCCATACGCTGCGGCGCGGCGGTGA‑TGCCC‑GTGCCAGTGTGGGACAgg                                                                           >  2:8670350/1‑149 (MQ=255)
                                                                         tgctgAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGACAgg                                                                           <  1:5716705/149‑1 (MQ=255)
                                                                           ctgAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGACAGgcg                                                                         <  1:525575/149‑1 (MQ=255)
                                                                            tgAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCCCCCCACCC‑GGGTTGGTGGTAAAGTAACGTCGCAAAGCCCAACCCGGGTGCTCTTCGTTCA‑TGCCCGTTGCCA‑TGTCGGTCACgcgc                                                                        >  2:4125234/1‑149 (MQ=255)
                                                                            tgAGCCGGACCGTACCGCCGAAACGCTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑GGTTTGGTGGTTAAGAACGGTCGAAAAGCCATACGCAGCGGGTCGTCGTTCA‑TGCCC‑GTGCCCGTGTCGGACAGgcgc                                                                        >  2:6067197/1‑149 (MQ=255)
                                                                                ccGGACCGTACCGCCGAAACGTTCCAAGATGCGTGTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGACAGGCGCAAAg                                                                    <  1:6009535/149‑1 (MQ=255)
                                                                                 cGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGACAGGCGCAAAGt                                                                   <  1:4775631/149‑1 (MQ=255)
                                                                                  ggACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCCGCCCACCC‑GGTTTTGGGGTAAAAAAACGTCGGAAACGCAAAAGCTGCTGGGCTTGGTTAA‑AGACC‑ATGGCCGTGTCGGGCAGGCGCCAAGtg                                                                  >  1:7746582/1‑148 (MQ=255)
                                                                                    aCCGTACCGCCGACACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGACAGGCGCAAAGTCAg                                                                <  1:8792542/149‑1 (MQ=255)
                                                                                       gTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCCCCCCCCGCCCCCCC‑GGGTTGGGGGTTAAGTACGGTGGCAAAGCCCAACGCGGCGGCTCGTCGTTGC‑TGGCC‑ATGCCAATGTCGGGCCGGCGCAAAGTCAGGCt                                                             >  2:2158300/1‑149 (MQ=255)
                                                                                         aCCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCCGCCCACCC‑GGGTTGGGGGTAAAGAACGGGCGAAAAGCCCTACGCGGCTGCTCGTCGGTCA‑TGCCC‑GTGCCATTGGCGGACCGGCGCAAAGTCAggcggc                                                           >  2:4323112/1‑149 (MQ=37)
                                                                                         aCCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑AGTTTGGGGGTAAAGAACGGGCGAAAAGCCAAACGCTGCTGCTCGTCGTTCA‑TGCCC‑GTGCCCATGTCGGACAGGCGCAAAGTCAGGCTgc                                                           >  2:5696375/1‑149 (MQ=38)
                                                                                          ccgccgAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGACAGGCGCAAAGTCAGGCTgcg                                                          <  2:8261779/149‑1 (MQ=255)
                                                                                          ccgccgAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGACAGGCGCAAAGTCAGGCTgcg                                                          <  1:1515458/149‑1 (MQ=255)
                                                                                           cgccgAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGACAGGCGCAAAGTCAGGCTgcgc                                                         <  1:1709988/149‑1 (MQ=255)
                                                                                            gccgAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCCCCCCCCCC‑CGTGTGGGGGTAAATAAACGTGGCAAAGCCAAAACCAGCAGGTCTTCGTTGATTGCCC‑TGCCCATT‑TGGGGCAGGCGCCAAGTGAGGcgggccc                                                        >  2:3739535/1‑143 (MQ=255)
                                                                                             ccgAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGACAGGCGCAAAGTCAGGCTGCGCCg                                                       <  2:7668970/149‑1 (MQ=255)
                                                                                             ccgAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACCGTCGAAAAGCCAAACGCTGCTGCTCTTCGTTCA‑ATCCC‑ATGCCCATGTCGGACAGGCGCAAAGTAAGGCTGCGCCg                                                       >  1:1358217/1‑149 (MQ=38)
                                                                                             ccgAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCACCCCACCC‑GGTTTTGTGGTAAAGAAACGTCGAAAAGCCAAACGCGGCTTCTCGTAGTTCA‑TGCCC‑ATGCCCATGTGGGACAGGCGCAAACTAAGGCAGCGccc                                                       >  1:5043857/1‑148 (MQ=255)
                                                                                               gAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGACAGGCGCAAAGTCAGGCTGCGCCGGt                                                     <  2:5111702/149‑1 (MQ=255)
                                                                                                aaaCGTTCCATGATGCGTTTCACCAGCACCAGCCCCAACCCCATCCCACCC‑TGTTTGGTGGTAAAGAACGGGCGAAAATCCATAAGCTGCTGCTCGTCGTTCA‑TGCCC‑TTGGACTTGTCGGACAGGCGCAAAGTCAGGCTGcggcgggg                                                    >  2:7729005/1‑147 (MQ=38)
                                                                                                 aaCGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGACAGGCGCAAAGTCAGGCTGCGCCGGTtg                                                   <  2:571548/149‑1 (MQ=255)
                                                                                                 aaCGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCAACC‑GGGTTGGTGGTAAATAACGGTCGAAAAGCCAAAAGCTTCTGCTCTTAGTTCA‑TTCCC‑ATGCCATTGTAGGACAGGCGCAAAGTAAGGCTGCGCCGGGtg                                                   >  2:3490237/1‑149 (MQ=255)
                                                                                                   cGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAGGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGACAGGCGCAAAGTCAGGCTGCGCCGGTtgtg                                                 <  1:6769636/149‑1 (MQ=255)
                                                                                                   cGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGACAGGCGCAAAGTCAGGCTGCGCCGGTtgtg                                                 <  2:2299970/149‑1 (MQ=255)
                                                                                                    ggtCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGACAGGCGCAAAGTCAGGCTGCGCCGGTTGTGa                                                <  2:8128195/147‑1 (MQ=255)
                                                                                                    gTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGACAGGCGCAAAGTCAGGCTGCGCCGGTTGTGa                                                <  2:838887/149‑1 (MQ=255)
                                                                                                      tCCATGATGCGTTTCACCAGCACCAGCCCCCCCCCCCCCCCACCC‑GGTTTGGGGGTAAAGAACGGTCGCAAAGCCAAACGCGGCTGGGCGTCGTTCA‑TGCCC‑GTGCCAGTGTCGGACACGCGCCAAGTCACGCGGCGCCCGGTGTGGCg                                              >  2:7040762/1‑149 (MQ=255)
                                                                                                         atgatgCGTTTCACCAGCACCAGCCCCCCCCCCAGCCCACCC‑CGTTTGGGTGTAAATAAACGTCGAAAAACCAAAAGCGGCTGCGATTGGTTCA‑ATCCC‑CTGCCAATGTCGGGCAGGCGCAAAGTCAGGCTGCGCCGGTTGTTTCGTaa                                           >  2:4078676/1‑148 (MQ=255)
                                                                                                             tgCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCAGTTTCGGACAGGCGCAAAGTCAGGCGGCGCCGGTTGTGACGTaccacc                                       >  2:7353212/1‑149 (MQ=255)
                                                                                                               cGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑GGTTTTGTGGTAAATAAACGTCGGAAAGCCAAAAGCGGGTTGGAGTGGTTAA‑ATCCC‑ATGCCAATGTGGGTCAGGCGCCAAATAAGGCGGCGCCCGGTGTGTCGTaacacccc                                     >  2:4005077/1‑147 (MQ=255)
                                                                                                                gTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGACAGGCGCAAAGTCAGGCTGCGCCGGTTGTGACGTACCACCTCg                                    <  2:2766141/149‑1 (MQ=255)
                                                                                                                   tCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGACAGGCGCAAAGTCAGGCTGCGCCGGTTGTGACGTACCACCTCGATa                                 <  1:3739184/149‑1 (MQ=255)
                                                                                                                    caccagcaccagCCCCACCCCCACCCCAACC‑GGTTTTGGTGTAAATAAACGTAGAAAAACCAAAACCTGCAGCTCATCGTTAA‑ATCCC‑ATTCCATTTTCGGACACGCGCCAAGTAACGCGGCGCCGGGTTTTACGTAACCCCACGaaaa                                >  2:1471380/1‑146 (MQ=255)
                                                                                                                          caccagcCCCACCCCCAGCCCACCC‑TGTTTTGTGGTAAATAACGGTCGAAAAGCCAAAAGCGGCTGCTCGTAGGTCA‑TGCCCGTGGCCATT‑TCGGACCGGCGCCAACTCAGGCTGCGCCGGTTGTTACGTACCACCACGATTCGCAAcc                          >  2:7134364/1‑149 (MQ=255)
                                                                                                                           accagcCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGACAGGCGCAAAGTCAGGCTGCGCCGGTTGTGACGTACCACCTCGATACGCAAccg                         <  2:468746/149‑1 (MQ=255)
                                                                                                                              agcCCCACCCCCAGCCCACCC‑CGGGTGGGGGTAAAGAACGGTCGCAAAGCCCGACGCGGCGGGTCGTCGTTCA‑AGCCC‑GTGCCCGTGTCGGCCAGGCGCACAGTCAGGCTGCGCCGGGTGTGGCGGACCACCACGATACGCACccgccc                      >  2:4652420/1‑149 (MQ=255)
                                                                                                                               gcCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGACAGGCGCAAAGTCAGGCTGCGCCGGTTGTGACGTACCACCTCGATACGCAAccgcccg                     <  2:2221124/149‑1 (MQ=255)
                                                                                                                                ccccACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGACAGGCGCAAAGTCAGGCTGCGCCGGTTGTGACGTACCACCTCGATACGCAAccgcccgc                    <  1:2212236/149‑1 (MQ=255)
                                                                                                                                ccccACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGACAGGCGCAAAGTCAGGCTGCGCCGGTTGTGACGTACCACCTCGATACGCAAccgcccgc                    <  2:7444354/149‑1 (MQ=255)
                                                                                                                                  ccACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGACAGGCGCAAAGTCAGGCTGCGCCGGTTGTGACGTACCACCTCGATACGCAACCgcccgccc                  <  2:5533765/149‑1 (MQ=255)
                                                                                                                                   cACCCCCAGCCCACCC‑GGTTTGGGGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCGCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGGCAGGCGCAAAGTCAGGCGGCGCCGGGTGTGACGTACCCCCACGATACGCAACCGCCCGCCCt                 >  2:4920709/1‑149 (MQ=255)
                                                                                                                                    aCCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGACAGGCGCAAAGTCAGGCTGCGCCGGTTGTGACGTACCACCTCGATACGCAACCGCCCGCCCTg                <  2:7582267/149‑1 (MQ=255)
                                                                                                                                       cccAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGACAGGCGCAAAGTCAGGCTGCGCCGGTTGTGACGTACCACCTCGATACGCAACCGCCCGCCCTGCTc             >  2:2042703/1‑149 (MQ=255)
                                                                                                                                        ccAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGACAGGCGCAAAGTCAGGCTGCGCCGGTTGTGACGTACCACCTCGATACGCAACCGCCCGCCCTGCTcc            >  1:3289744/1‑149 (MQ=255)
                                                                                                                                        ccAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGACAGGCGCAAAGTCAGGCTGCGCCGGTTGTGACGTACCACCTCGATACGCAACCGCCCGCCCTGCTcc            >  2:5517495/1‑149 (MQ=255)
                                                                                                                                         cAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGACAGGCGCAAAGTCAGGCTGCGCCGGTTGTGACGTACCACCTCGATACGCAACCGCCCGCCCTGCTCCa           <  1:2545870/149‑1 (MQ=255)
                                                                                                                                           gCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGACAGGCGCAAAGTCAGGCTGCGCCGGTTGTGACGTACCACCTCGATACGCAACCGCCCGCCCTGCTCCATc         >  1:6090828/1‑149 (MQ=255)
                                                                                                                                            cccACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGACAGGCGCAAAGTCAGGCTGCGCCGGTTGTGACGTACCACCTCGATACGCAACCGCCCGCCCTGCTCCATCg        >  1:5095342/1‑149 (MQ=255)
                                                                                                                                                ccc‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGACAGGCGCAAAGTCAGGCTGCGCCGGTTGTGACGTACCACCTCGATACGCAACCGCCCGCCCTGCTCCATCGACTc    >  2:2909528/1‑149 (MQ=255)
                                                                                                                                                  c‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGACAGGCGCAAAGTCAGGCTGCGCCGGTTGTGACGTACCACCTCGATACGCAACCGCCCGCCCTGCTCCATCGACTCCa  >  2:5544663/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                     
AATCCTGATGTCATTTAACGAATTCACGCCAGTCGGAAACTTAACGAAACCCTTGTGCCATGGCCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCCCCACCCCCAGCCCACCC‑TGTTTGGTGGTAAAGAACGGTCGAAAAGCCATACGCTGCTGCTCTTCGTTCA‑TGCCC‑TTGCCATTGTCGGACAGGCGCAAAGTCAGGCTGCGCCGGTTGTGACGTACCACCTCGATACGCAACCGCCCGCCCTGCTCCATCGACTCCA  >  NC_002947/3877658‑3877952

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑