| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,178,139 | G→A | 20.0% | intergenic (‑53/+137) | PP_5410 ← / ← glmU | DeoR family transcriptional regulator/bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,178,139 | 0 | G | A | 20.0% | 37.0 / 4.6 | 20 | intergenic (‑53/+137) | PP_5410/glmU | DeoR family transcriptional regulator/bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase |
| Reads supporting (aligned to +/- strand): ref base G (9/7); new base A (2/2); total (11/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTTACCTCACCCTGCTCGCTGAGCAGAGCCAGAATATTGTGTCGCCGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTGTGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCC > NC_002947/6178016‑6178228 | cTTACCTCACCCTGCTCGCTGAGCAGAGCCAGAATATTGTGTCGCCGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCa < 1:452554/136‑1 (MQ=255) tCACCCTGCTCGCTGAGCAGAGCCAGAATATTGTGTCGCCGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACACGCGATTCGTCAAGCTGt > 2:177061/1‑136 (MQ=255) tCACCCTGCTCGCTGAGCAGAGCCAGAATATTGTGTCGCCGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACACGCGATTCGTCAAGCTGt > 2:174763/1‑136 (MQ=255) cTGCTCGCTGAGCAGAGCCAGAATATTGTGTCGCCGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAAATCCTAAGACGCGCGATTCGTCAAGCTGTCGCTg > 1:209150/1‑136 (MQ=255) tGCTCGCTGAGCAGAGCCAGAATATTGTGTCGCCGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGa > 1:291538/1‑136 (MQ=255) tGCTCGCTGAGCAGAGCCAGAATATTGTGTCGCCGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGa > 1:492192/1‑136 (MQ=255) cGCTGAGCAGAGCCAGAATATTGTGTCGCCGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCtg > 1:223167/1‑136 (MQ=255) cGCTGAGAAGAGCCAGAATATTGTGTCGCCGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATGGTTGAAATCAAAACCTAAGACGCTCGATTCGTCAAGATGTCGATGACCtg > 1:297786/1‑136 (MQ=255) gCTGAGCAGAGCCAGAATATTGTGTCGCCGTTGTTTTGTGTTTCGTTTCGACATTTGCGTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCTATTCGTCAAGCTGTCGCTGACCtgt > 1:58991/1‑136 (MQ=255) gCCAGAATATTGTGTCGCCGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTGTGGATTGTTTg < 1:106245/136‑1 (MQ=255) tgtCGCCGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTGTGGATTGTTTGCTTCTGCTTTGa < 1:113150/136‑1 (MQ=255) tgtCGCCGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTGTGGATTGTTTGCTTCTGCTTTGa < 1:303213/136‑1 (MQ=255) tgtCGCCGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTGTGGATTGTTTGCTTCTGCTTTGa < 1:344624/136‑1 (MQ=255) ccGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTGTGGATTGTTTGCTTCTGCTTTGAGGCgg > 1:440852/1‑136 (MQ=255) cGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTGTGGATTGTTTGCTTCTGCTTTGAGGCGGt > 1:355086/1‑136 (MQ=255) cGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTGTGGATTGTTTGCTTCTGCTTTGAGGCGGt > 1:357690/1‑136 (MQ=255) tcgtttcgACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACACGCGATTCGTCAAGCTGTCGCTGACCTGTGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGc < 1:177061/136‑1 (MQ=255) tcgtttcgACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACACGCGATTCGTCAAGCTGTCGCTGACCTGTGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGc < 1:174763/136‑1 (MQ=255) ttATGTTTCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTGGGGATTGTTTGCTTCTGGTTTGTGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGcc < 2:291538/136‑1 (MQ=255) ttAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTGTGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAACCGCGCCAATAAAAAAGcc < 2:492192/136‑1 (MQ=255) | CTTACCTCACCCTGCTCGCTGAGCAGAGCCAGAATATTGTGTCGCCGTTGTGGTGTGTTTCGTTTCGACATGTGCGTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTGTGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCC > NC_002947/6178016‑6178228 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |