| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 795,629 | G→A | 19.0% | A590T (GCC→ACC) | PP_0680 → | ATP‑dependent protease‑like protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 795,629 | 0 | G | A | 19.0% | 43.3 / 4.9 | 21 | A590T (GCC→ACC) | PP_0680 | ATP‑dependent protease‑like protein |
| Reads supporting (aligned to +/- strand): ref base G (7/10); new base A (2/2); total (9/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.34e-01 | |||||||||||
ACGGGTGCTGGACGACATGCTCGCCGGCATCATCCTGATCGACACGGAGGGCGCGGCCATCGGCAAGTGCAACGGGCTGACCGTGCTTGAAGTGGGTGACTCGGCGTTCGGCATGCCCGCGCGTATTTCGGCCACCGTCTACCCCGGCGGCAGCGGTATTGTCGATATCGAGCGTGAGGTCAACCTTGGCCAGCCGATCCACTCCAAAGGGGTGATGATCCTCACCGGTTACCTGGG > NC_002947/795499‑795735 | aCGGGTGCTGGACGACATGCTCGCCCGCATCATCCTGATCGACACGGAGGGCGCGGCCATCGGCAAGTGCAACGGGCTGACCGTGCTTGAAGTGGGTGACTCGGCGTTCGGCATGCCCGCGCGTATTTCGGCCAcc > 1:405342/1‑136 (MQ=255) gacgacATGCTCGCCGGCATCATCCTGATCGACACGGAGGGCGCGGCCATCGGCAAGTGCAACGGGCTGACCGTGCTTGAAGTGGGTGACTCGGCGTTCGGCATGCCCGCGCGTATTTCGGCCACCGTCTACCCcg > 2:452421/1‑136 (MQ=255) acATGCTCGCCGGCATCATCCTGATCGACACGGAGGGCGCGGCCATCGGCAAGTGCAACGGGCTGACCGTGCTTGAAGTGGGTGACTCGGCGTTCGGCATGCCCGCGCGTATTTCGGCCACCGTCTACCCcggcgg < 2:269600/136‑1 (MQ=255) tCGCCGGCATCATCCTGATCGACACGGAGGGCGCGGCCATCGGCAAGTGCAACGGGCTGACCGTGCTTGAAGTGGGTGACTCGGCGTTCGGCATGCCCGCGCGTATTTCGGCCACCGTCTACCCCGGCGGCAGCgg < 1:149021/136‑1 (MQ=255) ggCATCATCCTGATCGACACGGAGGGCGCGGCCATCGGCAAGTGCAACGGGCTGACCGTGCTTGAAGTGGGTGACTCGGCGTTCGGCATGCCCGCGCGTATTTCGGCCACCGTCTACCCCGGCGGCAGCGGTATTg < 1:235868/136‑1 (MQ=255) acacGGAGGGCGCGGCCATCGGCAAGTGCAACGGGCTGACCGTGCTTGAAGTGGGTGACTCGGCGTTCGGCATGCCCGCGCGTATTTCGGCCACCGTCTACCAATTATTCAGCGGTATTGTCGATATCGAggttta < 1:36627/136‑6 (MQ=255) ggCCATCGGCAAGTGCAACGGGCTGACCGTGCTTGAAGTGGGTGACTCGGCGTTCGGCATGCCCGCGCGTATTTCGGCCACCGTCTACCCCGGCGGCAGCGGTATTGTCGATATCGAGCGTGAGGTCAACCTTGGc < 1:286675/136‑1 (MQ=255) gCCATCGGCAAGTGCAACGGGCTGACCGTGCTTGAAGTGGGTGACTCGGCGTTCGGCATGCCCGCGCGTATTTCGGCCACCGTCTACCCCGGCGGCAGCGGTATTGTCGATATCGAGCGTGa < 2:461788/122‑1 (MQ=255) gCCATCGGCAAGTGCAACGGGCTGACCGTGCTTGAAGTGGGTGACTCGGCGTTCGGCATGCCCGCGCGTATTTCGGCCACCGTCTACCCCGGCGGCAGCGGTATTGTCGATATCGAGCGTGa > 1:461788/1‑122 (MQ=255) cGGCAAGTGCAACGGGCTGACCGTGCTTGAAGTGGGTGACTCGGCGTTCGGCATGCCCGCGCGTATTTCGGCCACCGTCTACCCCGGCGGCAGCGGTATTGTCGATATCGAGCGTGAGGTCAACCTTGGCCAGCCg < 1:452421/136‑1 (MQ=255) gCAAGTGCAACGGGCTGACCGTGCTTGAAGTGGGTGACTCGGCGTTCGGCATGCCCGCGCGTATTTCGGCCACCGTCTACCCCGGCGGCAGCGGTATTGTCGATATCGAGCGTGAGGTCAACCTTGGCCAGCCGAt < 2:194646/136‑1 (MQ=255) cAACGGGCTGACCGTGCTTGAAGTGGGTGACTCGGCGTTCGGCATGCCCGCGCGTATTTCGGCCACCGTCTACCCCGGCGGCAGCGGTATTGTCGATATCGAGCGTGAGGTCCACCTTGGCCAGCCGATCCACTcc > 1:293248/1‑136 (MQ=255) cAACGGGCTGACCGTGCTTGAAGTGGGTGACTCGGCGTTCGGCATGCCCGCGCGTATTTCGGCCACCGTCTACCCCGGCGGCAGCGGTATTGTCGATATCGAGCGTGAGGTCAACCTTGGCCAGCCGATCCACTcc > 1:295470/1‑136 (MQ=255) ccGTGCTTGAAGTGGGTGACTCGGCGTTCGGCATGCCCGCGCGTATTTCGGCCACCGTCTACCCCGGCGGCAGCGGTATTGTCGATATCGAGCGTGAGGTCAACCTTGGCCAGCCGATCCACTCCAAAGGGGtgat > 2:447789/1‑136 (MQ=255) ccGTGCTTGAAGTGGGTGACTCGGCGTTCGGCATGCCCGCGCGTATTTCGACCACCGTCTACCCCGGCGGCAGCGGTATTGTCGATATCGAGCGTGAGGTCAACCTTGGCCAGCCGATCCACTCCAAAGGGGtgat > 1:327813/1‑136 (MQ=255) ccGTGCTTGAAGTGGGTGACTCGGCGTTCGGCATGCCCGCGCGTATTTCGACCACCGTCTACCCCGGCGGCAGCGGTATTGTCGATATCGAGCGTGAGGTCAACCTTGGCCAGCCGATCCACTCCAAAGGGGtgat > 1:325180/1‑136 (MQ=255) tGAAGTGGGTGACTCGGCGTTCGGCATGCCCGCGCGTATTTCGGCCACCGTCTACCCCGGCGGCAGCGGTATTGTCGATATCGAGCGTGAGGTCAACCTTGGCCAGCCGATCCACTCCAAAGGGGTGATGATCCTc > 1:405010/1‑136 (MQ=255) aCTCGGCGTTCGGCATGCCCGCGCGTATTTCGACCACCGTCTACCCCGGCGGCAGCGGTATTGTCGATATCGAGCGTGAGGTCAACCTTGGCCAGCCGATCCACTCCAAAGGGGTGATGATCCTCACCGGTTACCt < 2:325180/136‑1 (MQ=255) aCTCGGCGTTCGGCATGCCCGCGCGTATTTCGACCACCGTCTACCCCGGCGGCAGCGGTATTGTCGATATCGAGCGTGAGGTCAACCTTGGCCAGCCGATCCACTCCAAAGGGGTGATGATCCTCACCGGTTACCt < 2:327813/136‑1 (MQ=255) tCGGCGTTCGGCATGCCCGCGCGTATTTCGGCCACCGTCTACCCCGGCGGCAGCGGTATTGTCGATATCGAGCGTGAGGTCAACC‑TGGCCAGCCGATCCACTCCAAAGGGGTGATGATCCTCACCGGTTACCCggg < 2:389334/136‑1 (MQ=255) cGGCGTTCGGCATGCCCGCGCGTATTTCGGCCACCGTCTACCCCGGCGGCAGCGGTATTGTCGATATCGAGCGTGAGGTCAACCTTGGCCAGCCGATCCACTCCAAAGGGGTGATGATCCTCACCGGTTACCTggg < 2:405342/136‑1 (MQ=255) | ACGGGTGCTGGACGACATGCTCGCCGGCATCATCCTGATCGACACGGAGGGCGCGGCCATCGGCAAGTGCAACGGGCTGACCGTGCTTGAAGTGGGTGACTCGGCGTTCGGCATGCCCGCGCGTATTTCGGCCACCGTCTACCCCGGCGGCAGCGGTATTGTCGATATCGAGCGTGAGGTCAACCTTGGCCAGCCGATCCACTCCAAAGGGGTGATGATCCTCACCGGTTACCTGGG > NC_002947/795499‑795735 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |