| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,505,477 | G→T | 22.3% | V311V (GTG→GTT) | zapE → | nucleoside triphosphate hydrolase domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,505,477 | 0 | G | T | 22.3% | 37.0 / 3.5 | 18 | V311V (GTG→GTT) | zapE | nucleoside triphosphate hydrolase domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base G (5/9); new base T (2/2); total (7/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.51e-01 | |||||||||||
GGGCAAGATCTTCCACGCCGTATTGCTGAGCAACGTGGAGCAGATGGGCGTCACCACCGACGACATCGCCCGCCGCTTCATCAACATGGTGGACGAGTTCTACGATCGCAACGTCAAGCTGATCATCTCGGCCGAGGTGGAGTTGAAGGACCTGTATACCGGTGGGCGTCTGAGCTTCGAGTTCCAGCGTACCCTGAGCCGGTTGCTGGAGATGCAGTCGC > NC_002947/1505387‑1505607 | gggCAAGATCTTCCACGCCGTATTGCTGAGCAACGTGGAGCAGATGGGCGTCACCACCGACGACATCGCCCGCCGCTTCATCAACATGGTGGACGAGTTCTACGATCGCAACGTCAAGCTGATCATCTCGGCCGAg < 1:252341/136‑1 (MQ=255) ggCAAGATCTTCCACGCCGTATTGCTGAGCAACGTGGAGCAGATGGGCGTCACCACCGACGACATCGCCCGCCGCTTCATCAACATGGTGGACGAGTTCTACGATCGCAACGTCAAGCTGATCATCTCGGCCGAgg < 2:14748/136‑1 (MQ=255) cTTCCACGCCGTATTGCTGAGCAACGTGGAGCAGATGGGCGTCACCACCGACGACATCGCCCGCCGCTTCATCAACATTGTGGACGAGTTCTACGATCGCAACGTCAAGCTGATCATCTCGGCCGAGGTGGAGTTg < 1:463122/136‑1 (MQ=255) cTTCCACGCCGTATTGCTGAGCAACGTGGAGCAGATGGGCGTCACCACCGACGACATCGCCCGCCGCTTCATCAACATGGTGGACGAGTTCTACGATCGCAACGTCAAGCTGATCATCTCGGCCGAGGTGGAGTTg < 2:357771/136‑1 (MQ=255) cTTCCACGCCGTATTGCTGAGCAACGTGGAGCAGATGGGCGTCACCACCGACGACATCGCCCGCCGCTTCATCAACATGGTGGACGAGTTCTACGATCGCAACGTCAAGCTGATCATCTCGGCCGAGGTGGAGTTg > 2:44890/1‑136 (MQ=255) ccACGCCGTATTGCTGAGCAACGTGGAGCAGATGGGCGTCACCACCGACGACATCGCCCGCCGCTTCATCAACATGGTGGACGAGTTCTACGATCGCAACGTCAAGCTGATCATCTCGGCCGAGGTGGAGTTGAAg < 1:26166/136‑1 (MQ=255) ccACGCCGTATTGCTGAGCAACGTGGAGCAGATGGGCGTCACCACCGACGACATCGCCCGCCGCTTCATCAACATGGTGGACGAGTTCTACGATCGCAACGTCAAGCTGATCATCTCGGCCGAGGTGGAGTTGAAg < 2:180240/136‑1 (MQ=255) ccACGCCGTATTGCTGAGCAACGTGGAGCAGATGGGCGTCACCACCGACGACATCGCCCGCCGCTTCATCAACATGGTGGACGAGTTCTACGATCGCAACGTCAAGCTGATCATCTCGGCCGAGGTGGAGTTGAAg < 2:287604/136‑1 (MQ=255) tGGAGCAGATGGGCGTCACCACCGACGACATCGCCCGCCGCTTCATCAACATGGTGGACGAGTTCTACGATCGCAACGTCAAGCTGATCATCTCGGCCGAGGTGGAGTTg < 1:414936/110‑1 (MQ=255) tGGAGCAGATGGGCGTCACCACCGACGACATCGCCCGCCGCTTCATCAACATGGTGGACGAGTTCTACGATCGCAACGTCAAGCTGATCATCTCGGCCGAGGTGGAGTTg > 2:414936/1‑110 (MQ=255) ggAGCAGATGGGCGTCACCACCGACGACATCGCCCGCCGCTTCATCAACATGGTTGACGAGTTCTACGATCGCAACGTCAAGCTGATCATCTCGGCCGAGGTGGAGTTGAAGGACCTGTATACCGGTGGGCGTCTg > 1:271741/1‑136 (MQ=255) ggAGCAGATGGGCGTCACCACCGACGACATCGCCCGCCGCTTCATCAACATGGTTGACGAGTTCTACGATCGCAACGTCAAGCTGATCATCTCGGCCGAGGTGGAGTTGAAGGACCTGTATACCGGTGGGCGTCTg > 1:48118/1‑136 (MQ=255) ggAGCAGATGGGCGTCACCACCGACGACATCGCCCGCCGCTTCATCAACATGGTGGACGAGTTCTACGATCGCAACGTCAAGCTGATCATCTCGGCCGAGGTGGAGTTGAAGGACCTGTATACCGGTGGGCGTCTg > 1:147466/1‑136 (MQ=255) ggAGCAGATGGGCGTCACCACCGACGACATCGCCCGCCGCTTCATCAACATGGTGGACGAGTTCTACGATCGCAACGTCAAGCTGATCATCTCGGCCGAGGTGGAGTTGAAGGACCTGTATACCGGTGGGCGTCTg > 2:430137/1‑136 (MQ=255) tGGGCGTCACCACCGACGACATCGCCCGCCGCTTCATCAACATGGTGGACGAGTTCTACGATCGCAACGTCAAGCTGATCATCTCGGCCGAGGTGGAGTTGAAGGACCTGTATACCGGTGGGCGTCTGAGCTTCGa < 1:430137/136‑1 (MQ=255) ccgccgCTTCATCAACATGGTGGACGAGTTCTACGATCGCAACGTCAAGCTGATCATCTCGGCCGAGGTGGAGTTGAAGGACCTGTATACCGGTGGGCGTCTGAGCTTCGAGTTCCAGCGTACCCTGAGCCGGTTg > 1:361992/1‑136 (MQ=255) aTGGTTGACGAGTTCTACGATCGCAACGTCAAGCTGATCATCTCGGCCGAGGTGGAGTTGAAGGACCTGTATACCGGTGGGCGTCTGAGCTTCGAGTTCCAGCGTACCCTGAGCCGGTTGCTGGAGATGCAGTCGc < 2:271741/136‑1 (MQ=255) aTGGTTGACGAGTTCTACGATCGCAACGTCAAGCTGATCATCTCGGCCGAGGTGGAGTTGAAGGACCTGTATACCGGTGGGCGTCTGAGCTTCGAGTTCCAGCGTACCCTGAGCCGGTTGCTGGAGATGCAGTCGc < 2:48118/136‑1 (MQ=255) | GGGCAAGATCTTCCACGCCGTATTGCTGAGCAACGTGGAGCAGATGGGCGTCACCACCGACGACATCGCCCGCCGCTTCATCAACATGGTGGACGAGTTCTACGATCGCAACGTCAAGCTGATCATCTCGGCCGAGGTGGAGTTGAAGGACCTGTATACCGGTGGGCGTCTGAGCTTCGAGTTCCAGCGTACCCTGAGCCGGTTGCTGGAGATGCAGTCGC > NC_002947/1505387‑1505607 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |