| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,882,673 | C→A | 15.9% | Q85K (CAG→AAG) | PP_1683 → | MarR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,882,673 | 0 | C | A | 15.9% | 74.7 / 2.1 | 25 | Q85K (CAG→AAG) | PP_1683 | MarR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (10/11); new base A (2/2); total (12/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.41e-01 | |||||||||||
GCAGCGGCTCGACCGACCCAGCATCACAACCCTGGCCGAAGCCATGGGGCTCGAGCGCAGTACCCTGGGCCGCAACCTGCGTGTGCTGGAGGCGGATGGGCTGGTAGCACTGGGCGAGGGCGACGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTG > NC_002947/1882546‑1882801 | gCAGCGGCTCGACCGACCCAGCATCACAACCCTGGCCGAAGCCATGGGGCTCGAGCGCAGTACCCTGGGCCGCAACCTGCGTGTGCTGGAGGCGGATGGGCTGGTAGCACTGGGCGAGGGCGACGACCAGCGTAAc > 2:270138/1‑136 (MQ=255) cAGCGGCTCGACCGACCCAGCATCACAACCCTGGCCGAAGCCATGGGGCTCGAGCGCAGTACCCTGGGCCGCAACCTGCGTGTGCTGGAGGCGGATGGGCTGGTAGCACTGGGCGAGGGCGACGACCAGCGTAAcc < 1:84283/136‑1 (MQ=255) cAGCGGCTCGACCGACCCAGCATCACAACCCTGGCCGAAGCCATGGGGCTCGAGCGCAGTACCCTGGGCCGCAACCTGCGTGTGCTGGAGGCGGATGGGCTGGTAGCACTGGGCGAGGGCGACGACCAGCGTAAcc < 1:369273/136‑1 (MQ=255) accgaccCAGCATCACAACCCTGGCCGAAGCCATGGGGCTCGAGCGCAGTACCCTGGGCCGCAACCTGCGTGTGCTAGAGGCGGATGGGCTGGTAGCACTGGGCGAGGGCGACGACCAGCGTAACCGCGTGGTGCt > 2:119601/1‑136 (MQ=255) aCCCTGGCCGAAGCCATGGGGCTCGAGCGCAGTACCCTGGGCCGCAACCTGCGTGTGCTGGAGGCGGATGGGCTGGTAGCACTGGGCGAGGGCGACGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTa < 1:483355/136‑1 (MQ=255) cATGGGGCTCGAGCGCAGTACCCTGGGCCGCAACCTGCGTGTGCTGGAGGCGGATGGGCTGGTAGCACTGGGCGAGGGCGACGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCAc > 1:439/1‑136 (MQ=255) ggCTCGAGCGCAGTACCCTGGGCCGCAACCTGCGTGTGCTGGAGGCGGATGGGCTGGTAGCACTGGGCGAGGGCGACGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGc < 1:106594/136‑1 (MQ=255) gCCGCAACCTGCGTGTGCTGGAGGCGGATGGGCTGGTAGCACTGGGCGAGGGCGACGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGc > 2:22846/1‑136 (MQ=255) aaCCTGCGTGTGCTGGAGGCGGATGGGCTGGTAGCACTGGGCGAGGGCGACGACAAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCAGGCCTGGGAGCAGGCCCAGa > 1:259192/1‑136 (MQ=255) aaCCTGCGTGTGCTGGAGGCGGATGGGCTGGTAGCACTGGGCGAGGGCGACGACAAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCAGGCCTGGGAGCAGGCCCAGa > 1:9906/1‑136 (MQ=255) ccTGCGTGTGCTGGAGGCGGATGGGCTGGTAGCACTGGGCGAGGGCGACGACCAGCGTAAcc > 2:401659/1‑62 (MQ=255) ccTGCGTGTGCTGGAGGCGGATGGGCTGGTAGCACTGGGCGAGGGCGACGACCAGCGTAAcc < 1:401659/62‑1 (MQ=255) cTGCGTGTGCTGGAGGCGGATGGGCTGGTAGCACTGGGCGAGGGCGACGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAag < 1:222664/136‑1 (MQ=255) gCTGGAGGCGGATGGGCTGGTAGCACTGGGCGAGGGCGACGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACGCGGGCTGGGAGCAGGCCCAGAAAGAGCTGGtt < 2:439/136‑1 (MQ=255) gCTGGAGGCGGATGGGCTGGTAGCACTGGGCGAGGGCGACGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGtt < 1:214469/136‑1 (MQ=255) gCTGGAGGCGGATGGGCTGGTAGCACTGGGCGAGGGCGACGACAAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCAGGCCTGGGAGCAGGCCCAGAAAGAGCTGGtt < 2:259192/136‑1 (MQ=255) gCTGGAGGCGGATGGGCTGGTAGCACTGGGCGAGGGCGACGACAAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCAGGCCTGGGAGCAGGCCCAGAAAGAGCTGGtt < 2:9906/136‑1 (MQ=255) gCTAGAGGCGGATGGGCTGGTAGCACTGGGCGAGGGCGACGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGtt < 1:119601/136‑1 (MQ=255) gATGGGCTGGTAGCACTGGGCGAGGGCGACGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCg < 1:270138/136‑1 (MQ=255) tGGTAGCACTGGGCGAGGGCGACGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGtctg > 1:145933/1‑133 (MQ=255) gCACTGGGCGAGGGCGACGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACtttt > 1:407388/1‑68 (MQ=255) gCACTGGGCGAGGGCGACGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACtttt < 2:407388/68‑1 (MQ=255) agggcgaCGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACt > 1:274816/1‑136 (MQ=255) gcgaCGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGt > 2:272074/1‑136 (MQ=255) cgacgaCCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGAACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTg > 1:44186/1‑136 (MQ=255) | GCAGCGGCTCGACCGACCCAGCATCACAACCCTGGCCGAAGCCATGGGGCTCGAGCGCAGTACCCTGGGCCGCAACCTGCGTGTGCTGGAGGCGGATGGGCTGGTAGCACTGGGCGAGGGCGACGACCAGCGTAACCGCGTGGTGCTGTTGACCGCGGCGGGTAAGCAACTTTTGCACGTTGCCCACCCGGCCTGGGAGCAGGCCCAGAAAGAGCTGGTTGAACGGCTCGGGGTGGGGCAGCGGGATGAACTGGTG > NC_002947/1882546‑1882801 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |