| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,902,057 | C→A | 38.2% | W3L (TGG→TTG) | sugE ← | transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,902,057 | 0 | C | A | 38.2% | 16.9 / 4.5 | 13 | W3L (TGG→TTG) | sugE | transporter |
| Reads supporting (aligned to +/- strand): ref base C (3/5); new base A (3/2); total (6/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.92e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CAGCAGGCCCAGGCTGATGACCATGGCGCCGACGGTAAGGACAGTGGGTAGCGGTCGAGTGAAACCGTCGGTGTATTTGAGGCCGACGGCCCAGCCGACCTCGAACAGGCCGGCGAAAAACAGGATGATCCAGGACATGAGTGTGTCTCCATCGTTTGAATGATGGGGCCGTCCCCGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCT > NC_002947/1901927‑1902188 | cagcaggcccagGCTGATGACCATGGCGCCGACGGTAAGGACAGTGGGTAGCGGTCGAGTGAAACCGTCGGTGTATTTGAGGCCGACGGCCCAGCCGACCTCGAACAGGCCGGCGAAAAACAGGATGATCCAGGAc < 1:470168/136‑1 (MQ=255) agGCTGATGACCATGGCGCCGACGGTAAGGACAGTGGGTAGCGGTCGAGTGACACCGTCGGTGTATTTGAGGCCGACGGCCCAGCCGACCTCGAACAGGCCGGCGAAAAACAGGATGATCAAGGACATGAgtgggg > 2:382797/1‑133 (MQ=255) agGCTGATGACCATGGCGCCGACGGTAAGGACAGTGGGTAGCGGTCGAGTGAAACCGTCGGTGTATTTGAGGCCGACGGCCCAGCCGACCTCGAACAGGCCGGCGAAAAACAGGATGATCAAGGACATGAgtgtgt > 2:380355/1‑136 (MQ=255) cTGATGACCATGGCGCCGACGGTAAGGACAGTGGGTAGCGGTCGAGTGAAACCGTCGGTGTATTTGAGGCCGACGGCCCAGCCGACCTCGAACAGGCCGGCGAAAAACAGGATGATCAAGGACATGAGTGTGtctc > 2:429348/1‑136 (MQ=255) aCCATGGCGCCGACGGTAAGGACAGTGGGTAGCGGTCGAGTGAAACCGTCGGTGTATTTGAGGCCGACGGCCCAGCCGACCTCGAACAGGCCGGCGAAAAACAGGATGATCCAGGACATGAGTGTGTCTCCATCGt > 1:403394/1‑136 (MQ=255) gACGGTAAGGACAGTGGGTAGCGGTCGAGTGAAACCGTCGGTGTATTTGAGGCCGACGGCCCAGCCGACCTCGAACAGGCCGGCGAAAAACAGGATGATCCAGGACATGAGTGTGTCTCCATCGTTTGAATGATgg < 2:311838/136‑1 (MQ=255) tGAAACCGTCGGTGTATTTGAGGCCGACGGCCCAGCCGACCTCGAACAGGCCGGCGAAAAACAGGATGATCCAGGACATGAGTGTGTCTCCATCGTTTGAATGATGGGGCCGTCCCCGGAGTGGTCACGCGGTGcg > 1:259183/1‑136 (MQ=255) tGAAACCGTCGGTGTATTTGAGGCCGACGGCCCAGCCGACCTCGAACAGGCCGGCGAAAAACAGGATGATCCAGGACATGAGTGTGTCTCCATCGTTTGAATGATGGGGCCGTCCCCGGAGTGGTCACGCGGTGcg > 1:64499/1‑136 (MQ=255) tGAAACCGTCGGTGTATTTGAGGCCGACGGCACAGCCGACCTCGAACAGGCCGGCGAAAAACATGATGATCCAGGACATGAGTGTGTCTCCATCGTTTGAATGATGGGGCCGTCCCCGGAGTGGTCACGCGGTGcg < 1:480818/136‑1 (MQ=255) cAGGCCGGCGAAAAACAGGATGATCCAGGACATGAGTGTGTCTCCATCGTTTGAATGATGGGGCCGTCCCCGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGc < 2:233603/136‑1 (MQ=255) gatCCAGGACATGAGTGTGTCTCCATCGTTTGAATGATGGGGCCGTCCCCGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCt < 1:38423/136‑1 (MQ=255) gatCAAGGACATGAGTGTGTCTCCATCGTTTGAATGATGGGGCCGTCCCCGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCt < 1:380355/136‑1 (MQ=255) gatCAAGGACATGAGTGTGTCTCCATCGTGTGAATGAGGGGGCCGTCCCCGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCt < 1:382797/136‑1 (MQ=255) | CAGCAGGCCCAGGCTGATGACCATGGCGCCGACGGTAAGGACAGTGGGTAGCGGTCGAGTGAAACCGTCGGTGTATTTGAGGCCGACGGCCCAGCCGACCTCGAACAGGCCGGCGAAAAACAGGATGATCCAGGACATGAGTGTGTCTCCATCGTTTGAATGATGGGGCCGTCCCCGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCT > NC_002947/1901927‑1902188 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |