| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,928,178 | G→T | 19.0% | F19L (TTC→TTA) | PP_1722 ← | ABC transporter ATP‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,928,178 | 0 | G | T | 19.0% | 55.4 / 3.2 | 21 | F19L (TTC→TTA) | PP_1722 | ABC transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base G (11/6); new base T (2/2); total (13/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.18e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCGTCGAGCAGTATCTGCCCGCTGTCCACCGAGGTCAGCCCGGCAATGCAGCGCAGCAGGGTGGACTTGCCGCAGCCGGACGGGCCGAGCAGGGTGACGAATTCGCCGCGTTCGATGTGGCAGTCGATGCGCTCGAACACCGGGCTGCCGGCGTAGCTTTTCTGCAGTTTCTGTACGCTGACGAAGCTCATGTCAGGTCTTGTCCTTGTTCAGGCGGTTGGCGACCCAGGTCAGTACCAGCACGAAGGCGAAGTAGGAGATGACCAGC > NC_002947/1928044‑1928311 | ccGTCGAGCAGTATCTGCCCGCTGTCCACCGAGGTCAGCCCGGCAATGCAGCGCAGCAGGGTGGACTTGCCGCAGCCGGACGGGCCGAGCAGGGTGACGAATTCGCCGCGTTCGATGTGGCAGTCGATGCGCTCGa > 1:4031/1‑136 (MQ=255) aGCAGTATCTGCCCGCTGTCCACCGAGGTCAGCCCGGCAATGCAGCGCAGCAGGGTGGACTTGCCGCAGCCGGACGGGCCGAGCAGGGTGACGAATTCGCCGCGTTCGATGTGGCAGTCGATGCGCTCGAACACCg > 2:192748/1‑136 (MQ=255) tCCACCGAGGTCAGCCCGGCAATGCAGCGCAGCAGGGTGGACTTGCCGCAGCCGGACGGGCCGAGCAGGGTGACGAATTCGCCGCGTTCGATGTGGCAGTCGATGCGCTCGAACACCGGGCTGCCGGCGTAGCttt > 1:116292/1‑136 (MQ=255) tCCACCGAGGTCAGCCCGGCAATGCAGCGCAGCAGGGTGGACTTGCCGCAGCCGGACGGGCCGAGCAGGGTGACGAATTCGCCGCGTTCGATGTGGCAGTCGATGCGCTCGAACACCGGGCTGCCGGCGTAGCttt > 2:176841/1‑136 (MQ=255) cccGGCAATGCAGCGCAGCAGGGTGGACTTGCCGCAGCCGGACGGGCCGAGCAGGGTGACGAATTCGCCGCGTTCGATGTGGCAGTCGATGCGCTCGAACACCGGGCTGCCGGCGTAGCTTTTCTGCAGTTTCTGt < 2:116292/136‑1 (MQ=255) gcagGGTGGACTTGCCGCAGCCGGACGGGCCGAGCAGGGTGACGAATTCGCCGCGTTCGATGTGGCAGTCGATGCGCTCGAACACCGGGCTGCCGGCGTAGCTTTTCTGCAGTTTCTGTACGCTGACGAAGCTCAt < 1:503272/136‑1 (MQ=255) gcagGGTGGACTTGCCGCAGCCGGACGGGCCGAGCAGGGTGACGAATTCGCCGCGTTCGATGTGGCAGTCGATGCGCTCGAACACCGGGCTGCCGGCGTAGCTTTTCTGCAGTTTCTGTACGCTGACGAAGCTCAt < 1:498404/136‑1 (MQ=255) ggACTTGCCGCAGCCGGACGGGCCGAGCAGGGTGACGAATTCGCCGCGTTCGATGTGGCAGTCGATGCGCTCGAACACCGGGCTGCCGGCGTAGCTTTTCTGCAGTTTCTGTACGCTGACGAAGCTCATGTCAGGt > 2:128489/1‑136 (MQ=255) aCTTGCCGCAGCCGGACGGGCCGAGCAGGGTGACGAATTCGCCGCGTTCGATGTGGCAGTCGATGCGCTCGAACACCGGGCTGCCGGCGTAGCTTTTCTGCAGTTTCTGTACGCTGACGAAGCTCATGTCAGGTCt > 1:467538/1‑136 (MQ=255) gACGGGCCGAGCAGGGTGACGAATTCGCCGCGTTCGATGTGGCAGTCGATGCGCTCTAACACCGGGCTGCCGGCGTAGCTTTTCTGCAGTTTCTGTACGCTGACGAAGCTCATGTCAGGTCTTGTCCTTGTTCAgg > 2:239004/1‑136 (MQ=255) gACGGGCCGAGCAGGGTGACGAATTCGCCGCGTTCGATGTGGCAGTCGATGCGCTCTAACACCGGGCTGCCGGCGTAGCTTTTCTGCAGTTTCTGTACGCTGACGAAGCTCATGTCAGGTCTTGTCCTTGTTCAgg > 2:412482/1‑136 (MQ=255) gCCGAGCAGGGTGACGAATTCGCCGCGTTCGATGTGGCAGTCGATGCGCTCGAACACCGGGCTGCCGGCGTAGCTTTTCTGCAGTTTCTGTACGCTGACGAAGCTCATGTCAGGTCTTGTCCTTGTTCAGGCGGtt > 1:188963/1‑136 (MQ=255) gAGCAGGGTGACGAATTCGCCGCGTTCGATGTGGCAGTCGATGCGCTCGAACACCGGGCTGCCGGCGTAGCTTTTCTGCAGTTTCTGTACGCTGACGAAGCTCATGTCAGGTCTTGTCCTTGTTCAGGCGGTTGGc > 2:395889/1‑136 (MQ=255) aGCAGGGTGACGAATTCGCCGCGTTCGATGTGGCAGTCGATGCGCTCGAACACCGGGCTGCCGGCGTAGCTTTTCTGCAGTTTCTGTACGCTGACGAAGCTCATGTCAGGTCTTGTCCTTGTTCAGGCGGTTGGCg < 1:297230/136‑1 (MQ=255) gCAGGGTGACGAATTCGCCGCGTTCGATGTGGCAGTCGATGCGCTCGAACACCGGGCTGCCGGCGTAGCTTTTCTGCAGTTTCTGTACGCTGACGAAGCTCATGTCAGGTCTTGTCCTTGTTCAGGCGGTTGGCGa > 1:274264/1‑136 (MQ=255) gACGAATTCGCCGCGTTCGATGTGGCAGTCGATGCGCTCGAACACCGGGCTGCCGGCGTAGCTTTTCTGCAGTTTCTGTACGCTGACGAAGCTCATGTCAGGTCTTGTCCTTGTTCAGGCGGTTGGCGACCCAGGt > 2:448058/1‑136 (MQ=255) ttCGATGTGGCAGTCGATGCGCTCTAACACCGGGCTGCCGGCGTAGCTTTTCTGCAGTTTCTGTACGCTGACGAAGCTCATGTCAGGTCTTGTCCTTGTTCAGGCGGTTGGCGACCCAGGTCAGTACCAGCACGaa < 1:412482/136‑1 (MQ=255) ttCGATGTGGCAGTCGATGCGCTCTAACACCGGGCTGCCGGCGTAGCTTTTCTGCAGTTTCTGTACGCTGACGAAGCTCATGTCAGGTCTTGTCCTTGTTCAGGCGGTTGGCGACCCAGGTCAGTACCAGCACGaa < 1:239004/136‑1 (MQ=255) gATGCGCTCGAACACCGGGCTGCCGGCGTAGCTTTTCTGCAGTTTCTGTACGCTGACGAAGCTCATGTCAGGTCTTGTCCTTGTTCAGGCGGTTGGCGACCCAGGTCAGTACCAGCACGAAGGCGAAGTAGGAGAt < 2:480086/136‑1 (MQ=255) gcgcTCGAACACCGGGCTGCCGGCGTAGCTTTTCTGCAGTTTCTGTACGCAGACGAAGCTCATGTCAGGTCTTGTCCTTGTTCAGGCGGTTGGCGACCCAGGTCAGAACCAGCACGAAGCCGAAGTAGGAGATGAc > 1:157395/1‑136 (MQ=255) tCGAACACCGGGCTGCCGGCGTAGCTTTTCTGCAGTTTCTGTACGCTGACGAAGCTCATGTCAGGTCTTGTCCTTGTTCAGGCGGTTGGCGACCCAGGTCAGTACCAGCACGAAGGCGAAGTAGGAGATGACCAgc < 1:176841/136‑1 (MQ=255) | CCGTCGAGCAGTATCTGCCCGCTGTCCACCGAGGTCAGCCCGGCAATGCAGCGCAGCAGGGTGGACTTGCCGCAGCCGGACGGGCCGAGCAGGGTGACGAATTCGCCGCGTTCGATGTGGCAGTCGATGCGCTCGAACACCGGGCTGCCGGCGTAGCTTTTCTGCAGTTTCTGTACGCTGACGAAGCTCATGTCAGGTCTTGTCCTTGTTCAGGCGGTTGGCGACCCAGGTCAGTACCAGCACGAAGGCGAAGTAGGAGATGACCAGC > NC_002947/1928044‑1928311 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |