| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,329,204 | C→A | 16.6% | P300P (CCC→CCA) | PP_2043 → | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,329,204 | 0 | C | A | 16.6% | 73.4 / 2.9 | 24 | P300P (CCC→CCA) | PP_2043 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (11/9); new base A (2/2); total (13/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.83e-01 | |||||||||||
GGCGCCGAACATCGCCTATGACACCACTGGCCCTGGCACCGCCGGCCTGCGGACCGCCGACAGTCGCGACATGTTCAATGGCGCGCCTGACCGGTATGACTGGAAGCTGCTGGGCAAGCAGGCGCTGCACGTGCCCTACAACTGTTACCGCCTGGCATCGCCCGAGCTGCGCTATGTGGACCTGATCAAGCCAGGCCACATCGACCCGGCACCGACCCGCTACGAACTGCACCGGGTGTGGGTCGTGGAGGCGACG > NC_002947/2329069‑2329324 | ggCGCCGAACATCGCCTATGACACCACTGGCCCTGGCACCGCCGGCCTGCGGACCGCCGACAGTCGCGACATGTTCAATGGCGCGCCTGACCGGTATGACTGGAAGCTGCTGGGCAAGCAGGCGCTGCACGTGccc < 1:382298/136‑1 (MQ=255) cgcCGAACATCGCCTATGACACCACTGGCCCTGGCACCGCCGGCCTGCGGACCGCCGACAGTCGCGACATGTTCAATGGCGCGCCTGACCGGTATGACTGGAAGCTGCTGGGCAAGCAGGCGCTGCACGTGCCCTa < 2:123185/136‑1 (MQ=255) aCATCGCCTATGACACCACTGGCCCTGGCACCGCCGGCCTGCGGACCGCCGACAGTCGCGACATGTTCAATGGCGCGCCTGACCGGTATGACTGGAAGCTGCTGGGCAAGCAGGCGCTGCACGTGCCCTACAACTg < 1:296615/136‑1 (MQ=255) cGCCTATGACACCACTGGCCCTGGCACCGCCGGCCTGCGGACCGCCGACAGTCGCGACATGTTCAATGGCGCGCCTGACCGGTATGACTGGAAGCTGCTGGGCAAGCAGGCGCTGCACGTGCCCTACAACTGTTAc < 1:215952/136‑1 (MQ=255) caccacTGGCCCTGGCACCGCCGGCCTGCGGACCGCCGACAGTCGCGACATGTTCAATGGCGCGCCTGACCGGTATGACTGGAAGCTGCTGGGCAAGCAGGCGCTGCACGTGCCATACAACTGTTACCGCCTGGCa > 1:400994/1‑136 (MQ=255) caccacTGGCCCTGGCACCGCCGGCCTGCGGACCGCCGACAGTCGCGACATGTTCAATGGCGCGCCTGACCGGTATGACTGGAAGCTGCTGGGCAAGCAGGCGCTGCACGTGCCATACAACTGTTACCGCCTGGCa > 1:52442/1‑136 (MQ=255) cTGGCACCGCCGGCCTGCGGACCGCCGACAGTCGCGACATGTTCAATGGCGCGCCTGACCGGTATGACTGGAAGCTGCTGGGCAAGCAGGCGCTGCACGTGCCCTACAACTGTTACCGCCTGGCATCGCCCGAGCt < 1:481819/136‑1 (MQ=255) cTGGCACCGCCGGCCTGCGGACCGCCGACAGTCGCGACATGTTCAATGGCGCGCCTGACCGGTATGACTGGAAGCTGCTGGGCAAGCAGGCGCTGCACGTGCCATACAACTGTTACCGCCTGGCATCGCCCGAGCt < 2:400994/136‑1 (MQ=255) cTGGCACCGCCGGCCTGCGGACCGCCGACAGTCGCGACATGTTCAATGGCGCGCCTGACCGGTATGACTGGAAGCTGCTGGGCAAGCAGGCGCTGCACGTGCCATACAACTGTTACCGCCTGGCATCGCCCGAGCt < 2:52442/136‑1 (MQ=255) aCCGCCGGCCTGTGGACCGCCGACAGTCGCGACATGTTCAATGGCGCGCCTGACCGGTATGACTGGAAGCTGCTGGGCAAGCAGGCGCTGCACGTGCCCTACAACTGTTACCGCCTGGCATCGCCCGAGCTGCGCt > 1:53985/1‑136 (MQ=255) aCCGCCGGCCTGCGGACCGCCGACAGTCGCGACATGTTCAATGGCGCGCCTGACCGGTATGACTGGAAGCTGCTGGGCAAGCAGGCGCTGCACGTGCCCTACAACTGTTACCGCCTGGCATCGCCCGAGCTGCGCt > 1:367796/1‑136 (MQ=255) gccgGCCTGCGGACCGCCGACAGTCGCGACATGTTCAATGGCGCGCCTGACCGGTATGACTGGAAGCTGCTGGGCAAGCAGGCGCTGCCCGTGCCCTACAACTGTTACCGCCTGGCATCGCCCGAGCTGCGCTAtg > 2:263224/1‑136 (MQ=255) cgGCCTGCGGACCGCCGACAGTCGCGACATGTTCAATGGCGCGCCTGACCGGTATGACTGGAAGCTGCTGGGCAAGCAGGCGCTGCACGTGCCCTACAACTGTTACCGCCTGGCATCGCCCGAGCTGCGCTAtgtg > 2:129070/1‑136 (MQ=255) cgGCCTGCGGACCGCCGACAGTCGCGACATGTTCAATGGCGCGCCTGACCGGTATGACTGGAAGCTGCTGGGCAAGCAGGCGCTGCACGTGCCCTACAACTGTTACCGCCTGGCATCGCCCGAGCTGCGCTAtgtg > 2:8275/1‑136 (MQ=255) cgGCCTGCGGACCGCCGACAGTCGCGACATGTTCAATGGCGCGCCTGACCGGTATGACTGGAAGCTGCTGGACAAGCAGGCGCTGCACGTGCCCTACAACTGTTACCGCCTGGCATCGCCCGAGCTGCGCTAtgtg < 1:150913/136‑1 (MQ=255) ctCGCGACATGTTCAATGGCGCGCCTGACCGGTATGACTGGAAGCTGCTGGGCAAGCAGGCGCTGCACGTGCCCTACAACTGTTACCGCCTGGCATCGCCCGAGCTGCGCTATGTGGACCTGATCAAGCCAGGCca < 1:28695/135‑1 (MQ=255) aaTGGCGCGCCTGACCGGTATGACTGGAAGCTGCTGGGCAAGCAGGCGCTGCACGTGCCCTa > 1:226685/1‑62 (MQ=255) aaTGGCGCGCCTGACCGGTATGACTGGAAGCTGCTGGGCAAGCAGGCGCTGCACGTGCCCTa < 2:226685/62‑1 (MQ=255) gctgctGGGCAAGCAGGCGCTGCACGTGCCCTACAACTGTTACCGCCt > 2:408498/1‑48 (MQ=255) gctgctGGGCAAGCAGGCGCTGCACGTGCCCTACAACTGTTACCGCCt < 1:408498/48‑1 (MQ=255) ctgctgGGCAAGCCGGCGCTGCACGTGCCCTACAACTGTTACCGCCTGGCATCGCCCGAGCTGCGCTATGTGGACCTGATCAAGCCAGGCCACATCGACCCGGCACCGACCCGCTACGAACTCCACCGGGAGTggg > 1:223208/1‑136 (MQ=255) ggCGCTGCACGTGCCCTACAACTGTTACCGCCTGGCATCGccc < 2:98423/43‑1 (MQ=255) ggCGCTGCACGTGCCCTACAACTGTTACCGCCTGGCATCGccc > 1:98423/1‑43 (MQ=255) ggCGCTGCACGTGCCCTACAACTGTTACCGCCTGGCATCGCCCGAGCTGCGCTATGTGGACCTGATCAAGCCAGGCCACATCGACCCGGCACCGACCCGCTACGAACTGCACCGGGTGTGGGTCGTGGAGGCGACg > 1:395020/1‑136 (MQ=255) ggCGCTGCACGTGCCCTACAACTGTTACCGCCTGGCATCGCCCGAGCTGCGCTATGTGGACCTGATCAAGCCAGGCCACATCGACCCGGCACCGACCCGCTACGAACTGCACCGGGTGTGGGTCGTGGAGGCGACg > 1:159072/1‑136 (MQ=255) | GGCGCCGAACATCGCCTATGACACCACTGGCCCTGGCACCGCCGGCCTGCGGACCGCCGACAGTCGCGACATGTTCAATGGCGCGCCTGACCGGTATGACTGGAAGCTGCTGGGCAAGCAGGCGCTGCACGTGCCCTACAACTGTTACCGCCTGGCATCGCCCGAGCTGCGCTATGTGGACCTGATCAAGCCAGGCCACATCGACCCGGCACCGACCCGCTACGAACTGCACCGGGTGTGGGTCGTGGAGGCGACG > NC_002947/2329069‑2329324 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |