| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,788,534 | C→A | 16.6% | intergenic (‑120/‑6) | PP_2436 ← / → PP_2437 | LysR family transcriptional regulator/acyl‑CoA dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,788,534 | 0 | C | A | 16.6% | 70.3 / 2.8 | 24 | intergenic (‑120/‑6) | PP_2436/PP_2437 | LysR family transcriptional regulator/acyl‑CoA dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base C (9/11); new base A (2/2); total (11/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.83e-01 | |||||||||||
TTGCTAAGGTTCATGGGCGCCGCTCTTTGTTGGAATTATCGGTCGATCATATATCGGTTATGAATGTTTATACACGCGGAAAATAGACTAGGTGGATGGAGCAATGCTGCTCTAGGCTCTGGCCCACGTACTCCGAACTGTGAAGGTAGCCCAGATGGATTTCGCCTATTCGCCCAAGGTCCAGGCACTGCGCGAGCGTGTCACTGCGTTCATGGACGCTCATGTCTACCCCGCCGAAGCCGTGTTCGAGCGCCAGGT > NC_002947/2788401‑2788658 | ttGCTAAGGTTCATGGGCGCCGCTCTTTGTTGGAATTATCGGTCGATCATATATCGGTTATGAATGTTTATACACGCGGAAAATAGACTAGGTGGATGGAGCAATGCTGCTCTAGGCTCTGGCCCACGTACTCCgg > 1:422759/1‑135 (MQ=255)ttGCTAAGGTTCATGGGCGCCGCTCTTTGTTGGAATTATCGGTCGATCATATATCGGTTATGAATGTTTATACACGCGGAAAATAGACTAGGTGGATGGAGCAATGCTGCTCTAGGCTCTGGCCCACGTACTCCGa > 2:87474/1‑136 (MQ=255) gCTAAGGTTCATGGGCGCCGCTCTTTGTTGGAATTATCGGTCGATCATATATCGGTTATGAATGTTTATACACGCGGAAAATAGACTAGGTGGATGGAGCAATGCTGCTCTAGGCTCTGGCCCACGTACTCCGAAc < 1:402294/136‑1 (MQ=255) aGGTTCATGGGCGCCGCTCTTTGTTGGAATTATCGGTCGATCATATATCGGTTATGAATGTTTATACACGCGGAAAATAGACTAGGTGGATGGAGCAATGCTGCTCTAGGCTCTGGCCCACGTACTCCGAACtgtg > 1:422731/1‑136 (MQ=255) ggTTCATGGGCGCCGCTCTTTGTTGGAATTATCGGTCGATCATATATCGGTTATGAATGTTTATACACGCGGAAAATAGACTAGGTGGATGGAGCAATGCTGCTCTAGGCTCTGGCCCACGTACTCCGAACTGTGa < 2:40195/136‑1 (MQ=255) ggCGCCGCTCTTTGTTGGAATTATCGGTCGATCATATATCGGTTATGAATGTTTATACACGCGGAAAATAGACTAGGTGGATGGAGCAATGCTGCTCTAGGCTCTGGCCCACGTACTCCGAACTGTGAAGGTAGcc > 2:473046/1‑136 (MQ=255) gcgcCGCTCTTTGTTGGAATTATCGGTCGATCATATATCGGTTATGAATGTTTATACACGCGGAAAATAGACTAGGTGGATGGAGCAATGCTGCTCTAGGCTCTGGCCCACGTACTCCGAACTGTGAAGGTAGccc < 1:180639/136‑1 (MQ=255) ctctTTGTTGGAATTATCGGTCGATCATATATCGGTTATGAATGTTTATACACGCGGAAAATAGACTAGGTGGATGGAGCAATGCTGCTCTAGGCTCTGGCCCACGTACTCAGAACTGTGAAGGTAGCCCAGATgg > 2:124386/1‑136 (MQ=255) ctctTTGTTGGAATTATCGGTCGATCATATATCGGTTATGAATGTTTATACACGCGGAAAATAGACTAGGTGGATGGAGCAATGCTGCTCTAGGCTCTGGCCCACGTACTCAGAACTGTGAAGGTAGCCCAGATgg > 2:375399/1‑136 (MQ=255) tCGATCATATATCGGTTATGAATGTTTATACTCGCGGAAATTAGACTTGGTTGATGGAGCAATGCTGCTCTAGGCTCTGGCCCACGTACTCCGAACTGTGAAGGTAGCCCAGATGGATTTCGCCTATTCGCCCAAg < 1:229297/136‑1 (MQ=255) tCATATATCGGTTATGAATGTTTATACACGCGGAAAATAGACTAGGTGGATGGAGCAATGCTGCTCTAGGCTCTGGCCCACGTACTCCGAACTGTGAAGGTAGCCCAGATGGATTTCGCCTATTCGCCCAAGGTcc < 2:336709/136‑1 (MQ=255) tCATATATCGGTTATGAATGTTTATACACGCGGAAAATAGACTAGGTGGATGGAGCAATGCTGCTCTAGGCTCTGGCCCACGTACTCCGAACTGTGAAGGTAGCCCAGATGGATTTCGCCTATTCGCCCAAGGTcc > 2:36055/1‑136 (MQ=255) ggTTATGAATGTTTATACACGCGGAAAATAGACTAGGTGGATGGAGCAATGCTGCTCTAGGCTCTGGCCCACGTACTCCGAACTGTGAAGGTAGCCCAGATGGATTTCGCCTATTCGCCCAAGGTCCAGGCACTgc < 1:237797/136‑1 (MQ=255) aTGAATGTTTATACACGCGGAAAATAGACTAGGTGGATGGAGCAATGCTGCTCTAGGCTCTGGCCCACGTACTCCGAACTGTGAAGGTAGCCCAGATGGATTTCGCCTATTCGCCCAAGGTCCAGGCACTGCGCGa > 1:328783/1‑136 (MQ=255) tGTTTATACACGCGGAAAATAGACTAGGTGGATGGAGCAATGCTGCTCTAGGCTCTGGCCCACGTACTCCGAACTGTGAAGGTAGCCCAGATGGATTTCGCCTATTCGCCCAAGGTCCAGGCACTGCGCGAGCgtg < 1:66296/136‑1 (MQ=255) gTTTATACACGCGGAAAATAGACTAGGTGGATGGAGCAATGCTGCTCTAGGCTCTGGCCCACGTACTCCGAACTGTGAAGGTAGCCCAGATGGATTTCGCCTATTCGCCCAAGGTCCAGGCACTGCGCGAGCgtgt < 1:116966/136‑1 (MQ=255) acGCGGAAAATAGACTAGGTGGATGGAGCAATGCTGCTCTAGGCTCTGGCCCACGTACTCCGAACTGTGAAGGTAGCCCAGATGGATTTCGCCTATTCGCCCAAGGTCCAGGCACTGCGCGAGCGTGTCACTGCGt > 2:193173/1‑136 (MQ=255) aaTAGACTAGGTGGATGGAGCAATGCTGCTCTAGGCTCTGGCCCACGTACTCCGAACTGTGAAGGTAGCCCAGATGGATTTCGCCTATTCGCCCAAGGTCCAGGCACTGCGCGAGCGTGTCACTGCGTTCATGGAc < 1:36055/136‑1 (MQ=255) aaTAGACTAGGTGGATGGAGCAATGCTGCTCTAGGCTCTGGCCCACGTACTCCGAACTGTGAAGGTAGCCCAGATGGATTTCGCCTATTCGCCCAAGGTCCAGGCACTGCGCGAGCGTGTCACTGCGTTCATGGAc < 2:422731/136‑1 (MQ=255) aaTAGACTAGGTGGATGGAGCAATGCTGCTCTAGGCTCTGGCCCACGTACTCAGAACTGTGAAGGTAGCCCAGATGGATTTCGCCTATTCGCCCAAGGTCCAGGCACTGCGCGAGCGTGTCACTGCGTTCATGGAc < 1:124386/136‑1 (MQ=255) aaTAGACTAGGTGGATGGAGCAATGCTGCTCTAGGCTCTGGCCCACGTACTCAGAACTGTGAAGGTAGCCCAGATGGATTTCGCCTATTCGCCCAAGGTCCAGGCACTGCGCGAGCGTGTCACTGCGTTCATGGAc < 1:375399/136‑1 (MQ=255) aGCAATGCTGCTCTAGGCTCTGGCCCACGTACTCCGAACTGTGAAGGTAGCCCAGATGGATTTCGCCTATTCGCCCAAGGTCCAGGCACTGCGCGAGCGTGTCACTGCGTTCATGGACGCTCATGTCTACCccgcc > 2:20204/1‑136 (MQ=255) gCAATGCTGCTCTAGGCTCTGGCCCACGTACTCCGAACTGTGAAGGTAGCCCAGATGGATTTCGCCTATTCGCCCAAGGTCCAGGCACTGCGCGAGCGTGTCACTGCGTTCATGGACGCTCATGTCTACCccgccg < 1:87474/136‑1 (MQ=255) cccACGTACTCCGAACTGTGAAGGTAGCCCAGATGGATTTCGCCTATTCGCCCAAGGTCCAGGCACTGCGCGAGCGTGTCACTGCGTTCATGGACGCTCATGTCTACCCCGCCGAAGCCGTGTTCGAGCGCCAGGt > 2:404082/1‑136 (MQ=255) | TTGCTAAGGTTCATGGGCGCCGCTCTTTGTTGGAATTATCGGTCGATCATATATCGGTTATGAATGTTTATACACGCGGAAAATAGACTAGGTGGATGGAGCAATGCTGCTCTAGGCTCTGGCCCACGTACTCCGAACTGTGAAGGTAGCCCAGATGGATTTCGCCTATTCGCCCAAGGTCCAGGCACTGCGCGAGCGTGTCACTGCGTTCATGGACGCTCATGTCTACCCCGCCGAAGCCGTGTTCGAGCGCCAGGT > NC_002947/2788401‑2788658 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |