| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,126,217 | C→A | 14.8% | W73C (TGG→TGT) | PP_2737 ← | short‑chain dehydrogenase/reductase family oxidoreductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,126,217 | 0 | C | A | 14.8% | 77.4 / 2.8 | 27 | W73C (TGG→TGT) | PP_2737 | short‑chain dehydrogenase/reductase family oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base C (14/9); new base A (2/2); total (16/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.14e-01 | |||||||||||
CCGCCGCCAGGCAGTAGCTGACGCCCAGCAGGTTGGTGCGCATGACGCGCTCGACCAACGCCGGATCGAAATGCCCAGGCTCCAGGTATTCGCAGGTGCCGGCATTGAGAATGGCCATGTCCAGGCCTCCCCAGGCCTGCTCGATATGCGCAGCGATGCCGGCGACCTGCTCCGGGTTGTCAAGATCGCCAATGGCCAGCAATGCCTGCCCGGGAAACCGTTCTGCCAGCGGGGCAAGGCGGTCGGCGTTGCGCCCGCCC > NC_002947/3126087‑3126346 | ccgccgccAGGCAGTAGCTGACGCCCAGCAGGTTGGTGCGCATGACGCGCTCGACCAACGCCGGATCGAAATGCCCAGGCTCCAGGTATTCGCAGGTGCCGGCATTGAGAATGGCCATGTCCAGGCCTCCCCAGGc > 1:264482/1‑136 (MQ=255) gccgccAGGCAGTAGCTGACGCCCAGCAGGTTGGTGCGCATGACGCGCTCGACCAACGCCGGATCGAAATGCCCAGGCTCCAGGTATTCGCAGGTGCCGGCATTGAGAATGGCCATGTCCAGGCCTCCCCAGGccg > 1:8077/1‑135 (MQ=255) cgccAGGCAGTAGCTGACGCCCAGCAGGTTGGTGCGCATGACGCGCTCGACCAACGCCGGATCGAAATGCCCAGGCTCCAGGTATTCGCAGGTGCCGGCATTGAGAATGGCCATGTCCAGGCCTCCCCAGGCCTGc < 1:203371/136‑1 (MQ=255) ccAGGCAGTAGCTGACGCCCAGCAGGTTGGTGCGCATGACGCGCTCGACCAACGCCGGATCGAAATGCCCAGGCACCAGGTATTCGCAGGTGCCGGCATTGAGAATGGCCATGTCCAGGCCTCCCCAGGCCTGCTc > 1:277629/1‑136 (MQ=255) cTGACGCCCAGCAGGTTGGTGCGCATGACGCGCTCGACCAACGCCGGATCGAAATGCCCAGGCTCCAGGTATTCGCAGGTGCCGGCATTGAGAATGGCCATGTCCAGGCCTCCCCAGGCCTGCTCGATATGCGCAg > 1:281290/1‑136 (MQ=255) gTGCGCATGACGCGCTCGACCAACGCCGGATCGAAATGCCCAGGCTCCAGGTATTCGCAGGTGCCGGCATTGAGAATGGCCATGTCCAGGCCTCCCCAGGCCTGCTCGATATGCGCAGCGATGCCGGCGACCTGCt > 2:497376/1‑136 (MQ=255) gcATGACGCGCTCGACCAACGCCGGATCGAAATGCCCAGGCTCCAGGTATTCGCAGGTGCCGGCATTGAGAATGGCCATGTCCAGGCCTCCCCAGGCCTGCTCGATATGCGCAGCGATGCCGGCGACCTGCTCCgg > 2:48123/1‑136 (MQ=255) gcATGACGCGCTCGACCAACGCCGGATCGAAATGCCCAGGCTCCAGGTATTCGCAGGTGCCGGCATTGAGAATGGCCATGTCCAGGCCTCCCCAGGCCTGCTCGATATGCGCAGCGATGCCGGCGACCTGCTCCgg > 2:240768/1‑136 (MQ=255) gcgcTCGACCAACGCCGGATCGAAATGCCCAGGCTCCAGGTATTCGCAGGTGCCGGCATTGAGAATGGCCATGTCCAGGCCTCCCCAGGCCTGCTCGATATGCGCAGCGATGCCGGCGACCTGCTCCGGGTTGTCa < 2:182542/136‑1 (MQ=255) cTCGACCAACGCCGGATCGAAATGCCCAGGCTCCAGGTATTCGCAGGTGCCGGCATTGAGAATGGCCATGTCCAGGCCTCCACAGGCCTGCTCGATATGCGCAGCGATGCCGGCGACCTGCTCCGGGTTGTCAAGa > 2:417365/1‑136 (MQ=255) cTCGACCAACGCCGGATCGAAATGCCCAGGCTCCAGGTATTCGCAGGTGCCGGCATTGAGAATGGCCATGTCCAGGCCTCCACAGGCCTGCTCGATATGCGCAGCGATGCCGGCGACCTGCTCCGGGTTGTCAAGa > 2:297946/1‑136 (MQ=255) cAACGCCGGATCGAAATGCCCAGGCTCCAGGTATTCGCAGGTGCCGGCATTGAGAATGGCCATGTCCAGGCCTCCCCAGGCCTGCTCGATATGCGCAGCGATGCCGGCGACCTGCTCCGGGTTGTCAAGATCGCCa < 2:342759/136‑1 (MQ=255) cGGATCGAAATGCCCAGGCTCCAGGTATTCGCAGGTGCCGGCATTGAGAATGGCCATGTCCAGGCCTCCCCAGCCCTGCTCGATATGAGCAGCGATGCCGGCGACCTGCTCCGGGTTGTCAAGATCGCCAATGGcc > 2:169328/1‑136 (MQ=255) tGCCCAGGCTCCAGGTATTCGCAGGTGCCGGCATTGAGAATGGCCATGTCCAGGCCTCCCCAGGCCTGCTCGATATGCGCAGCGATGCCGGCGACCTGCTCCGGGTTGTCAAGATCGCCAATGGCCAGCAAtgcct < 1:436929/136‑1 (MQ=255) ccAGGCTCCAGGTATTCGCAGGTGCCGGCATTGAGAATGGCCATGTCCAGGCCTCCCCAGGCCTGCTCGATATGCGCAGCGATGCCGGCGACCTGCTCCGGGTTGTCAAGATCGCCAATGGCCAGCAAtgcctgcc > 2:122635/1‑136 (MQ=255) gTATTCGCAGGTGCCGGCATTGAGAATGGCCATGTCCAGGCCTCCCCAGGCCTGCTCGATATGCGCAGCGATGCCGGCGACCTGCTCCGGGTTGTCAAGATCGCCAATGGCCAGCAATGCCTGCCCGGGAAACCGt > 2:249429/1‑136 (MQ=255) cGCAGGTGCCGGCATTGAGAATGGCCATGTCCAGGCCTCCCCAGGCCTGCTCGATATGCGCAGCGATGCCGGCGACCTGCTCCGGGTTGTCAAGATCGCCAATGGCCAGCAATGCCTGCCCGGGAAACCGTTCTGc < 2:272684/136‑1 (MQ=255) cGCAGGTGCCGGCATTGAGAATGGCCATGTCCAGGCCTCCCCAGGCCTGCTCGATATGCGCAGCGATGCCGGCGACCTGCTCCGGGTTGTCAAGATCGCCAATGGCCAGCAATGCCTGCCCGGGAAACCGTTCTGc < 2:277629/136‑1 (MQ=255) aGGTGCCGGCATTGAGAATGGCCATGTCCAGGCCTCCCCAGGCCTGCTCGATATGCGCAGCGATGCCGGCGACCTGCTCCGGGTTGTCAAGATCGCCACTGGCCAGCAATGCCTGCCCGGGAAACCGTTCTGCCAg > 2:491054/1‑136 (MQ=255) aGGTGCCGGCATTGAGAATGGCCATGTCCAGGCCTCCCCAGGCCTGCTCGATATGCGCAGCGATGCCGGCGACCTGCTCCGGGTTGTCAAGATCGCCACTGGCCAGCAATGCCTGCCCGCGAAACCGTTCTGCCAg > 2:92697/1‑136 (MQ=255) ggCATTGAGAATGGCCATGTCCAGGCCTCCCCAGGCCTGCTCGATATGCGCAGCGATGCCGGCGACCTGCTCCGGGTTGTCAAGATCGCCAATGGCCAGCAATGCCTGCCCGGGAACCCGTTCTGCCAGCGGGGCa > 1:149907/1‑136 (MQ=255) aaTGGCCATGTCCAGGCCTCCCCAGGCCTGCTCGATATGCGCAGCGATGCCGGCGACCTGCTCCGGGTTGTCAAGATCGCCAATGGCCAGCAATGCCTGCCCGGGAAACCGTTCTGCCAGCGGGGCAAGGCGGTCg > 1:476659/1‑136 (MQ=255) aaTGGCCATGTCCAGGCCTCCCCACGCCTGCTCGATATGCGCAGCGATGCCGGCGACCTGCTCCGGGTTGTCAAGATCGCCAATGGCCAGCAATGCCTGCCCGGGAAACCGTTCTGCCAGCGGGGCAAGGCGGTCg < 2:315290/136‑1 (MQ=255) cATGTCCAGGCCTCCACAGGCCTGCTCGATATGCGCAGCGATGCCGGCGACCTGCTCCGGGTTGTCAAGATCGCCAATGGCCAGCAATGCCTGCCCGGGAAACCGTTCTGCCAGCGGGGCAAGGCGGTCGGCGTTg < 1:417365/136‑1 (MQ=255) cATGTCCAGGCCTCCACAGGCCTGCTCGATATGCGCAGCGATGCCGGCGACCTGCTCCGGGTTGTCAAGATCGCCAATGGCCAGCAATGCCTGCCCGGGAAACCGTTCTGCCAGCGGGGCAAGGCGGTCGGCGTTg < 1:297946/136‑1 (MQ=255) aTGTCCAGGCCTCCCCAGGCCTGCTCGATATGCGCAGCGATGCCGGCGACCTGCTCCGGGTTGTCAAGATCGCCAATGGCCAGCAATGCCTGCCCGGGAAACCGTTCTGCCAGCGGGGCAAGGCGGTCGGCGTTgc < 1:41970/136‑1 (MQ=255) gCCTCCCCAGGCCTGCTCGATATGCGCAGCGATGCCGGCGACCTGCTCCGGGTTGTCAAGATCGCCAATGGCCAGCAATGCCTGCCCGGGAAACCGTTCTGCCAGCGGGGCAAGGCGGTCGGCGTTGCgcccgccc < 2:312997/136‑1 (MQ=255) | CCGCCGCCAGGCAGTAGCTGACGCCCAGCAGGTTGGTGCGCATGACGCGCTCGACCAACGCCGGATCGAAATGCCCAGGCTCCAGGTATTCGCAGGTGCCGGCATTGAGAATGGCCATGTCCAGGCCTCCCCAGGCCTGCTCGATATGCGCAGCGATGCCGGCGACCTGCTCCGGGTTGTCAAGATCGCCAATGGCCAGCAATGCCTGCCCGGGAAACCGTTCTGCCAGCGGGGCAAGGCGGTCGGCGTTGCGCCCGCCC > NC_002947/3126087‑3126346 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |