| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,018,201 | G→A | 100% | intergenic (+144/‑36) | mvaB → / → PP_mr44 | hydroxymethylglutaryl‑CoA lyase/CrcZ ncRNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,018,201 | 0 | G | A | 100.0% | 52.3 / NA | 18 | intergenic (+144/‑36) | mvaB/PP_mr44 | hydroxymethylglutaryl‑CoA lyase/CrcZ ncRNA |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (12/6); total (12/6) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
CATTGGTGTGGGTGAAGTGTTACCTCCCGCACATTTCACAGCAAAAAATCGGGTAACAGGGAAACAAATCGGCAGAATTTCAGGCTGGGTGGTGTCGACCAAAAATCTTAACTCATTAATTTTAAAGGGTTTTCAAAAGTTGGCACGCACCCTGCTATATCTCTGGTACAACAACAAAAAAAACGCGATACCCAATAAAAACAACAGGTAACGGCTCTGACATAACAAGAACAACACGGCAGAGGCGTAGCAAGCAGATTTTT > NC_002947/4018073‑4018335 | caTTGGTGTGGGTGAAGTGTTACCTCCCGCACATTTCACAGCAAAAAATCGGGTAACAGGGAAACAAATCGGCAGAATTTCAGGCTGGGTGGTGTCGACCAAAAATCTTAACTCATTAATTTTAAAGGATTTTCaa < 2:46087/136‑1 (MQ=255) gtgGGTGAAGTGTTACCTCCCGCACATTTCACAGCAAAAAATCGGGTAACAGGGAAACAAATCGGCAGAATTTCAGGCTGGGTGGTGTCGACCAAAAATCTTAACTCATTAATTTTAAAGGATTTTCAAAAGTTgg < 2:261685/136‑1 (MQ=255) ggTGAAGTGTTACCTCCCGCACATTTCACAGCAAAAAATCGGGTAACAGGGAAACAAATCGGCAGAATTTCAGGCTGGGTGGTGTCGACCAAAAATCTTAACTCATTAATTTTAAAGGATTTTCAAAAGTTGgcac < 1:102925/136‑1 (MQ=255) gTGAAGTGTTACCTCCCGCACATTTCACAGCAAAAAATCGGGTAACAGGGAAACAAATCGGCAGAATTTCAGGCTGGGTGGTGTCGACCAAAAATCTTAACTCATTAATTTTAAAGGATTTTCAAAAGTTGgcacg > 2:127864/1‑136 (MQ=255) gtTACCTCCCGCACATTTCACAGCAAAAAATCGGGTAACAGGGAAACAAATCGGCAGAATTTCAGGCTGGGTGGTGTCGACCAAAAATCTTAACTCATTAATTTTAAAGGATTTTCAAAAGTTGGCACGCACCCTg > 2:263808/1‑136 (MQ=255) gtTACCTCCCGCACATTTCACAGCAAAAAATCGGGTAACAGGGAAACAAATCGGCAGAATTTCAGGCTGGGTGGTGTCGACCAAAAATCTTAACTCATTAATTTTAAAGGATTTTCAAAAGTTGGCACGCACCCTg > 1:376186/1‑136 (MQ=255) tCCCGCACATTTCACAGCAAAAAATCGGGTAACAGGGAAACAAATCGGCAGAATTTCAGGCTGGGTGGTGTCGACCAAAAATCTTAACTCATTAATTTTAAAGGATTTTCAAAAGTTGGCACGCACCCTGCTatat > 1:380159/1‑136 (MQ=255) acaTTTCACAGCAAAAAATCGGGTAACAGGGAAACAAATCGGCAGAATTTCAGGCTGGGTGGTTTCGACCAAAAATCTTAACTCATTAATTTTAAAGGATTTTCAAAAGTTGGCACGCACCCTGCTATATCTCTgg > 1:63536/1‑136 (MQ=255) acaTTTCACAGCAAAAAATCGGGTAACAGGGAAACAAATCGGCAGAATTTCAGGCTGGGTGGTGTCGACCAAAAATCTTAACTCATTAATTTTAAAGGATTTTCAAAAGTTGGCACGCACCCTGCTATATCTCTgg > 1:108345/1‑136 (MQ=255) aaaTCGGGTAACAGGGAAACAAATCGGCAGAATTTCAGGCTGGGTGGTGTCGACCAAAAATCTTAACTCATTAATTTTAAAGGATTTTCAAAAGTTGGCACGCACCCTGCTATATCTCTGGTACAACAACaaaaaa > 2:499658/1‑136 (MQ=255) aaCAGGGAAACAAATCGGCAGAATTTCAGGCTGGGTGGTGTCGACCAAAAATCTTAACTCATTAATTTTAAAGGATTTTCAAAAGTTGGCACGCACCCTGCTATATCTCTGGTACAACAACAAAAAAAACGCGATa > 1:406574/1‑136 (MQ=255) aaaTCGGCAGAATTTCAGGCTGGGTGGTGTCGACCAAAAATCTTAACTCATTAATTTTAAAGGATTTTCAAAAGTTGGCACGCACCCTGCTATATCTCTGGTACAACAACAAAAAAAACGCGATACCCAATaaaaa > 2:364745/1‑136 (MQ=255) aaaTCGGCAGAATTTCAGGCTGGGTGGTGTCGACCAAAAATCTTAACTCATTAATTTTAAAGGATTTTCAAAAGTTGGCACGCACCCTGCTATATCTCTGGTACAACAACAAAAAAAACGCGATACCCAATaaaaa < 1:127864/136‑1 (MQ=255) cAGAATTTCAGGCTGGGTGGTGTCGACCAAAAATCTTAACTCATTAATTTTAAAGGATTTTCAAAAGTTGGCACGCACCCTGCTATATCTCTGGTACAACAACAAAAAAAACGCGATACCCAATAAAAACAACAgg < 2:376186/136‑1 (MQ=255) gtggtgTCGACCAAAAATCTTAACTCATTAATTTTAAAGGATTTTCAAAAGTTGGCACGCACCCTGCTATATCTCTGGTACAACAACAAAAAAAACGCGATACCCAATAAAAACAACAGGTAACGGCTCTGACATa > 2:271865/1‑136 (MQ=255) ggagtCGACCAAAAATCTTAACTCATTAATTTTAAAGGATTTTCAAAAGTTGGCACGCACCCTGCTATATCTCTGGTACAACAACAAAAAAAACGCGATACCCAATAAAAACAACAGGTAACGGCTCTGACATAAc > 2:317977/4‑136 (MQ=255) aaaTCTTAACTCATTAATTTTAAAGGATTTTCAAAAGTTGGCACGCACCCTGCTATATCTCTGGTACAACAACAAAAAAAACGCGATACCCAATAAAAACAACAGGTAACGGCTCTGACATAACAAGAACAACACg < 2:48681/136‑1 (MQ=255) cTCATTAATTTTAAAGGATTTTCAAAAGTTGGCACGCACCCTGCTATATCTCTGGTACAACAACAAAAAAAACGCGATACCCAATAAAAACAACAGGTAACGGCTCTGACATAACAAGAACAACACGGCAGAGGCg > 1:29749/1‑136 (MQ=255) ggTTTTCAAAAGTTGGCACGCACCCTGCTATATCTCTGGTACAACAACAAAAAAAACGCGATACCCAATAAAAACAACAGGTAACGGCTCTGACATAACAAGAACAACACGGCAGAGGCGTAGCAAGCAGAttttt > 1:209815/1‑136 (MQ=255) | CATTGGTGTGGGTGAAGTGTTACCTCCCGCACATTTCACAGCAAAAAATCGGGTAACAGGGAAACAAATCGGCAGAATTTCAGGCTGGGTGGTGTCGACCAAAAATCTTAACTCATTAATTTTAAAGGGTTTTCAAAAGTTGGCACGCACCCTGCTATATCTCTGGTACAACAACAAAAAAAACGCGATACCCAATAAAAACAACAGGTAACGGCTCTGACATAACAAGAACAACACGGCAGAGGCGTAGCAAGCAGATTTTT > NC_002947/4018073‑4018335 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |