| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,429,042 | G→T | 15.4% | P94P (CCG→CCT) | PP_3915 → | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,429,042 | 0 | G | T | 15.4% | 74.1 / 2.7 | 26 | P94P (CCG→CCT) | PP_3915 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (10/12); new base T (2/2); total (12/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.55e-01 | |||||||||||
GATCGGCATTGAGATCGTCGGCCACTACATGGGCAAACCATGTGCGCGGGTGCTCGGCGAGAACTACAACGAGAACCTGCGCGCCGCCATCGACCAGGCGCTCACCGCTGAGGCATATCCGCCAGAGCGCCCGGAGTACGACCTGTATGGCAATCCGGAGCGGAGGCGCGCATGACCGACCTGATCGAAGTGAAGACGGCAGACCTGGTGGGCGAGGCGCTTGGGTGGGCCGTGGGCACGGCGGAAGGCCTGGACCTGTTCATGGCGC > NC_002947/4428910‑4429177 | gATCGGCATTGAGATCGTCGGCCACTACATGGGCAAACCATGTGCGCGGGTGCTCGGCGAGAACTACAACGAGAACCTGCGCGCCGCCATCGACCAGGCGCTCACCGCTGAGGCATATCCGCCAGAGCGCCCGGAg > 1:447399/1‑136 (MQ=255) aTCGGCATTGTGATCGTCGGCCACTACATGGGCAAACCATGTGCGCGGGTGCTCGGCGAGAACTACAACGAGAACCTGCGCGCCGCCATCGACCAGGCGCTCACCGCTGAGGCATATCCGCCAGAGCGCCCGGAGt < 1:7520/136‑1 (MQ=255) aTCGGCATTGAGATCGTCGGCCACTACATGGGCAAACCATGTGCGCGGGTGCTCGGCGAGAACTACAACGAGAACCTGCGCGCCGCCATCGACCAGGCGCTCACCGCTGAGGCATATCCGCCAGAGCGCCCGGAGt < 1:6389/136‑1 (MQ=255) ggCCACTACATGGGCAAACCATGTGCGCGGGTGCTCGGCGAGAACTACAACGAGAACCTGCGCGCCGCCATCGACCAGGCGCTCACCGCTGAGGCATATCCGCCAGAGCGCCCGGAGTACGACCTGTATGGCAATc > 1:193701/1‑136 (MQ=255) ggCCACTACATGGGCAAACCATGTGCGCGGGTGCTCGGCGAGAACTACAACGAGAACCTGCGCGCCGCCATCGACCAGGCGCTCACCGCTGAGGCATATCCGCCAGAGCGCCCGGAGTACGACCTGTATGGCAATc > 2:121935/1‑136 (MQ=255) gggCAAACCATGTGCGCGGGTGCTCGGCGAGAACTACAACGAGAACCTGCGCGCCGCCATCGACCAGGCGCTCACCGCTGAGGCATATCCGCCAGAGCGCCCGGAGTACGACCTGTATGGCAATCCGGAGCGGAgg < 2:447399/136‑1 (MQ=255) ggCAAACCATGTGCGCGGGTGCTCGGCGAGAACTACAACGAGAACCTGCGCGCCGCCATCGACCAGGCGCTCACCGCTGAGGCATATCCGCCAGAGCGCCCGGAGTACGACCTGTATGGCAATCCGGAGCGGAGgc < 1:144481/136‑1 (MQ=255) cATGTGCGCGGGTGCTCGGCGAGAACTACAACGAGAACCTGCGCGCCGCCATCGACCAGGCGCTCACCGCTGAGGCATATCCGCCAGAGCGCCCTGAGTACGACCTGTATGGCAATCCGGAGCGGAGGCGCGCATg > 2:296346/1‑136 (MQ=255) cATGTGCGCGGGTGCTCGGCGAGAACTACAACGAGAACCTGCGCGCCGCCATCGACCAGGCGCTCACCGCTGAGGCATATCCGCCAGAGCGCCCTGAGTACGACCTGTATGGCAATCCGGAGCGGAGGCGCGCATg > 2:293524/1‑136 (MQ=255) cATGTGCGCGGGTGCTAGGCGAGAACTACAACGAGAACCTGCGCGCCGCCATCGACCAGGCGCTCACCGCTGAGGCATATCCGCCAGAGCGCCCGGAGTACGACCTGTATGGCAATCCGGAGCGGAGGCGCGCATg > 1:100663/1‑136 (MQ=255) gcgGGTGCTCGGCGAGAACTACAACGAGAACCTGCGCGCCGCCATCGACCAGGCGCTCACCGCTGAGGCATATCCGCCAGAGCGCCCGGAGTACGACCTGTATGGCAATCCGGAGCGGAGGCGCGCATgaccgacc > 2:185854/1‑136 (MQ=255) gggTGCTCGGCGAGAACTACAACGAGAACCTGCGCGCCGCCATCGACCAGGCGCTCACCGCTGAGGCATATCCGCCAGAGCGCCCGGAGTACGACCTGTATGGCAATCCGGAGCGGAGGCGCGCATGACCGACCTg > 1:439198/1‑136 (MQ=255) gCTCGGCGAGAACTACAACGAGAACCTGCGCGCCGCCATCGACCAGGCGCTCACCGCTGAGGCATATCCGCCAGAGCGCCCGGAGTACGACCTGTATGGCAATCCGGAGCGGAGGCGCGCATGACCGACCTGATCg > 1:398138/1‑136 (MQ=255) aCTACACCGAGAACCGGCGCGCCGCCATCGACCAGGCGCTCACCGCTGAGGCATATCCGCCAGAGCGCCCGGAGTACGACCTGTATGGCAATCCGGAGCGGAGGCGCGCATGACGGACCTGATCGAAGTGAAGACg < 1:494624/136‑1 (MQ=255) aCCTGCGCGCCGCCATCGACCAGGCGCTCACCGCTGAGGCATATCCGCCAGAGCGCCCGGAGTACGACCTGTATGGCAATCCGGAGCGGAGGCGCGCATGACCGACCTGATCGAAGTGAAGACGGCAGACCtggtg > 1:487497/1‑136 (MQ=255) ccTGCGCGCCGCCATCGACCAGGCGCTCACCGCTGAGGCATATCCGCCAGAGCGCCCTGAGTACGACCTGTATGGCAATCCGGAGCGGAGGCGCGCATGACCGACCTGATCGAAGTGAAGACGGCAGACCtggtgg < 1:296346/136‑1 (MQ=255) ccTGCGCGCCGCCATCGACCAGGCGCTCACCGCTGAGGCATATCCGCCAGAGCGCCCTGAGTACGACCTGTATGGCAATCCGGAGCGGAGGCGCGCATGACCGACCTGATCGAAGTGAAGACGGCAGACCtggtgg < 1:293524/136‑1 (MQ=255) tGCGCGCCGCCATCGACCAGGCGCTCACCGCTGAGGCATATCCGCCAGAGCGCCCGGAGTACGACCTGTATGGCAATCCGGAGCGGAGGCGCGCATGACCGACCTGATCGAAGTGAAGACGGCAGCCCTGGTGGGc > 1:50540/1‑136 (MQ=255) gcgcCGCCATCGACCTGGCGCTCACCGCTGAGGCATATCCGCCAGAGCGCCCGGAGTACGACCTGTATGGCAATCCGGAGCGGAGGCGCGCATGACCGACCTGATCGAAGTGAAGACGGCAGACCTGGTGGGCGAg < 2:193701/136‑1 (MQ=255) gcgcCGCCATCGACCAGGCGCTCACCGCTGAGGCATATCCGCCAGAGCGCCCGGAGTACGACCTGTATGGCAATCCGGAGCGGAGGCGCGCATGACCGACCTGATCGAAGTGAAGACGGCAGACCTGGTGGGCGAg < 1:384986/136‑1 (MQ=255) gccgccATCGACCAGGCGCTCACCGCTGAGGCATATCCGCCAGAGCGCCCGGAGTACGACCTGTATGGCAATCCGGAGCGGAGGCGCGCATGACCGACCTGATCGAAGTGAAGACGGCAGACCTGGTGGGCGAGgc < 2:449672/136‑1 (MQ=255) cGCTGAGGCATATCCGCCAGAGCGCCCGGAGTACGACCTGTATGGCAATCCGGAGCGGAGGCGCGCATGACCGACCTGATCGAAGTGAAGACGGCAGACCTGGTGGGCGAGGCGCTTGGGTGGGCCGTGGGCAcgg < 2:79980/136‑1 (MQ=255) cGCTGAGGCATATCCGCCAGAGCGCACGGAGTACGACCTGTATGGCAATCCGGAGCGGAGGCGCGCATGACCGACCTGATCGAAGTGAAGACGGCAGACCTGGTGGGCGAGGCGCTTGGGTGGGCCGTGGGCAcgg < 2:464136/136‑1 (MQ=255) gCTGAGGCATATCCGCCAGAGCGCCCGGAGTACGACCTGTATGGCAATCCGGAGCGGAGGCGCGCATGACCGACCTGATCGAAGTGAAGACGGCAGACCTGGTGGGCGAGGCGCTTGGGTGGGCCGTGGGCAcggc < 2:252786/136‑1 (MQ=255) aGGCATATCCGCCAGAGCGCCCGGAGTACGACCTGTATGGCAATCCGGAGCGGAGGCGCGCATGACCGCCCTGATCGAAGTGAAGACGGCAGACCTGGTGGGCGAGGCGCTTGGGTGGGCCGTGGGCACGGCGGaa > 1:462381/1‑136 (MQ=255) ggCATATCCGCCAGAGCGCCCGGAGTACGACCTGTATGGCAATCCGGAGCGGAGGCGCGCATGACCGACCTGATCGAAGTGAAGACGGCAGACCTGGTGGGCGAGGCGCTTGGGTGGGCCGTGGGCACGGCGGAAg < 2:6559/136‑1 (MQ=255) ggAGTACGACCTGTATGGCAATCCGGAGCGGAGGCGCGCATGACCGACCTGATCGAAGTGAAGACGGCAGACCTGGTGGGCGAGGCGCTTGGGTGGGCCGTGGGCACGGCGGAAGGCCTGGACCTGTTCATGgcgc < 2:398138/136‑1 (MQ=255) | GATCGGCATTGAGATCGTCGGCCACTACATGGGCAAACCATGTGCGCGGGTGCTCGGCGAGAACTACAACGAGAACCTGCGCGCCGCCATCGACCAGGCGCTCACCGCTGAGGCATATCCGCCAGAGCGCCCGGAGTACGACCTGTATGGCAATCCGGAGCGGAGGCGCGCATGACCGACCTGATCGAAGTGAAGACGGCAGACCTGGTGGGCGAGGCGCTTGGGTGGGCCGTGGGCACGGCGGAAGGCCTGGACCTGTTCATGGCGC > NC_002947/4428910‑4429177 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |